gabra2a (gabra2,si:dkey-52k1.6,LOC108262858,LOC107747556,LOC107666515,LOC107569424)


Basic Information

Item Value
gene id gabra2a
gene name gabra2,si:dkey-52k1.6,LOC108262858,LOC107747556,LOC107666515,LOC107569424
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20327905 ~ 20343502 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932247.2
TCTCGCGTGGTTCTCGAGCGCGAGCACTGAGCGCTGTGCACACTTCCCGCTCCCGCGCGCGGCGCTTGCTTACAGGTGGGCTCTGTGCTGAAGCTGGAGGACGCGCGAGCTGGTTTGGGGATTGAAAACAACTACACTAACCTGGAGGAAAGACTTTACAGCTGTGATACAGTTGCATCCGCGCGCACATCTTCCCTCATCAGATTCTCCTGGGCAGAAGCGAGGAGACACACTCCTCAGTCCTCGGCAGGGCTTGTTGAGAAATGAATGGACGATATTTTCGCTTCTATGGATTCTTGATCTACCTGATGTTAAATGGAGTCTGGCAGACAAGGTCAAAATCAGATGTGTCTGGTTCAGAGGCTTTCAAAAacaacatcacactttttacaAGAATCCTGGACCGACTTTTGGATGGCTATGATAACAGGCTGAGACCAGGTCTTGGAGATCGAGTGACTGAGGTAAAGACTGATATTTACGTGACCAGTTTTGGGCCAGTATCAGATGCAGACatgGAGTACACAGTGGATGTGTTCTTCCGTCAGCGCTGGACAGATGAGCGACTGAAGTTCCACGGGCCAATGAACATCCTGCGGCTCAATAATCTGATGGCCAGTAAGATCTGGACCCCCGACACCTTCTTCCACAATGGCAAGAAGTCTGTGGCGCACAACATGACCATGCCAAACAAATTACTGCGGATCATGGAGAATGGGACACTACTTTACACCATGAGGCTGACAGTGCAGGCAGAATGTCCAATGCATTTGGAGGACTTCCCCATGGACTCTCATTCATGTCCACTGAAATTTGGCAGCTATGCATATACTCTGACAGAGGTGACCTATGTTTGGACAAGAAATGCCACGCTTTCAGTGGAGGTGGCTCCAGATGGATCAAGGTTAAACCAGTATGACTTGAGGGGCCAAACTGTTGGCAAAGAAACCATTAAATCCAGTACTGGGGAATATACAGTGATGACAGTTCATTTCCATCTGAAGAGGAAGATTGGATATTTTGTGATCCAAACTTACTTGCCCTGCATCATGACTGTCATTCTGTCCCAGGTTTCCTTCTGGCTTAACCGTGAATCAGTACCTGCTCGAACAGTTTTTGGTGTGACTACAGTGCTCACAATGACCACTCTGAGTATCAGTGCTCGTAACTCGTTGCCCAAAGTGGCCTATGCCACTGCGATGGACTGGTTCATTGCTGTGTGCTATGCCTTTGTCTTCTCTGCCCTCATTGAGTTTGCGACAGTCAACTACTTCACCAAACGGGGCTGGGCCTGGGATGGCAAGAGCATTCTCAACGACAAGAAAAATGAGGGCTCTGTTATGAAGAAGAACAACGCTTATGCAGTCGCTGTGGCAAATTATGCTCCCCACATCAGTAAGGATTCAGCTTTGCCCACTGTTTCCAAGAGTGCTCCATCAGAGCCCGCTAAAGCTCAGCCTGTGGCAAAAGAGAGCAAGAAGACCTTTAACAGCGTAAGCAAGATCGACCGCATGTCCCGCATCATCTTCCCTGTGCTTTTTGGCAGCTTCAACCTGGTCTATTGGGCTACATATCTCAACAGAGAGCCTGTCATTAAGAACATGGTTCCCTCTCACTGACCATtccattaaatatgaatatacacatcacccccacatacacacataaacagacatacacattaaaatattgctTAGCTTTTGTACCTGTTTAGTACTGTGTTACGctttgcatttttgtcttactatTAAGAGTTTATACCATGTCCTTCATCTTTAAAACCACTTTCACTGCCAGGCCAATCTTCAGAATGATAACATGCCTTTTTTATTTGGTAAGGACTGTTGGtaaaaattaaaactttatttatttttattttatcagacAACGATAAAGCATTTTTCTCACAAGATTCaatattttcacttaatttttaattgTACTTGTTTCCTTCCAATGTAATCTTAATTTTTAATTGTACCTGTTTCCTTCCAATGTaatattcttcttattatataTAGATACTATCTTGCCTCTTACATAATTGTGCCAATTTGGGAAGAGCAGGTAAAATATAGGGATTTTTCCCccccctttttccttttttaaatacatgcaGTACAGTATGAGATGGTAGGATGAGAATGCTTAAGTTCTCATTCAATTGCCTAAATGTTGTTAGGAGGAAGGAAGAAGCCTGCCATCCTTTCCTCAGTAAAAGCACTGCCGATTATATCCTTAAGTGCCAAGGATGGCACATGGCACAGCTGGGATATTAATATTAGATGTAGTTTGTGCAGTCATTCTTAGAATAATTTCTCTTTCCCTTACTTGAATGTGAccttaaaaagaaaacagctcaGCACTCTGTCTGGGCCTGTGCCACTTAGATGCACTTAATGCAAATAACGTAGttcaaatgtttttcaaatgAACTTACACTTCCATTATACATTTTAAGATAGATACAATTATGAACAAGTATTTTCAGCCAGATGTCTATCTTTTTCTAATGTCAAAA

