loxl4 (loxl4,LOC107665580,LOC107601038,LOC107719235,LOC107702733,LOC102214438)


Basic Information

Item Value
gene id loxl4
gene name loxl4,LOC107665580,LOC107601038,LOC107719235,LOC107702733,LOC102214438
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16738724 ~ 16759286 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932552.2
TGAGGACCTCTTCTCAGTAGTGCACTCCTTCCTTCATTCACTTTCCCCTGATCAGGGACGCATGTGACTCAAGTGTAGCTTCCAGgattgcTGTGTCGACACTAATATGGCActggctgtctgtctctgctgGAGCTCCCTGTTCCTTGTAGCTGCTCTTGCAGTCCCACGCTCTCCTGCTAACTCAGGGCGCACACCAGCTGCTAAAGTGCGTTTGGCAGGAATCAGGCTCAGAGACAATGAAGGCCGCATTGAAGTGCTTCACAACGGTACTTGGGGAACTGTGTGCGATGACGAGGTTGACATTAAACTGGCAAATGTGGTTTGTAAAGAACTGGGCTTCCGGGGGGCCATCACATGGGCACACAGTGCCAAATATGGAGAGGGAGATGGTCCTATTTGGATGGATAATGTGCGCTGCGATGGTTCAGAGAAATCACTGAAAGAGTGCAAGTCAAATGGATGGGGTATCCACGACTGCAAACACTCAGAGGACCTTGGGGTAGTGTGTAATCCTGAGAGAAGACTGGACCAAGTGGTTTCTGGTGGGCCTAGAAGAAGCCCTTCCACTAGAAGCAATGTGAGCACCTCAAACCGTTGGCATGACATCTACTCCAACTCAAGGGCCCCTTTGCAGGGTCAGTTATCCAGACAGCGGTTACATGATCCGTCTGGCAGTAAAGTGAGGATTCAGGAAGTCCGTTTGCGGCCAGTTTTGATGGCTACGAAGAAACGTGCCCTAGTGACGCAGGGTGTGGTGGAAGTGAAGCATGCTGGGAGATGGAGGCAGGTGTGTGACAAAGGCTGGAGTCTGAACAGCAGCAGGGTGGTGTGTGGCATGCTGGGATTCCCTGATGCAGTTCAGCCCAACATGAAGGCTTACAAAAAAATATGGGATGAAAAGGTTAAGGATCCATCTACCAGGCTGAGTTTTATGGCCAAAAAGAAGAGTTTCTGGGTGGAGAAACTGCATTGCCTTGGTACAGAGCCCAGCCTGGCAGAGTGTCATGCCCAGCTCTCCATTCCTCACAGTTCTACCCCATGTAAAAATGGACGCTATGCAGTGGCCCACTGCAAACCAGGACCGCAATTTTCACGCATGTCCTCAGGGAGGCCTCCAGCCCCACATCCGATCAAGCCGGCAGTGCGTTTGAAGTCAGGACCTCGCTTGGGAGAGGGCAGGGTGGAAGTTCTGCGTGAAGGAAAGTGGGGAACTGTGGTTGATCATCTTTGGAATCGTGTCGCTGCCAGTGTGGTGTGCAGAGAACTGGGTTTTGGTACTGCCAAAGAGGCCCCTACAGGAGCCTACATGGGCCAAGGAACCGGGCCGATCCATATGAGCTCAGTTCAATGTACAGGAAGAGAACGCTCCATCTTGAATTGCCATTTCCAACCAGTCCAGCCCTGGACATTCAAACACACCCAAGATGCATCTGTCCGATGTAACGTTCCTAAGACAGGCTTGGACACCACAgtgcGGTTAGCAGGGGGCAGAGATGTGGCAGAAGGCCGTGTGGAAGTGCTCATGGAGGTTGGGGGCAGGAAGCGCTGGGGAGCAGTGTGCAGTGAGAACTGGGGTATTAATGAGGCAATGGTagtgtgcagacagctgggctatGGCTTTGCTGCACGTGCCCATCAGGACACATATTACTGGCCCGGAGACCCTAACGCTCAGGACGTGCTGCTGAGTGGGACTCACTGTGTGGGCACTGAACTGTCCATTCAGCAATGTCGCCGAAACAGCAATGTATACTGTCCCCGTGGAGGAGGACCCAAAGCAGCCGGAGTCACCTGCTCAGAAACTGCCCCTGACCTGGTGCTGGATGCACAGCTGGTTCAGGAGTCAGCGTATCTGGAGGATCGACCACTTCACCTGCTCACCTGTGCTCATGAGGAGAACTGCCTGTCTTCTTCAGCTAGCCGCATGAACTGGCCTTATGGCCACCGGCGTCTGCTGCGTTTCTCCTCCCGCATCATGAACCTGGGGAGAGCTGACTTCAGGCCCAAAGCTTCACGAGAATCCTGGATATGGCACCAATGCCACAGGCACTACCACAGCATTGAAGTGTTTACACACTATGACCTTCTCACAATCAATGGAACCAGAGTGGCAGAAGGGCACAAAGCCAGCTTCTGTCTGGAGGACACGTATTGTCCCGAAGGACTTCAGAAACGCTTTTCATGTTACAACTATGGAGATCAAGGAATTTCAGTGGGCTGTTGGGATACATATCGCCACGATATTGACTGCCAATGGGTAGATATCACAGATGTCAGGCCAGGAGATTATATCTTCCAGGTGGAAGTAAATCCGTCACTGGATATGGCTGAGTCAGACTTCATGAATAATGTAATGCGCTGTAGGTGCAGATATGACGGTCACAGAGTCTTCATGTATGGCTGTCACGCAGGGGATGCCTATAGTGCTGAGATTGAAGACTTGTTTGAACACCAGCGTCAGATCACTAATAACTTCCTCTGAGTCGTGTGTGGACAGCACACACTGTGACCTGTTACAGTATGGACTTtgaaaaaaactatttacaaacacatctgctgggaaaaaaatcacaaaagtcAAAATGCATTGATAAGTGGAGATGTAGTAACTGTTTAATTAGCACCTCAGTGCTAaccagttactgaaaatgactaaaagagaaggagatttatttatattcactgATAATTTTATTGAATGGTGGCGAATGGAATTCTAATATAGAGATATCTCTGGATTACTGGATTTAGGTGTAGACTTCTATTAACAATTTTGAATATATCAATTGGGTCGTATTTACTGGGTTCCAGTACAGTGAATTtaatacagtacattcagtAATATTCTTTGAgtgttgcactttatttattgaCCATCAGTATTCTCGTAGATATTGCCCTATCGTCACCAGGGGGTCAGTTTAGTGgtctttgttcatttttttgttgatttgttgtCTTATTCAGTATTTACCCCTCCTCCCCTCATAGttctccctttcttttctttcttcctttccatcAAGCTAATGAATTTGGGAAGTTCCTGAAGTGGTTATAACCTTATTATAGGCATTGTACAGTACAAActgcaaattaatttatttaatgctttGTTGAGctcattttatatttgaatGGAGAAaaggttattttattaatcttcacatttaataaacatgtaTGATATGTAGTTATTGTTTTAATTCAGAAACATCTTGAACTTTGCCAAGCCTCAACCCATCAGAAGCCTGAAGCACAAGAACAAGTGCAAGTTGCATATTGTAAACAATGTAAAGCTTTACTTATCGGAATTGCATATGGTCATATGCATATGGTTTATAAAGCTTGATGTAAGAAAAGACCACTGGATggggaaaaacaaaatgtttttgcattgtGCAGAGGCTCAGGCTCACAGCATTTCAATATGATATAAAATCTTTGGCCTTGGATGAAAATTTGGCAAAAATCAGCTTTAAAGTAAAACAACTTGCTTGATGGAaatgcaaatgtatttattgatgggGAGAACATCTATATTGATGAGTATTGTATTATTGCCTCACGGCTATAAATCTTTGGCCTCTTTATTACCTCAGTAGCTTCCCTTTGTTGAAATTTACTAGCAGCCACTAACTGTATAAACATTTTAGACCATAAACTGTAATAGTACACCTCAATTTACAGTTTCTTTTTCCTTAAACACATTTAAGTGAGCTTTTCACCAGCTTATAAAAATGTCCTATGTGATATGCTTTTACCATATACTGTAGTTATCATAAGGTGCCAAATGACTTACTGTTATTTTCTTAATGTATTGAGTACTCTAGGATTCTGGAGGCATCATTTTCTACATGTTTACTTATACATGCTTTTATAATGTActctgaaacattttattctcCAGTTGATATTTATTTAGAAGCCCTCATCATCTGTGTGAATTGTTGCTAGGCAAGGTTTTATTTGATATTCAATGTACACTTTTCCTGAAACCCAAACCCTGTCCTCAGCTCAGTCTAAACTAATGCTCTGTTATCCCATTTGCTCTCAGGGATTAACTGTGTGTGTCATTGGTTTTGTTCAATATTCTTGACAAATATTTGGTCAGATTAAAGGTTCTGAAGCATCCTGAAACAATTAGAAATCAATAGTCAAAGCCATTTCAGATGCTGTGGATCCTGGgtgctgatttctttctttcttttttttttttttttttttttaattactatgTCATAAAGGTGGCTTCTCACTGGTTGGCAGTCATTGCAGTAATATTAAGGTTAATGCAAAGACTGTGTTCTAATGTGAATGGAAATAACTAATCAGGTGTAAgtcagctaaatgaataaattatcaATAAATAGGAATATGTTTTTGACCAAAATGTATGTTCCTATTTTGTACTGGTAAACACaaagcaacaaaacacacatgaatatgtactgtatgtattctCTTTACATACGttctgtgtattatttttaattttgcattcattttgaaaaaatgtgttcatgtaaatataattgtttaattgTCTAAAAGATTGCTGCCTCCATTAATATAGTAGGACATGGAGTTATTTA

