LOC113537592 (abce1,LOC108262828,LOC107653221,LOC108441533)


Basic Information

Item Value
gene id LOC113537592
gene name abce1,LOC108262828,LOC107653221,LOC108441533
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5445363 ~ 5457180 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932161.2
GTGGGAAAAAAATGCCTGGTTTTAATTTACCAAAATTGCAACGTAGCTGTCTGTATGTATTAAGCAAGACGTGGTGGAGCGCTAGTGTGTACATTGTGCTAAGCTCTGGGAAGGGCTCAGTTTGGCCCTTTCCTAACAAGACCCTGAAAGAATGTCTGAAAAACCGATCCGAATTGCCATAGTGAACCATGATAAATGCAAGCCAAAGAAATGCAAGCAGGAGTGCAAGAAGAGCTGCCCGGTGGTCCGAATGGGCAAACTGTGTATAGAGGTCACCACACAAAGCAAAATCGTATGGATATCTGAATCGCTCTGTATAGGATGCGCTATCTGCATCAAGAAATGTCCATTTGGTGCTTTGGCTATCGTCAACCTGCCGAGTAACCTGGAGAAAGAGACCACACACCGATACTGTGCCAACTCTTTTAAACTACACAGGTTACCAATCCCCAGACCAGGAGAGGTTTTAGGGCTGGTCGGTACTAACGGCATTGGAAAATCAACAGCACTGAAGATCCTCGCTGGAAAACAGAAGCCCAACCTGGGGAAATTTGATACTCCCCCTGACTGGCAGGAAATCCTGGCTTACTTCCGAGGATCTGAACTGCAGAACTACTTCACAAAGATCCTGGAAGACGATCTGAAAGCCATTGTGAAGCCTCAGTACGTCGACCAGATCCCCAAAACTGTCAAGGGAAGCATAGGCTCTATTCTGAGCAGGAAGGATGACACTAAGACAGAGACTGTAGTCTGTGAGCAACtcgATCTGACTCATCTCAGGGACAGGAATGTTGAGGATCTGTCAGGAGGAGAGCTGCAGCGTTTCGCCTGTGCAGTGGTGTGCATCCAGAGAGCAGACATTTTCATGTTTGATGAGCCCTCCAGTTACTTGGATGTGAAGCAGCGTTTGAAAGCTGCCATCACCATTCGCTCTCTTATCACACCAGACAGATACGTAATTGTTGTAGAGCATGATCTGAGTGTTCTGGACTACCTGTCGGACTTCATCTGCTGTCTGTATGGAGTACCCAGTGCCTACGGTGTCGTTACCATGCCCTTCAGTGTACGAGAAGGCATCAACATTTTCCTGGACGGATACGTGCCGACTGAGAACCTCCGGTTCCGTGACACTTCACTGGTTTTCAAAGTAGCTGAGACGGCCACTGAAGAGGAGGTGAAGAAGATGTGTCGATACCAGTACCCCAATATGAAGAAGGCCATGGGTGACTTCGAGCTGAGGATCATTGAGGGCGAGTTCACTGACTCTGAGATCATGGTCATGCTTGGAGAAAACGGAACTGGCAAAACTACATTCATTAGGCTGCTCGCTGGCCGATTAAAACCAGATGATGGAGGAGAAGTCCCGATCCTCAACGTCAGCTACAAACCTCAAAAGATCAGCCCCAAATTCAAAGGTAGCGTGCGTGCCCTGCTGCACGAGAAGATCAGGGATGCGTACACACACCCGCAGTTCGTCACAGACGTCATGAAGCCTATGCAGATTGACAGCATCATCGATCAGGATGTTCAGAACCTGTCCGGAGGAGAGCTGCAGAGAGTAGCGCTCGCTCTGTGTCTGGGTAAACCTGCAGACGTCTACCTGATAGACGAGCCCTCGGCATACCTGGACTCAGAACAGCGGCTGATGGCTGCCAGAGTTATCAAACGATTCATCCTGCATGCAAAGAAGACAGCTTTTGTAGTCGAGCATGACTTCATCATGGCCACGTACCTGGCTGACCGTGTTATTGTGTTCGATGGAGTTCCGTCACAGAGAACGACTGCCAACACGCCACAGATGCTGCTTGCTGGCATGAACAAGTTCCTTTCACTGCTGGAGATTACGTTCAGGAGAGACCCCAACAACTTCAGACCAAGAATCAACAAGCTCAATTCCATTAAGGATGTTGAACAGAAGAGAAGTGGCAACTATTTCTTCCTCGATGATTAGCTCTACACGTCATAAACTTCGATAAGAGAATGAAGGAGGAGAAGTGATACTCTGCTGCTTCTGAGGTCTTCTGTAATGCTGCTTTAAGTGAGCTGCTGTTAGGTGGATTTGATTTTCCATCCACAAGGAGTTAGTATCTATCTAGTATTTAAGAGGCAACactataaatataatcatttcCTCAGTGTGGGTCTTCTTAATCCAATTTCAGTGTTTGACCACTAGAAGGCAGCAGACTACCAGTACTGCTGTCAGTATGGCTCTAAATTCTCCTGTCTTTTAATATGTGGATTAAAAGTGATATGGATGAGA

