si:ch211-51a6.2 (si:ch211-51a6.2,LOC108263106,LOC108438184,LOC106606783,LOC107555315,LOC107565929)


Basic Information

Item Value
gene id si:ch211-51a6.2
gene name si:ch211-51a6.2,LOC108263106,LOC108438184,LOC106606783,LOC107555315,LOC107565929
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10492837 ~ 10511847 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932576.2
CCTGTAATGAAAACAGAGTGAGCTCATGGAGAGGGAGGGACGTGTGTCTGCCTGTGAACCTCGCCTCTTTTCACTGAGTGGATTAGTgagcctctctctgtctgatctgCGTTCCTACACCTCAGTCCATTTGTTCCTGATGTATCATCAGAGGAAGGCTTTACGCCTGACTTCgcttttcttttgctttcttttcttttaataaaaaaacagttttttttagtgTCGCTCCATAAGGAGTGAATGGAGCGCATGGATCCCTAACGCGCTTCGCTTGCAGGAGCAGCAGGACGTCCTGAACTGTGGTTGTATCTACTGTATCGTGAAGGACACCCAGCTGTGCTGCTTGTGGGTGCTGGGATTAGTTGCTCCCACCTCGTCAGGCTGTGTTGTTCGGGGGATTAGTGAGCGAGCAGAGAGATGGGAGAGAGGAGCTCACACCGCGGACTCTGACAGGACACCATGGCCACCTGCGCTCTCTCGCCTCTTCTACTCGCTTCCTCTTTGCTTTACGCTTTAGGACAAGTTGCACAGAAGGATGGCCACTTGGATACTCTGCAGAGTTCAGGCCCTCTGTCCTGCTTTGAGGGTTTCAAAGTACTGGGTTATTACAATGGCTCCATGTCGCAGACAGACTCAGGCTTTCCCTGTCTGAAATGGACTGAGTTCCCTGACTATATGCTGCAGTACCCAGACAGAGGGCTTGGAGATCACAGCTACTGCAGGAACCCTGACCGTGAGTCCCAGCCCTGGTGCTTCTTCAGACAGCACTCTGGAGCCATCAGCTGGGCTTACTGCAACTGCCACCAGGGTGCAGCCAGGCTGATGGGAGGAGGGTCTAACAAGAGCGGCCGTCTGGAAGTTTACCTGAATGGCCGGTGGGGGACAGTGTGTGACACACACCTGACTGACCGAGATGCAAGTGTCATCTGTCGACAGCTTGGCCTCAGTGAAATTGGTACTGCACTCAAGCACTCCTACTTTGGTCCTGGCTCTGGGCTTTTCCACTATGAACGACTTGGCTGTCGTGGCAACGAGAACTCTCTCTTAGAGTGCCGGGGCAGGAAGTTTGTCTCTGGTGACTGTAATCATGGAAATGAAGCTGGAGTGGTGTGCGCTGCACCTGAAGgAAATGGCACTCCCTTGAGGCTGGTGGGAGGCCAGGAAGACTTCGAGGGACGAGTAGAAGTGTATCATAATGGCCAGTGGGGCACAATCTGTGATGACCAGTGGGACGACATCGATGCTGAGGTGGTCTGTCGACAGCTAGGACTTGGTGGTGTGCCAAAGGCGTGGTCGTGGTCTCATTTTGGCCCGGGGGCTGGGCCCATCCTGCTGGATGGGGTACGGTGCACAGGAAATGAGCTCTCTCTGGAGGAGTGTCCTCACACACCCTGGGGCCAGCACAACTGTGACCACATGGAGGATGCTGGAGTGTCCTGTAACCCATATACAGATGGTGCAGTGCGTCTGGTGGGAGCGGATTTTCCATGGGAAGGGCGCTTGGAGGTATACCACGCTGGAGTTTGGGGCACAGTGTGTGACGACAACTGGACTGAGCAACATGCCCAGGTGGTGTGTCAGCAGCTTGGCTTCAGAGGGCATGCTGAAATAGCTCCAGATGATGCATATGGGGACGGCACAGGGCTTATTCTGTTGGACGAGGTGAGGTGTGATGGGGGAGAGAGCTCCCTGCTGGAGTGCAGCCATGCAGAGTGGGGACGCCACGACTGCTCCCACAGTGAAGATGTGGCCATACGCTGTGAGAGAGGAGGAAATACCAATGATATTACTGCAGTTCCTCCAGTTTCAGGTCCCCTGGTAAGGCTGGTGGATGGAGAGACCCGTAAAGAGGGTCGTGTGGAAGTATTCATTAACGGCGAATGGGGCAGCGTTTGTGATGATGGCTGGAATGACATCAGTGCTGCAGTAGTGTGTAGGCAGCTGGGCTTTGTTGGAGTATCTAAAGCCCGCTCCATGGCCTATTTTGGTGAGGGCCAGGGTCCAATCCACCTGGACAATGTGAGGTGTGTGGGTACAGAGTCGTCTCTGGGTGAGTGTTTAGCCGACGGGTCAGACAAACATAACTGCAGGCACAGTGAGGATGCAGGGGTCATCTGTGATTACGTGTCCCAGCCAGTAGCTGACAGCACAACAGCAACCCAGTCATGCGGCCTGAGGCCCAACACACAGCGCCGCAGGAGGAGGATCATTGGAGGAGACAAGTCACTTAGAGGGGACTGGCCATGGCAGGTGTCTCTGTGGCTAAGGTCTCAGTCCAAAAGGAACCATCCGCTGTGTGGAGCCACTCTCATCAACTCCTGCTGGGTTGTCACTGCGGCTCATTGCTTTAAGAGGTTTGGCTCTGATCCCTCACGATATATTTTGAGGCTGGGAGACTATCACACAGAAGAAAGGGATGACTTTGAGCGCACTCTCTCTCCTGAGCGCATCGTCATACACAAGAAGTACCTCAGCCAGGGCTGGGAGTACGACATTGCCTTGGTGAGGCTGAAGGGCACAGATGGGAACTGTGTATCTTTCAACCCACACACTAACGCTGCCTGCCTTCCTGCTCATGGTGACAGGAAGACAAAGAGACCTGCTGCGTGTGTCATCACTGGCTGGGGAGTTACAGACTCTGAGTACTCACGTACTTTGCTGCAGGCCTGGCTTCCCTTGCTGCCATCCTGGAAGTGCAAAAAACGTTATGGCAGCCGCTTCACTGGCCGCATGCTATGTGCTGGCAGCCTGTCAATCCATCGTCGTGTGGATAGTTGCCAGGGAGACAGTGGTGGCCCGCTGGTGTGCCAGGGTGAAGGCGGGCGCTGGACGCTAACTGGGGTCATTTCCTGGGGTCATGGCTGTGGGAACCCCAGCTATCCTGGGGTATACACTCGAGTCAGCAGGTTCCTAAAGTGGATTGAGAAGGTCACCCTGGGTACTGCTTCACTCTGAGGATAGAATATTACTATggctcatttattttaatttagcgTGTTTAAAGTATGAGATGCCTGTCAGAGGATTGAGACCATGGTTGACTGGCTTCCTTATTCAGTAGTTCACCTCATGTCCTGTTTATTCCTATTTATTTTGACTTGAAGAGCCATGTGGACAGTGTGATTGACATTTTTGATTGAGGTACAAGTATATTAAATGTACTGAATCCTCAAGTTtgaactacactatatggccaaaagtatgtggaaagTATGCGTCATACCCATATGTGAGTCTTCCAcacactgttgccacaaagttggaaacacataatttttttgtatgCTCTAGAATTAGGAtttcccttccctggaactaaggggcctagcccacacttgttcca

