LOC113537959 (znf518a)


Basic Information

Item Value
gene id LOC113537959
gene name znf518a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11044906 ~ 11053251 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932719.2
TTTTGGGTTTCTCTGAAGGTGTAAGTCTGGCTGAATGCGTTCAACCTGAACTTGCTTAAACAGAGTAACATGATCTTCTGCCTTTGAAGGCGGGCTGTTTGTCGCTGTAGTATTTGGGTGACGTCCACTGAGTTAATATGACTGTTATAAACTGTTGATAGAATCGCTGAAGAGGAAGCACATGTCTGTCCTAGTAAGCTGAGGCCACCGTTTGTATTGCAGGGCTGCAAACAAATATTGCGAACTGCCCAtgcaacacatacacaccaattCTCcgaaagagggggaaaaaaacaacccGGATACTTGTTTTCCAGTGAAGTGGCACACGCCGGTAATCGGTGTTGATCGGCTTGGCTGGCTGGGAGCTCGGAGCTGGGAGCTCGGGGGGGAGACGCGCTGTGAGGCTGTGACTGACTGAGTGTCATGGCCGCCGCCCGCTGCTGACGAACCGGGTTACAATATGAGGACGCGCGACACCACGAGTCTATGATATGAACATGGAAGTGGAACAGACAAACCCAAGCAGCCATAATGAGGATCAAGCCAGTGACAATGACAGAGGCAACTGGCGTAGACGCCTCCGACTCAGGAAATCCTCAGCTTTGTCTCACACTGTGAATAGTACAACTGAAGAACAGACGGTCGATGAAGAATTGACCAAGGAGTCATCACAAAACGAACAAAAGGATCACCAAATAGTGGACAACGCTAGCAGCAAGCTCACATTTACTTGCTCTGATTGCAAGGATGGCACAAGATTTAGTCCAGATGGTTtgttaaaacactttaaaagctTTCATGGAGGAAAAGGACACCCACCGCCTTTTCCTTGCGACATGTGCAGTTTTGTTGGTTCTGACTTTACTACCATGCAGCAGCATtacctgaaacacaaacactctaGGCTCACATCTGAGATGTGCAGTGACAAAGGTTTGGAAACACCCTCCCAACTCACAAAGCATtgtcaaacacacaacaatcaaTATCAATGTGAAAAGTGCAAGTTTTCTACAAAGGAGCTCACACATTTTCTACATAACTCTTGTCCACACAACACTGTACCAGCTATAGACAGTAGTGAAATGTCAGGTGTTAAGCCCATGAATGGTGAACTGAATAGGAATCTTTTGGCTGATGCTGCAGGTGAACCCCAGAAAGATGAGCTACTAAAGCACATGACTACTGCCTGCCATCGTGGGTGGAGCAGAAAGAATTGGTGGAAAAATAGAGATGTTGccccaaaaaaacccaaacaaactgCTTCAGACATCAAATTCTTGACTCCAAATTCAGAAATCCAGTGGACATCTGCAAAATTTCTGCCTTTCTCAGCTGCAGGTTTGCTTGATGAAAACGGTGAACTACTACATCCAACGCGGACCTTAGAGGAGACTAAGCAGTTTCTGGAAAGGACAGTTAACTGTGGAAGAAAATGGCCAGCGACTCTAAAAGGTGAACCAGATCTCTCATCTCTGTCCTGTCCCGGACCCTTCCTCTCTGAGCCAAAGATGAAGCGAAGTGTCACATCACTTCCTGTACTGAATTCTGGGAACGAACTTTCTGGTCTCATGGAAAAGAACAATATCTCAGTTCCACCTGATTGCACTACAAAGGTTGTTGGTTTCAAGATGGTGGATGGAAAAAAGCATCTTGTTCTTAAAGTCATACCTTCAGCCAAGCCAGAGGTTTCTTCAGACACAGGAGAAGAACCTGCAAGATTAAACcaggaagaaagaaatgatATACAATTAGACCCTCATATTGAGAGGCCCAGTGATCAAATGTGCAGTGAATCAGGCAATATTACCACTGCAGATTCCACAATCAACGGCTACGATTCTACCTCAACTTCACACCAGCCCAAAAAACAAGGACttggtgaagaagaagaagaagaagaagaccaaGATACAATAGGAGATGCATCTCAGGTTGataacactgaaaatgactGTAGCAATGACCTATGTGCGTTCAGTGACAGTCCTGATGCACCTGCACAACTCACTCTCTCAGGAATAGAGGAGGTTTTTAATGTAGTAAGTCAGACTAAGAATGAAAAACCAGCATCTCCTGAGGAAATGTTTAACTCTAATGACACAAATGACCTCAATGGAGAAAATACAGATGTGCCAGGGGAAGAACATTCTGTCAGAGAGGCAGATATCCAAACCCTGCAAACAAATATGCAGGAGATAAGTgacaaaccaaaacacacagacaatcaGGAAAGAGCAGCAAGAGATTATCAAGAAATTAATTCTGAGCCTTCCACAAGTCAAGATGATATGAGTGTTGAAGATATGTCTTCCAGTATTTCATCTGATTTTGGCAGCATGGAAGAGGGAATAAACTCCCAGCTCATAACCTTGATgtctgagaaagacagaagccCTGATACATACATGAAGAATGTGGATAAAAAGTCAGTGGAAGAAGCAACTATAATACAATTGCCTCTGGATTACTGGAATGAACAGAAAATGGAGAAAGTTTTAAACTCTCCCACAAATCAAAACGGAGTAGCCATGATAGAATCGAACATTATTGATCCAAACGTAGCTTCCCCTCACAAGAATACTACTGACTCTCTGTTTATTTCCCCAAGTGAACATGGAAGCCTGTTTTTCCAATACAGTGGAGATGAGAACACAAACAACATAGACCCTAGATATGCTCATGTCCCCCCAGATCAGAACTGTACAATGGAAACTGTAGAGGAACCTTATTTACCACTGCTATCGCTCGAAGACTCTTGCCGTAATCCAGACCTGTATCAGACACTCGAAGAGCTCCCCGTTACCACAGTAAGCCATTTGCTTGATGATTCTGAAGTTACGTACAGAGGTATTACCTCTCAGTCTGAACCAGGTAGCATGGCTACCCAGCAAGTGGGTATGCACTCACCCAAAGCCATACCAGTAGCAGCAGTGACTAATGACAAGGCCACTTCACAGCTACCACTAATGACTGAACCTACTATCGGCAGTAGGAGACAGCGAGAACCAACCACAAAAGACTCTCAGGGACGCATCTCAAAACCTAAAAGACGGCTTGTTCGAAATTCCCAAGAAAGCAAGTCATCAGCATCTATCCCTTACTGGGAACCGCCTGCTCCAGAAATAGAAAGGACTCTACGGCTCTTTCCTGTTCGCTCCTCACAGCCTGTAAAAGTACCACGTCTAAACCAGCCTGTTGTAGTCCTCAATCACCCGGACACGGATATTCCCGAAGTGGCAAACATTATGAGATCAGTTCACAGGCACAAAGGGGCTGTGCAAAGGGTCGTCCTTTCTCAGGGAACTCTAAAAGCCCTTTCAGAGCTTAACTGTGACACATTCCGTAATATATGTGCAGACAACTTGCAGTCGTCTCTCTACAGAAGAGTGCGGCCTCAAGGGACAGTTAAAGAAAGGTTCATCCTCAATCTGAAGCTGAAGAGGTTAGGTGGGAATAAGTTTAAGGTGGCAAATCTAAGCTCTAATGCTACCCAGCTTCAGTCAGGCTTCAGGTGCTGGTTTTGTGGTCGCCACTTTAAGAACCAGGAGGTGTGGGTAGGTCATGGTCAGAGGCATATTATGGAGGCTACACGCGACTGGAACAAGTTATTCAACAGTGAAGGGCAGGGTAATGGCGCAGAGCAGCAATCCTTCTATTGAGCTTGTGTGATTTCATAAGCATTGCTTCAtggaagccatttttttttggtgcattGATTGTTTTAGAAGATTTTGAATAGGCTGGAACGAGGTTTATACAGCTCAGGGTTCGCAAAACAGGTCATGTAATGTGTATTTCTGGATTTTTGAGCTTTATCAGCATGTCACTCTTAGTAGTGTTAGGTTGATAAACCATCTCAGGGACAGTAGGtcagaattatttatttgttctttttacTTTGGTGTCAGTGTACGTTATTGTAAAAGCAATatgcattatttatataaagattTCAAAAGCACTTGTTTATAATGTGGTCTGACCAAAATAAAATAGCATTGCTGTAGAATTTATTTAACTGATCTAAAAACAGCACTATCTGTTGGATTACTTTATTTATAGCTTTAATTACGTCCATCTAACTGaagatgttgattttttttgttgaatctgctgataaatatattaatgaattatttgaCAAAAatccatctttattttttttgcattaatttaatatgtaataattgcTTACTGGTTTTAAGCTGAGCTCATGTCTTTGCcgtt