Function

symbol description
gabra2 Enables GABA-gated chloride ion channel activity and benzodiazepine receptor activity. Involved in several processes, including chloride transmembrane transport; gamma-aminobutyric acid signaling pathway; and neurotransmitter transport. Is integral component of synaptic vesicle membrane. Part of GABA-A receptor complex. Implicated in alcohol use disorder; autistic disorder; and developmental and epileptic encephalopathy 78.

NR:

description
gamma-aminobutyric acid receptor subunit alpha-2-like isoform X2

GO: NA

KEGG:

id description
K05175 GABRA; gamma-aminobutyric acid receptor subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932247.2 True 2521 mRNA 0.43 10 20327905 20343502

Neighbor

gene id symbol gene type direction distance location
gabrg1 gabrg1,si:dkey-155h10.3,LOC107747559,LOC107667066,LOC107666522,LOC107585224,LOC107569420,LOC107733747 coding downstream 10736 20309844 ~ 20317169 (-)
gabrb1 gabrb1,LOC107666521,LOC107747557,LOC107733746,LOC107585222,LOC107667065 coding downstream 48863 20262035 ~ 20279042 (-)
dapp1 dapp1,LOC107667071,LOC107747563,LOC107666557,LOC107585227 coding downstream 104224 20217216 ~ 20223681 (-)
rrh rrh coding downstream 118613 20205863 ~ 20209292 (-)
eif4eb eif4e,LOC108263665,LOC103132121,LOC103460523,LOC106937591,LOC107556921,LOC107747571 coding downstream 167361 20157144 ~ 20160544 (-)
trim8a LOC108263671 coding upstream 84369 20427871 ~ 20442232 (-)
sufu sufu,LOC107666454 coding upstream 101918 20445420 ~ 20461102 (-)
desi2 desi2,LOC107587845,LOC107747542,LOC107733777,LOC107585270 coding upstream 210991 20554493 ~ 20573783 (-)
zbtb18 zbtb18 coding upstream 276430 20619932 ~ 20629167 (-)
sdccag8 sdccag8,LOC108263444 coding upstream 406170 20749672 ~ 20802069 (-)
G49700 NA non-coding downstream 111475 20215653 ~ 20216430 (-)
G49661 NA non-coding downstream 143616 20181078 ~ 20184289 (-)
G49605 NA non-coding downstream 263394 20064256 ~ 20064511 (-)
G49606 NA non-coding downstream 302241 20020687 ~ 20025664 (-)
G49584 LOC108263592 non-coding downstream 357611 19895698 ~ 19970294 (-)
LOC113537651 NA non-coding upstream 5908 20349410 ~ 20351476 (-)
G49806 NA non-coding upstream 120391 20463893 ~ 20464950 (-)
G49836 zmp:0000000662,LOC108263473,LOC108421699,LOC107747548,LOC107569423,LOC107666523 non-coding upstream 128975 20472477 ~ 20473295 (-)
G49841 LOC108263473 non-coding upstream 134206 20477708 ~ 20478688 (-)
G49941 NA non-coding upstream 156031 20499533 ~ 20500791 (-)
atp10d atp10d,LOC107556926 other downstream 71385 20224909 ~ 20256520 (-)
metap1 metap1,LOC107556924 other downstream 122312 20182053 ~ 20205593 (-)
slc4a11 slc4a11,LOC107695019 other downstream 559771 19716600 ~ 19768134 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other downstream 660244 19614717 ~ 19667661 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other downstream 1008172 19316487 ~ 19319733 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other upstream 14432 20357934 ~ 20369445 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other upstream 1044241 21387743 ~ 21478705 (-)
plekhh2 plekhh2 other upstream 1268161 21611663 ~ 21645512 (-)
G50837 NA other upstream 1606353 21949855 ~ 21950189 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other upstream 1691783 22035285 ~ 22123649 (-)

Expression


Co-expression Network