ppa1b (ppa1,ppa1b,LOC107668792,LOC107708308,LOC107588733)


Basic Information

Item Value
gene id ppa1b
gene name ppa1,ppa1b,LOC107668792,LOC107708308,LOC107588733
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15782599 ~ 15790106 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932364.2
CCCACACACAGGCTTTTGTTGAACTTCTGAGCCCCACGTCACTGAGTCGCATTATCTCCGGACGCTTACCGCTGGCAGCCATGAGCTTCTCAACTGAAGAACGAGGAAATCCCAACACTCTGAGCTATAGGGTGTTTTACAAGGACCAAGATGGAAAATACATTTCGCCGTTCCATGACATCCCTATCTACGCAGATGAAGCCCAGAACATTTTCCACATGGTTGTGGAGGTACCCCGATGGACAAATGCAAAAATGGAGATTGCCACAAAGGACCCACTTAATCCAATAAAGCAGGACGTGAAAAAAGGGAATTTGCGTTATGTGGCCAATGTTTTCCCACATAAAGGATACATCTGGAACTATGGTGCAATTCCTCAGACATGGGAAGACCCTGGCCACAAAGACTGTGATACTGGATGCTGTGGTGATAATGACCCAATTGATGTCTGTGAAATTGGCAGCAGGgtatgCTCACGAGGAGAAGTTATTAAAGTGAAAGTCCTGGGTGTACTGGCTATGATTGATGAAGGCGAAACTGACTGGAAAGTTATTGCAATCAATGTTGATGACCCAGAAGCAAAAGACTTGAATGATATTGCTGATGTTCAGCGACTCAAGCCAGGGTACCTTGAAGCTACTGTGGATTGGTTTAGGCGATACAAAGTACCAGACGGGAAGCCTGAAAACCAGTTTGCTTTCAACGGGGAGTTTAAAGATAAGgACTTTGCCATTAAGACAATCAAAAGCACCCATGACTTCTGGAAAGCACTTATTTCACAACAGGCCAATGCAGGAGGTCTGAGCTGTAAAAACACCTGTGTGTCAGAAGCAGACAGTCCATTCTGCTTCTCTCCGGAGGACGCCAAGGCAGTTGTTGATTGTACTTGTCCCTGTGGCGATGCAGGATCCATTCCAGACTCGGTTGACAAATGGTTTTATTATCAGAAATGACAAGAGAAGCCCAATCTTTATGGACCAGCCTGATGTCTTTCATTTAGATTATGTACAAATaggcagaaataaataatttaacatgtatggaagtcATGATAGGAGTAGCAGGGAAAAGTTAACACATCttgctaaatatatatattttccgtTTAATTTAATCAGTGTGCTATTAGATTGCATACAGTTTATGATTGTTATGGAAAGTAGCAGTCTGGCTGTACTCAGGTACTAGATGGTTGCATCAATAAAGATTTTCTGCTTGTCA

Function

symbol description
ppa1b Predicted to enable inorganic diphosphatase activity and magnesium ion binding activity. Predicted to be involved in phosphate-containing compound metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human PPA1 (inorganic pyrophosphatase 1).
ppa1 Predicted to enable inorganic diphosphatase activity and magnesium ion binding activity. Predicted to be involved in phosphate-containing compound metabolic process. Located in extracellular exosome.

NR:

description
PREDICTED: inorganic pyrophosphatase-like

GO:

id name namespace
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004427 inorganic diphosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01507 ppa; inorganic pyrophosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932364.2 True 1221 mRNA 0.43 11 15782599 15790106

Neighbor

gene id symbol gene type direction distance location
sar1ab sar1a,sar1ab,LOC104930554,LOC103355135,LOC105021427,LOC107588735,LOC107668793,LOC107708324 coding downstream 435 15778870 ~ 15782164 (-)
tysnd1 tysnd1 coding downstream 4937 15774144 ~ 15777662 (-)
LOC113544455 LOC108263660 coding downstream 49846 15731459 ~ 15732753 (-)
trmt2b trmt2b coding downstream 59721 15721281 ~ 15722878 (-)
scdb scd coding downstream 64559 15711130 ~ 15718040 (-)
LOC113544337 LOC108263461 coding upstream 23459 15813565 ~ 15821008 (-)
zcchc24 zcchc24,LOC107564348 coding upstream 202108 15992214 ~ 16025302 (-)
wu:fj13e08 LOC108262408 coding upstream 237030 16027136 ~ 16032780 (-)
si:dkey-275b16.2 paox coding upstream 243144 16033250 ~ 16042031 (-)
rassf4a rassf4 coding upstream 255229 16045335 ~ 16076953 (-)
G47160 NA non-coding downstream 35825 15744540 ~ 15746774 (-)
G47158 NA non-coding downstream 48520 15733833 ~ 15734079 (-)
G47130 NA non-coding downstream 85185 15697078 ~ 15697414 (-)
LOC117596835 NA non-coding downstream 109141 15619605 ~ 15673458 (-)
G47114 LOC101463634 non-coding downstream 183393 15596729 ~ 15599206 (-)
G47213 NA non-coding upstream 221464 16011570 ~ 16013344 (-)
G47359 NA non-coding upstream 481164 16271270 ~ 16272531 (-)
G47599 NA non-coding upstream 885944 16676050 ~ 16691599 (-)
G47731 NA non-coding upstream 975603 16765709 ~ 16767510 (-)
G47735 NA non-coding upstream 998413 16788519 ~ 16788729 (-)
c3h10orf53 NA other downstream 366116 15412913 ~ 15416483 (-)
sdhaf4 sdhaf4 other downstream 997846 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 1590356 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 2347113 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 2751403 13005486 ~ 13031196 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 654590 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 1189025 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 1681081 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 1771298 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 1788072 17578178 ~ 17661419 (-)

Expression


Co-expression Network