slc25a16 (slc25a16,LOC107678603,LOC107708451,LOC107747470)


Basic Information

Item Value
gene id slc25a16
gene name slc25a16,LOC107678603,LOC107708451,LOC107747470
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18845152 ~ 18852107 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932472.2
GCACCCTATAATGAGCACCGGAGGCGGATAGCCAGTGAAAGGGACACGTGCGAAGTTTGTCCCTAATGTCCTGAATTGGCCTTATGAGGAAAGCCCGGTCATCAGGATGGCTGCACCTGATCAATACGGTCTACAATGGAAAACATTTTAACCCATTAACATTACTGCACTAGATTCACAATCTGGCAGTGTCACTCAAGAGCTAGCTAATTTGGCTAATCATTAAATTTGGCAGGGAAATGCAGTAACGCAGATTTCACGGAGACCATCTGTGATCCGGAACTGCTGCGTGTGTAGACGATCACACAGGATCACACGGGATCACACAGGATCACACAGAATCACACAGAATCACACGGGACCGGCGCAAAGTCCGCGGAGGAAACACACGGAGCCAAAACCTCTACTGACAGTTGACATTGTTGACGGATTGTGCTGAAGACATGCCTGTGCTTGAGTGCTGATCCACTAATCATGACAACCGAGGCGTCTGTCTCCTCCGCTGGTCGGTCTCAGATTGCAGGAGGGAACACTGTGCAAAGGGACTACTACTACGTCCTCCGCTCCTTTATAGCAGGAGGTGTAGCAGGATGCTGTGCCAAGACCACTATTGCACCTCTAGACAGAGTGAAAATTTTACTACAAGCTCATAATCCTCATTACAAACACTTGGGAGTGTTTGCTACACTCAGGGCTGTACCAAAAAAAGAGGGCTTCCTCGGGCTGTACAAAGGAAATGGGGCCATGATGGTCAGGATCTTTCCCTACGGGGCCATTCAGTTTATGGCCTTTGACAACTATAAAAAGttcCTTAGTACACAGCTTGGTATATCTGGGCATGTTCATCGGCTAATGGCTGGGTCTATGGCAGGAATGACGGCAGTCATTTGCACTTATCCTCTTGATGTTATTCGTGCTCGTCTGGCGTTTCAGGTGACCGGGGAGCATCGCTACACTGGCATAGGAAACGCCTTCCAGACCATCTACCTGAAGGAGGGGGGTATCCCTGGGTTCTACCGTGGTTTAATTCCAACCATCATTGGCATGGCTCCCTATGCAGgattttctttttttacatttggaaCACTGAAGAGTCTGGGACTGGCTCATTTCCCAGAGCTCCTGGGAAAGCCGTCACTGGACAATCCTGATGTCCTGGTTCTGAAGACACATGTTAACCTGCTATGTGGAGGAGTAGCAGGGGCCATTGCTCAAACCATATCCTATCCTCTGGATGTTGCCCGGAGGAGAATGCAGCTGGGAGCAGCCCTCCCTGATGCCGACAAATATCTgTCCCTTACAAAGACCCTTAAGCACGTGTATAATCAGTACGGGATTAAAAAGGGACTGTACCGTGGCCTGTCTCTCAACTACATCCGCTGTGTACCATCGCAAGCCGTTGCCTTCACCACTTATGAGTTTATGAAGCAAGTCCTGCACTTGAACTAGAGCAGGTGCTGCTCTGTCTGATGGAACGAAAGATGAAAGACTGTTTAATCTTGGTTAAAAAGAAAGTTTAACTAGCTTTCACAGCTtgtgtatatagagtaaatTGAACATTCATCGTTAATatgcttatatttataatttcataaatTAGCATAAACATCCCACGTTTCATTTATTGTATTAGATGTCCATGAATGAAATCATTATAATGTGCTCAGAAGAATTGCTCTGAGAAATGTTTGTCTTGTTACCGTTGCACTTGTATTGTGAGACTGATAGGagatttaatgttattaatcaTGTGATCATGAGGGAATTTACCTGTATaagattaaaatatgaaattaaagaTTTGGAATTTCACATCAGGCAAATATTGATCAgtgaaaattataatttaatggTTGTTGATGCAGTGGttattaaatgtacatttctaTTTCTGCAAAGCATCATTTGGTCTGGATATGGTCTATGTGTCAAGTATACCAATAAAATGTACTCTTTTCTGTA