Function

symbol description
si:ch211-51a6.2 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in zymogen activation. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region and membrane. Predicted to be active in plasma membrane. Is expressed in tail bud. Orthologous to human CD6 (CD6 molecule).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932576.2 True 3346 mRNA 0.53 14 10492837 10511847

Neighbor

gene id symbol gene type direction distance location
zswim8 zswim8,LOC107713895,LOC107743573 coding downstream 4030 10449319 ~ 10488807 (-)
ndst2a ndst2,LOC107666426,LOC107726987,LOC107743572 coding downstream 45110 10331733 ~ 10447727 (-)
si:dkey-174i8.1 LOC108262936,LOC108438205,LOC107568550,LOC107743623,LOC107568549,LOC107696867 coding downstream 162616 10323316 ~ 10330221 (-)
camk2g2 camk2g,camk2g2,LOC107726985,LOC107666428,LOC108410509,LOC107684098,LOC100707324,LOC106606853,LOC106576966 coding downstream 174642 10255625 ~ 10318195 (-)
synpo2la synpo2l coding downstream 239750 10244156 ~ 10253087 (-)
chchd1 chchd1 coding upstream 2104 10513951 ~ 10516957 (-)
mtg1 mtg1,LOC107666383,LOC107565923,LOC107696879 coding upstream 45754 10557601 ~ 10562588 (-)
LOC113541130 NA coding upstream 55510 10567357 ~ 10568828 (-)
pbld LOC108261389,LOC108263388 coding upstream 76029 10587876 ~ 10593240 (-)
opn3 opn3,LOC107676370 coding upstream 96012 10607859 ~ 10615623 (-)
G43987 NA non-coding downstream 176389 10315725 ~ 10316448 (-)
G43982 NA non-coding downstream 187755 10291067 ~ 10305082 (-)
G43981 NA non-coding downstream 227249 10265356 ~ 10265588 (-)
G43978 NA non-coding downstream 238899 10253724 ~ 10253938 (-)
G43910 NA non-coding downstream 249955 10241941 ~ 10242882 (-)
G44103 NA non-coding upstream 141867 10653714 ~ 10655844 (-)
G44105 NA non-coding upstream 161499 10673346 ~ 10723668 (-)
G44173 NA non-coding upstream 304825 10816672 ~ 10817292 (-)
G44262 NA non-coding upstream 410462 10922309 ~ 10925258 (-)
G44271 NA non-coding upstream 441658 10953505 ~ 10956492 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 331314 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 484276 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1263953 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1639043 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1709039 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 1196767 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1499084 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1632993 12144840 ~ 12152522 (-)
nin nin other upstream 1923262 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 2012789 12524636 ~ 12534215 (-)

Expression


Co-expression Network