LOC113537600 (rims1)


Basic Information

Item Value
gene id LOC113537600
gene name rims1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14520938 ~ 14595086 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932173.2
CGTGCGGAGGATGCGCGCGCCCGAGGGGCTGCGGTCCCATTGACTGTTCCGTCTCCCTGACAGCGGCGGCATCGGCGGCACTCGCGCCTCAGCCAACCTAGAGAGCCGCGCGGATTCGACGCCTCACCCTCAGCCCGGCATCAGCATCATCTCGAGCCGGACAAGAAAGACAACGATCCCGTTATCGAGTAGCATCCTCCGGAGGAGATATGGGCTACCGATAACTGGAAAGAGGGGGTAGAGGCGGGAGGGCGGGCAGAGGGTGGTGGGAGACCGAGAGGAGAGAATAAACTGTTATAGGAAGGGAAGAACCAACGGCGGCCGCCCCGCCACCATGAAAGGGTTGCAACGCTTGCATGAGCCGCCGATGCACCCGTGGACCATGTCGTGATTCTTGGGCTTTAGCAGCTTTCGCAACGGAAACACGAGTCCGCCAAGGAACGGGGAAAACATGTCGGCCTCGGTGGGGCCCCGCGGCGGCCCTCGCCCACCCACTGCGCCGCCCTCGATGCCCGAGCTGCCGGACCTCAGCCACCTcacagaggaggagaggaagattATCATGGCTGTGATGGTTCGGCAACGGGAGGAGGAGGCCAAGGAGCAGCAGGCCATGTTCAAAGAGGAGAAGCCCATACAAGCGAAAACAGTGAACCTGGTTGGGAACAAGAAACCTCCACAGCAGAATGACATCAGtATGCACCAGCAGTTTGCCAGCTATAAGGAGCAGGTGCGACGGATAGCGCAGGAGCCTCAGCAGAGGCAGCAGGGCCAGCACAAGGATGATGCACCGACCTGTGGCATTTGCCACAAGACCAAGTTTGCCGATGGCTGTGGGAACCTCTGTTCCTACTGCCAGACCAAGTTCTGTGCTCGCTGTGGAGGAAGGGTCTCTCTGCGCTCCAACAGTAAGAAGGAAGATAAGGTGATGTGGGTATGTAACAAGTGCCGTAAGCAGCAGGACATCCTCACTAATTCAGGGGAATGGTTTGCGGAACAGGGGCCAAAGGTGACGCCAGCGGCCCTGGAGAAAGCAGTGAGTGAGCCAGCCACGAGTGCAGATCCTGCAGGAGACAAGAAAGTGCGCTCTAGGTCTCAGATTCCTCTTGGTTCCTCTGCCTCCACTGCCCAGGACAGCCAGCTgcccacaaacacaaacaaaggaCCTGTTGCTGGACAGGCCGACATGCCTTCATCCCGATCCCGCAGTGAACCACCACGAGAAAGGAAAAAGCAACCGTCAACCTCAGATCAGAACGGCAAGCCTGGACCAAGAGCGGAGAGGCGCCGGGGATTGCCCAAACTACAGTCACAACCTTCACAGGAGTGGGAGGCTGGGGACGCTCGTCAGGAGATTCGCCGTCTGGTTAAGGCCCGATCACAGGAGCGGAGCTATGCTGAACTGGATGGAAGTGTGGGGGAGCTGAGAAGGACAGAGGGTGAGCAGAGGCCACCTCGAGAGGAACAGCGAAATGAGGTTAACTCTCCACACCATCCTGTCAAGGCCCAGCCGACGGAGCAGGAGAAACGTGTGCATCCAAAAGCACCACGGCTCAGACAGGCTGAGACAGGCATGCCTGAGAGGCAAGCTGGCGAGGCAGTCACAGAGAGTAGAACAGGCCGGAGGTGGGCAGAGGAGCATCAACCATCTCTGGAGAGCAAGCAGCAAGGAGTTATGGGGGAGAGGACCGTGGGGGGCACAACAGGATCTGCGGTGCAAGCTCCTAAACCTAACCATGCCCCTCAGCCGCCTGCCCCAGGGTTCCGTGTGGGTCCTGCTGCTCCCACCGGAACCCCTGAACTCAGGGAGGCCTCCTGAAAGAGACAGGAAGCTTCAGCCAGCCACCTGGAGCCAGGCTCGGCTGGTGTGGCGCGTAAGACCAAGCGGGAAAAAGCTGAGAGCATGCTGCGTAATGACTCCCTCAgctccgaccaatcagaatgcctGCGGCCTCCCCCACCCCGTCCCTACAAGTCAAAGCGTGGAGGGAACAAGCGGCAAATGTCAGTCAGTAGCTCTGAGGAGGAAGGCGGCTCCACGCCTGAGTACACTAGCTGTGAGGATGGAGAGATCGAGAGCGTCAGTGAGAGAGGGGACTGGGAGTGCTATCCTCTGGATCCCACGGTGTGGCATCATCCAGTTACGTGGCAGCCCTCCAAGGAAGGTGATCATTTAATCGGCCGAATTACCCTGAGCAAGCGCACGGCCATGCCCAAAGAGTCTGGAGCACTACTGGGGCTAAAGGTGGTAGGGGGGAAGATCACAGAAACAGGGAGACTCGGGGCCTTTATCACCAAAGTTAAAAAAGGAAGCCTGGCGGACGTGGTGGGCCATTTACGGGCAGGAGATGAGGTGCTACAGTGGAATGGTAAATCATTGCCTGGATTAACCACGAAGGAGGTTTACAATATTATCTTGGATTCACAAACAGAACCCCAAGTTGAGTTAGTCGTTTCAAGGCCCATCGGtgataTACCCAGAATACCAGAAACCTCACACCCTCCATTAGAATCTACAGGCTCAAGTTCCTTTGAATCTCAGAAGATGGAGCGGCCATCTATATCCGTCATGTCCCCTTCCAGTCCCAGTGGTCTGAGAGACGCTCCTCAGctgctccctggacaactctcgGTGAAAATGTGGTATGATAAAGTTGGCCATCAGTTGATCGTGAACGTGCTGCAGGCCAAAGACCTGCCCCCCAGACTGGATGGACGACCCAGGAACCCTTACGTCAAAATGTACTTTCTTCCTGATAGAAGTGATAAAAGCAAACGAAGAACGAAAACAGTCAAAAAGAGTTTGGAGCCCAAGTGGAACCAGACGTTTGTGTACTCGCATGTGCACCGGCGGGACTTCAGAGAGCACATGCTGGAAATCACAGTGTGGGACCAACCGAAAGTTCAGGATGAGGAAAGCAGTTTCTTGGGAGAGATTCTGATTGAGCTGGAGACTGCTCTGCTGGACGATAAGCCTCACTGGTACAAGCTGCAGACTCATGATGTGTCCTCTATTCCACTGCCTCACCCCTCACCGTACCTCCCCCgaagacacacccacagtgaCACACCCACTAAAAAACTGCAGCGCTCTCAGCGCATCACAGAATCAGATTATGATGATGGTATTGGCGTAGTGGCTGCAGCAGCAGAAAGTCGAccaagagaaaaggagagggaACGAgggcgagagagggagagggaaagagagagggagagagagcggaCTACACTGGAGGTTCCTGAGCAGCAGAGGTCGACACATCATCGCTCTCGCTCAGTATCACCTCACAGGGAATCAGAGAGCAGGGCAAGATCACGGCCCGCAAATGTCCCCATGCAGAGgAGTTTGGATGAGGCACAACATAGCCGCAGGTCTCGTTCACCAACCCGTTACCATGAGCATGGTCGTGTACAGGAGAGAGAATATGTGGATGACAGTGAAGTCATCTTGGTACACAGATCAGTGTGGGGTAGGAGCGCAGAGTGTCTGCACATCACAAgTGATCTGCAGCCCCCTCTTGACAGGGTTAGAAGTGCTAGTACCAACTGTCTGAGGCCAGATTCAAATTCCAATTCACCCGATCGAGAAAGGAGCACGCAGTCTCTCCCCCGCATCAGACCCACCAGCCCCAGGATCCTAATCCAACACGCCTCCCCTGAGGATGACAGCTGGATTTTGGAGCCTATTTTTCCTACTCAGGAGACAGTAAACCACCTCAGTGCAAGGCCCGGGGCACAGAGGCAGCCACGAATTCTGGACAAGCCTAGCTGTCAGAAACCTGGCAAGAAAAAATCTGACAGTGAGCGGGTTCATCCACATGCCAGCACGGCATACTCTTCATCGGCAGGAACTTCCTCATCAGCACGCAGAGGCCGACAGTTACCCCAAGTCCCGGCTAAAAGCAGTAGTGTAGAACAAGCCCTTGCTTCAGAGGAGCGAACACGGCAGATGAAGGTACATTCCTACAGGACACCAGCTCCCTCCAGTACCAGCCAGGACCTGGAGAGGGTGCTCAAGAACAAACGAGAGCTTTATAAAGAGCAGCGACGGAGCTGTGATAATGTATCCCATAAATCCTCAGACAGTGATGTCAGTGACGTGTCAGCCATCTCTCGTGCCAGCAGTGCCTCACGGATCAGTAGCACCAGCTACATGTCCATCCAATCAGAGCGGCCCAGGGGTCGCTTCAGCTGCCATGTTCGCCCATCCAGCCGGAGCATGTTGAAGAGCACGAGTGTGAGCGGTGAAATCTTCACTCTGGAGCGCACAGACGGCAGCCAGTCAGACACGGCTCTGGGAACACTGGGGACAGGAGGGAAGAAGCGGCGCTCCAGTCTTAGCGCTCGTGTGGTGGCCATCGTGGGTATTCCCTCACGACGCAGTAGGAGCACCTCTCAGCTCAGCCAAACAGAAGCAGCAAATAAGAAGGCAAAAGGCTCGAGTCAGATCCAGAGGAGTCAGGAGACAGGCATGGCAGTGGAGTATCCCCGCAATGCAATGGCTCGCCAGGCCAGTCGCGAGTCCACTGATGGCAGCATGAACAGCTACAGCTCTGAGGGGAAtcTGATCTTCTCAGGGATGAGGTTGGGGGCTGACAGCCAGTTCAGTGACTTCCTTGATGGCCTTGGACCTGCACAGCTAGTGGGGAGGCAGACTCTAGCAACACCGTCTATGGGAGATGTTCAGATCGGcttaatggataaaaaggggCAGTTGGAGGTAGAGGTGATCAGGGCACGTGGCCTTACCCCCAAACCAGGATCCAAATCGCTGCCAGCTCCGTATGTCAAGGTCTACTTGCTGGATAATGGAGCATGCAAAGCCAAAAAGAAAACCAAGATTGCACGAAAAACACTCGACCCATTGTATCAGCAGTCACTGCTGTTTGAGGAGAGTCCGCAGGGTAAAGTTCTGCAGGTAATAGTGTGGGGCGACTATGGACGCATGGACCACAAATGCTTCATGGGAGTTGCACAGATCCTTTTAGAAGAGCTGGACCTTTCTAGTACAGTGATTGGCTGGTATAAACTGTTTCCCCCATCCTCACTGGTGGACCCAACACTAGCTCCTCTCACTCGACGTGCTTCCCAGTCATCACTCGATTCAGGGCCAACAGGCGTCAGGTCCTAGTGAACAGGAGAGAGGACATGAGATAAAACATGCCCGAATAGAGCAAAGGCCCATGGCAAAAAATACAGCGCCAGAGGGGCAGCCAGGCAGGCGGACAGAATCACGATCAAAGCTTTGCTGGAGCCTGACAATCACTTCTCCTCTCGTTTATTTTTGGCCTTTGGATTGCTGAGATTTCCCTTGATCCACTCCGCTCCTTACTGcatgttctgtttgttttagcCATGTTGCTGAGATGATGAGCGAGCCCAAATTAAAAGAGGGAATGATGAGCAGCTGAAAGCAATCCGCTTTggctgacagagagagagaggagccgACTGCGGTGCTGGTTGCCTGAGTGCTTCTTGCCAATCAGTAACGTTTAGGAGCTGTTTTCTAACCATataaggagtgtgtgagagtatgcGAGACAGAGGTGTGACGGTGGATCGGTGAGAGTGAAGACAACGCTGCCCCTCCCTTGGCCTAATTGTACAGGAAGCCTGTCTGCCGAGGAGAGGCCTGAGGTCAGGGGTTAAAGGGCAAGGGTTAGTCTTCTCAAAGTCTCCCCTCCTCCTCACGAATGCTGAGTGCAGGGCCTCTCCTCATGTCAGTGTGCCACTGACTCAGAtcaggtgtgtgagaggggaGGCCAGCTTGAAAACCTTTGTCTGTTTACAGCAGTTACAACTGActgctttgccttttttttactttctcatGTATTtgatacacagacacaccttGTAGAATGTGAACACATGGCTCATTCTGACAGTTGTGTCGTATAAGCTTAAAGGAAGATGCAAAACCACATGCAGtagaacactgggagtgaggttTATTTCAGCCTGGCCAGGAGATTATAAGAATGGCCAACTGACGTAAATACACTAATACATTTGGCGTCCCAGGTTAGTGGCCCTCAGATATACTTTGAGCTCTTGAGAGTATATAGAGAACTGGTCAGTATGGACAGGCACCGTGCACATAGGTAATAGCCAGTCACTTTATTTGACTTAGTTCATTCTGTTTTTGGGACCTGCCCATAACTGAATTTCTATCCAAGTAAAGTTATTTTGAAGCAAGCACaaatgcttgattttttttaaaacaaacttttaaagaAGATTATAACAACCCAAATTATCATCAgctatttttgcattttttattttgtggtagtttaagttattaaaaaaaaattaattaataaagaaatcaagTCTTTCCCGAGCATCTGGACGAATGTGATAGTAAGTGAGAGGTGGTTTAGGAGATGGCCTGAGATGGTGACCTCCCAAAACCTGCCACCTTCTCTTCCCAACATGGGCAACAGCATGACTCTGGAACCGTTCCAAGCTGCATGCACATTTTGTAAAACAAGACagatgagaaaaaagagactaaaataaatgtgtgttagtTCCACATACTGTAGGCCAGCTTGTATGTTGCATGTACTTGTACAGTTTGCTCGTACTTGATATTAATAGATTAACCAATAAAATGAAGCCATTCATTCCATGTGTGGGCATTTGGCCAAGTTTAGCCATGCACACAGCCCTCATTTTGGGGCAGAATGTCTATGAGGAGTTTttgaattgttttctttttttttttaccctatGGATAAATAAGTTCTGTACTGTAGTACTGAGCAAACACGAGGCCCTCATTTTTACTGAAGATGTTGGTGTTCTCTGTAGTCTACTACTGTGGGCTAGAACTGAGCTAGATAATGTGTATAAAACCAGAGCTATCTATATATGGAAAATGATTATGatatatgaaaattaaaacagcatatatatatatatttatatatacatatatatatatatatatatatatatttaaaaaaaaatagtgtatcCAAGTAAATGttgcaaacagaaacaacactgcacatactgtaaatatgagTCTGCTTTTGAGGTTTACTTATATTTACAAAGTGGCCCCGTCAAAATAGATTAATGCTCTGTCTCCTGGCTCCATTGAATGGAACAAAGGCTGAGAAAGGACACCACCAGAGTTTCTGGTTCTTTCAGATATATGTGGCTATAAAATAATCACTATAATTGGGACCTCTGTTTATCTGTTACAGCATTAGAACAAAGTCCATGAGATCCTGTTTTGATAAAAAAGTTTACTTTTCATGTCCGTTATGGCAGACTTCTTTCCTTTGTCAGTATTACTCAAGGATACTGATTGTTTACAATTCATGTGTCCCACTGAAACAGAATAGAAAGTATTCACTGCAACATTTCTTGTTTGTACAACAGATGTTACTCaaatgatgtgtatgttttatattcaagagttcatttttattatttacaaataaaagacTGTGTGGAA