Function

symbol description
abce1 Predicted to enable ATP binding activity; iron ion binding activity; and ribosomal small subunit binding activity. Predicted to be involved in ribosomal subunit export from nucleus; translational initiation; and translational termination. Is expressed in several structures, including alar plate midbrain region; head; intermediate cell mass of mesoderm; optic tectum; and ventral mesoderm. Human ortholog(s) of this gene implicated in human immunodeficiency virus infectious disease. Orthologous to human ABCE1 (ATP binding cassette subfamily E member 1).

NR:

description
PREDICTED: ATP-binding cassette sub-family E member 1

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K06174 ABCE1, Rli1; ATP-binding cassette, sub-family E, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932161.2 True 2263 mRNA 0.47 18 5445363 5457180

Neighbor

gene id symbol gene type direction distance location
smad1 smad1,LOC103023608,LOC107734580 coding downstream 12208 5403494 ~ 5433155 (-)
mmaa mmaa,LOC102789515 coding downstream 43714 5391156 ~ 5401649 (-)
zgc:152968 LOC108262836 coding downstream 60547 5357541 ~ 5384816 (-)
pou4f2 pou4f2 coding downstream 363809 5078360 ~ 5081554 (-)
ednraa ednra coding downstream 500768 4921788 ~ 4944595 (-)
LOC113541269 NA coding upstream 13777 5470957 ~ 5484612 (-)
hhip hhip,LOC107654904 coding upstream 41260 5498440 ~ 5532480 (-)
usp38 usp38 coding upstream 368230 5825410 ~ 5840770 (-)
il15 NA coding upstream 772464 6229644 ~ 6243139 (-)
znf330 znf330 coding upstream 796343 6253523 ~ 6267711 (-)
G41114 NA non-coding downstream 164140 5277951 ~ 5281223 (-)
LOC117596884 NA non-coding downstream 180574 5261191 ~ 5264789 (-)
G40992 NA non-coding downstream 633938 4809868 ~ 4811425 (-)
G40980 NA non-coding downstream 670710 4774344 ~ 4774653 (-)
G40979 NA non-coding downstream 676143 4765079 ~ 4769220 (-)
G41174 NA non-coding upstream 142804 5599984 ~ 5601143 (-)
G41300 NA non-coding upstream 418921 5876101 ~ 5876391 (-)
G41491 NA non-coding upstream 838052 6295232 ~ 6302088 (-)
G41563 NA non-coding upstream 914475 6371655 ~ 6371866 (-)
G41731 fam13a,LOC107684269,LOC107757018 non-coding upstream 1078524 6535704 ~ 6538550 (-)
lsm6 lsm6 other downstream 217396 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 539124 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 835913 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 2410810 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 2411426 3033866 ~ 3033937 (-)
gab1 gab1 other upstream 298837 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 1704294 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 1981724 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 2677461 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 3012806 8469986 ~ 8470057 (-)

Expression


Co-expression Network