mtg1 (mtg1,LOC107666383,LOC107565923,LOC107696879)


Basic Information

Item Value
gene id mtg1
gene name mtg1,LOC107666383,LOC107565923,LOC107696879
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10557601 ~ 10562588 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932621.2
CCGagcagtgcgcatgcgcatgTTTGTTCCGCAGTCTGTGAATGTATAGCTCGTCAGCGTGCCTGTTTAATGCGCACTGTACTAGCATCATATCACCAGTAAATATAAACTCACATGACTGGATCATTGTTAATGTAAGCGTGATTAACCCCGGCTCACTGACTGAAGTATGACCAGTGTCTTGGCTTGATAAACTGCTGAACATGAGGATTTGTCACGCTTTACTCAGTGCTGTACAGTTCAGGACTGTGTTTGATTTCGGCCAGAGAGAAGTTGCACACTGGTTCCCTGGACATATGGCTAAAGGACTCAAGCAAATGAGAGCTAGCCTGAGGAAGGTTGATTGCATCATTGAAATCCATGATGCCAGAATACCATTTTCTGGAAGAAATCCTTTGTTTCAAGAGAGCCTTGATGTCCGGCCACATTTACTCATACTGAATAAGATGGACCTGGCAGACACATCAAACAAATTGAGTATCCTGAAACAGCTTGAGAGAGATGGAGTTAAGAACGTCTTGTTCACAGACTGTCTAAAGCAAAGAGACGAGAGTATTAAAAAGATAGTTCCTCTTGTAACAGACCTAATTGAGAATGCACCTCGTTTCCACAGAGAGGAGAACAGAAGTTATTGCCTCATGGTGATTGGAGTGCCAAATGTTGGGAAATCTTCATTGATTAATGCTTTAAGAAGAACAAACCTGAAAAAAGGCAAAGCCTCAAGGGTTGGAGGTGAACCTGGAATTACTAAAGCTGTCCTGACCAAAATCCAGGTGTGTGAAAGACCCATCATACATTTGCTTGACACACCGGGAGTGCTGTCTCCTAAGATCGAGAATGTAGAGACTGGGATGAAACTCGCCTTATGTGGTACTATACTGGACCACTTGGTTGGTGAAGATATCATAGCTGATTATCTGCTTTTTTCACTCAACAGACTCCGGCGGTTTGGCTATGTGGAGAGGTATGATCTAGACACACCATCTGATGATATTCAACATGTGCTGAAGTGTATTGCTGTTAAGTTAGGCAAGACTCAGCGAGTCAAAGCCATCACAGGAGTAGGCGACATTACCATCAGAATGCCTAACTACACCGCTGCAGCCTATGACTTCATCAGAGCTTTCCGTAAAGGAGAGCTGGGCAAAGTCATGCTTgactaataaaacacaaaacatgttgCTTATGTTGATGAGAGATTCATGATATTCATGGTAATGGCAATTGTGATAATCCTGTATTAATATATTGATTAAATTCTATTGCACAAAGATGCTTTGGTGCTGTTTCTTACAGTTCTCTGATGTAATACTAATGAAATACTGTgtgcaaacaataaaatatatacttacataaaaacagattttcctATGTAATATTAAAACAGCACCTATAAATAAGTGATACAGTgactaattttatttaaatatcttttacAAAATGCTCTAGCTATGATTTTTCCCAGtcagtcatatatatatatacacacacatacatacacacacacacacacacacacacacaatgatatTTCCAACTCTGGGCATATAATCATTTCACAGTCTTAGTGAAAGTTGGTTGCAGAATAATATGAGATCATAACATCGCTTGAAGAATACAGTACTTATACAGTACAGATAATGGAAACAAGCAATAAAAAAGTCACATTAAGCTATCTATATGTGATTCTAAAAATCTTATCTAACAGTTGGGGACAAGGTTGTCCTGTCACATTGTTTAATCTGTAATTGTGTGACTAAACATTGAA

Function

symbol description
mtg1 Predicted to enable GTPase activity. Predicted to be active in mitochondrion. Orthologous to human MTG1 (mitochondrial ribosome associated GTPase 1).

NR:

description
mitochondrial ribosome-associated GTPase 1 isoform X1

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005761 mitochondrial ribosome cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K19828 MTG1; mitochondrial GTPase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932621.2 True 1768 mRNA 0.39 11 10557601 10562588

Neighbor

gene id symbol gene type direction distance location
chchd1 chchd1 coding downstream 40644 10513951 ~ 10516957 (-)
si:ch211-51a6.2 si:ch211-51a6.2,LOC108263106,LOC108438184,LOC106606783,LOC107555315,LOC107565929 coding downstream 45754 10492837 ~ 10511847 (-)
zswim8 zswim8,LOC107713895,LOC107743573 coding downstream 68794 10449319 ~ 10488807 (-)
ndst2a ndst2,LOC107666426,LOC107726987,LOC107743572 coding downstream 109874 10331733 ~ 10447727 (-)
si:dkey-174i8.1 LOC108262936,LOC108438205,LOC107568550,LOC107743623,LOC107568549,LOC107696867 coding downstream 227380 10323316 ~ 10330221 (-)
LOC113541130 NA coding upstream 4769 10567357 ~ 10568828 (-)
pbld LOC108261389,LOC108263388 coding upstream 25288 10587876 ~ 10593240 (-)
opn3 opn3,LOC107676370 coding upstream 45271 10607859 ~ 10615623 (-)
cdc42ep3 cdc42ep3 coding upstream 87865 10650453 ~ 10659241 (-)
LOC113545523 cyp1b coding upstream 168943 10731531 ~ 10735897 (-)
G43987 NA non-coding downstream 241153 10315725 ~ 10316448 (-)
G43982 NA non-coding downstream 252519 10291067 ~ 10305082 (-)
G43981 NA non-coding downstream 292013 10265356 ~ 10265588 (-)
G43978 NA non-coding downstream 303663 10253724 ~ 10253938 (-)
G43910 NA non-coding downstream 314719 10241941 ~ 10242882 (-)
G44103 NA non-coding upstream 91126 10653714 ~ 10655844 (-)
G44105 NA non-coding upstream 110758 10673346 ~ 10723668 (-)
G44173 NA non-coding upstream 254084 10816672 ~ 10817292 (-)
G44262 NA non-coding upstream 359721 10922309 ~ 10925258 (-)
G44271 NA non-coding upstream 390917 10953505 ~ 10956492 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 396078 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 549040 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1328717 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1703807 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1773803 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 1146026 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1448343 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1582252 12144840 ~ 12152522 (-)
nin nin other upstream 1872521 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 1962048 12524636 ~ 12534215 (-)

Expression


Co-expression Network