Function

symbol description
rims1 Enables RNA binding activity. Involved in acrosomal vesicle exocytosis; positive regulation of dendrite extension; and protein-containing complex assembly. Predicted to be located in several cellular components, including inhibitory synapse; postsynaptic density; and vesicle. Predicted to be active in several cellular components, including GABA-ergic synapse; cytoskeleton of presynaptic active zone; and glutamatergic synapse. Implicated in cone-rod dystrophy 7.

NR:

description
PREDICTED: regulating synaptic membrane exocytosis protein 1 isoform X1

GO: NA

KEGG:

id description
K15291 RIMS1, RIM1; regulating synaptic membrane exocytosis protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932173.2 True 7480 mRNA 0.51 33 14520938 14595086

Neighbor

gene id symbol gene type direction distance location
kcnq5a kcnq5,LOC107718835 coding downstream 6052 14388987 ~ 14514886 (-)
ddx43 ddx43,LOC107693529,LOC107588708 coding downstream 133565 14368187 ~ 14387373 (-)
vrk2 vrk2 coding downstream 451960 14056142 ~ 14068978 (-)
LOC117596880 NA coding downstream 487221 13852493 ~ 14033717 (-)
papolg papolg coding downstream 949128 13556873 ~ 13571810 (-)
ogfrl1 ogfrl1 coding upstream 35809 14630895 ~ 14642737 (-)
smap1 smap1 coding upstream 77995 14673081 ~ 14778488 (-)
tlx1 tlx1,LOC107588667,LOC107585374,LOC107694453 coding upstream 190354 14785440 ~ 14791568 (-)
lbx1a lbx1a,lbx1,LOC108262976,LOC107585373,LOC107716305 coding upstream 217619 14812705 ~ 14815300 (-)
LOC113542020 cyp17,LOC103036160,LOC108442132,LOC107695149,LOC107588661 coding upstream 367863 14962949 ~ 14966801 (-)
G46304 LOC108263835 non-coding downstream 229305 14289556 ~ 14291633 (-)
G46183 NA non-coding downstream 336852 14183768 ~ 14184086 (-)
LOC113543535 NA non-coding downstream 879414 13632755 ~ 13641524 (-)
G45755 NA non-coding downstream 1056199 13464496 ~ 13464739 (-)
G45622 NA non-coding downstream 1207782 13312950 ~ 13313156 (-)
G46590 NA non-coding upstream 18455 14613541 ~ 14613818 (-)
G46591 NA non-coding upstream 19430 14614516 ~ 14614764 (-)
G46576 NA non-coding upstream 22567 14617653 ~ 14625970 (-)
G46680 NA non-coding upstream 342010 14937096 ~ 14937309 (-)
G46711 NA non-coding upstream 417161 15012247 ~ 15012450 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 328695 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 1085452 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 1489742 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 1881336 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 1881615 12639252 ~ 12639323 (-)
sdhaf4 sdhaf4 other upstream 184770 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 817827 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 1849610 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 2384045 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 2876101 17471187 ~ 17476092 (-)

Expression


Co-expression Network