Function

symbol description
loxl4 Predicted to enable protein-lysine 6-oxidase activity. Predicted to be involved in collagen fibril organization and peptidyl-lysine oxidation. Predicted to be located in extracellular region and membrane. Predicted to be active in extracellular space. Orthologous to human LOXL4 (lysyl oxidase like 4).

NR:

description
PREDICTED: lysyl oxidase homolog 4

GO: NA

KEGG:

id description
K00280 LOXL2_3_4; lysyl oxidase-like protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932552.2 True 4598 mRNA 0.43 15 16738724 16759286

Neighbor

gene id symbol gene type direction distance location
crtac1b crtac1,crtac1b,LOC108443504,LOC107702729 coding downstream 14063 16702726 ~ 16724661 (-)
sfrp5 sfrp5,LOC107747303,LOC107665568,LOC107728441,LOC107601040 coding downstream 87349 16639769 ~ 16651375 (-)
zgc:171482 zgc:171482,zmat4,LOC108262817,LOC108443470,LOC107747266,LOC107665614,LOC107702738 coding downstream 149048 16518978 ~ 16589676 (-)
pgam1a pgam1,LOC108443463,LOC103038634,LOC107548630,LOC107668811,LOC107673951 coding downstream 276637 16459230 ~ 16462087 (-)
rrp12 rrp12,LOC106529656,LOC103399548,LOC104948777 coding downstream 296678 16424145 ~ 16442046 (-)
zgc:123010 zgc:123010,LOC108263560,LOC108443537 coding upstream 8296 16767582 ~ 16786188 (-)
pyroxd2 pyroxd2,LOC107586065,LOC107747264,LOC107702741,LOC107601051,LOC107665597 coding upstream 30393 16789679 ~ 16799632 (-)
nkx3.3 LOC108262822 coding upstream 82302 16841588 ~ 16843144 (-)
nkx2.3 nkx2-3 coding upstream 89066 16848352 ~ 16852884 (-)
LOC113545189 cnnm1,LOC107719212,LOC107747260,LOC107702746,LOC107601048 coding upstream 115915 16875201 ~ 16892743 (-)
G47599 NA non-coding downstream 47125 16676050 ~ 16691599 (-)
G47359 NA non-coding downstream 466193 16271270 ~ 16272531 (-)
G47213 NA non-coding downstream 725380 16011570 ~ 16013344 (-)
G47160 NA non-coding downstream 991950 15744540 ~ 15746774 (-)
G47158 NA non-coding downstream 1004645 15733833 ~ 15734079 (-)
G47731 NA non-coding upstream 6423 16765709 ~ 16767510 (-)
G47735 NA non-coding upstream 29233 16788519 ~ 16788729 (-)
G47882 NA non-coding upstream 249554 17008840 ~ 17009049 (-)
G47940 NA non-coding upstream 331096 17090382 ~ 17090583 (-)
LOC117596916 NA non-coding upstream 357668 17116954 ~ 17129613 (-)
zdhhc16a LOC108263271,LOC108443446 other downstream 282469 16444696 ~ 16456255 (-)
c3h10orf53 NA other downstream 1322241 15412913 ~ 15416483 (-)
sdhaf4 sdhaf4 other downstream 1953971 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 2546481 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 3303238 13429997 ~ 13435486 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 219845 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 711901 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 802118 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 818892 17578178 ~ 17661419 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other upstream 1571082 18330368 ~ 18613521 (-)

Expression


Co-expression Network