Function

symbol description
slc25a16 Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in several structures, including adaxial cell; alar plate midbrain region; immature eye; intestinal bulb; and optic tectum. Orthologous to human SLC25A16 (solute carrier family 25 member 16).

NR:

description
graves disease carrier protein isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15084 SLC25A16, GDA, LEU5; solute carrier family 25 (mitochondrial carrier protein), member 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932472.2 True 1962 mRNA 0.44 11 18845152 18852107

Neighbor

gene id symbol gene type direction distance location
alox5a alox5,alox5a,LOC107747471,LOC107582511,LOC107690200,LOC107678516,LOC107708393 coding downstream 7355 18831551 ~ 18837797 (-)
washc2c fam21c coding downstream 16830 18810075 ~ 18828322 (-)
zfand4 zfand4 coding downstream 37555 18788701 ~ 18807597 (-)
march8 march8,LOC107095557 coding downstream 58689 18716883 ~ 18786463 (-)
vdac2 vdac2,LOC108444242,LOC107582506,LOC107747461,LOC107690181 coding downstream 133877 18700916 ~ 18711275 (-)
si:dkey-228d14.5 LOC108262905 coding upstream 46056 18898163 ~ 18903520 (-)
mat1a mat1a,LOC108263526,LOC107678534,LOC107582520,LOC107708460,LOC107733750,LOC105911600 coding upstream 159874 19011981 ~ 19018909 (-)
sfxn3 LOC108263463,LOC108441766,LOC107678536,LOC107708462,LOC107582521,LOC107570532,LOC107733760 coding upstream 184885 19036992 ~ 19044321 (-)
lzts2a lzts2 coding upstream 212926 19065033 ~ 19114569 (-)
sema4ga LOC108263187,LOC108441763 coding upstream 286388 19138495 ~ 19171153 (-)
G48938 NA non-coding downstream 517 18843753 ~ 18844635 (-)
G48476 NA non-coding downstream 671970 18167020 ~ 18173182 (-)
LOC117596862 NA non-coding downstream 753539 18087504 ~ 18091613 (-)
G48419 NA non-coding downstream 760347 18083657 ~ 18084805 (-)
G48411 NA non-coding downstream 798266 18037687 ~ 18046886 (-)
G48940 NA non-coding upstream 1406 18853513 ~ 18853713 (-)
G48947 NA non-coding upstream 38456 18890563 ~ 18890812 (-)
G48954 NA non-coding upstream 76075 18928182 ~ 18929502 (-)
G48970 NA non-coding upstream 105050 18957157 ~ 18957459 (-)
G48975 NA non-coding upstream 117484 18969591 ~ 18969796 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other downstream 231631 18330368 ~ 18613521 (-)
col13a1 col13a1 other downstream 1183733 17578178 ~ 17661419 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other downstream 1270730 17561404 ~ 17574422 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other downstream 1369060 17471187 ~ 17476092 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other downstream 1862423 16979131 ~ 16982729 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other upstream 464380 19316487 ~ 19319733 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other upstream 762610 19614717 ~ 19667661 (-)
slc4a11 slc4a11,LOC107695019 other upstream 864493 19716600 ~ 19768134 (-)
metap1 metap1,LOC107556924 other upstream 1329946 20182053 ~ 20205593 (-)
atp10d atp10d,LOC107556926 other upstream 1372802 20224909 ~ 20256520 (-)

Expression


Co-expression Network