Function

symbol description
znf518a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

NR:

description
PREDICTED: zinc finger protein 518A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932719.2 True 4233 mRNA 0.43 3 11044906 11053251

Neighbor

gene id symbol gene type direction distance location
cpeb3 cpeb3 coding upstream 70233 10927320 ~ 10974673 (+)
ide ide,LOC107665588 coding upstream 150735 10866397 ~ 10894171 (+)
sfxn4 sfxn4 coding upstream 188769 10849735 ~ 10856137 (+)
tm9sf3 tm9sf3,tm9s3 coding upstream 200615 10825222 ~ 10844291 (+)
LOC113537521 abhd12 coding upstream 220250 10816842 ~ 10824656 (+)
hs3st1l1 LOC108262815,LOC108426770,LOC107720583,LOC107565063,LOC107750130,LOC107686529,LOC107562391 coding downstream 201370 11254621 ~ 11294980 (+)
trnag-ccc NA coding downstream 538084 11591335 ~ 11591405 (+)
nkx6.2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding downstream 759534 11812785 ~ 11815652 (+)
LOC113542347 stk32c,LOC107670801,LOC102790870 coding downstream 984250 12037501 ~ 12120513 (+)
LOC113544275 LOC108262946,LOC108426851,LOC107708194 coding downstream 1080848 12134099 ~ 12143029 (+)
G44211 NA non-coding upstream 39916 11003160 ~ 11004990 (+)
G44182 NA non-coding upstream 66669 10974842 ~ 10978237 (+)
G44060 opn3 non-coding upstream 429320 10615146 ~ 10615586 (+)
G44059 opn3,LOC106939390,LOC107676370,LOC106911851,LOC103148276,LOC107549142,LOC107665579 non-coding upstream 433100 10611479 ~ 10611806 (+)
G44044 NA non-coding upstream 484383 10558629 ~ 10560523 (+)
G44222 NA non-coding downstream 324 11053575 ~ 11053853 (+)
G44221 NA non-coding downstream 827 11054078 ~ 11055854 (+)
G44398 NA non-coding downstream 244241 11297492 ~ 11297714 (+)
LOC113545104 NA non-coding downstream 264534 11317785 ~ 11318875 (+)
G44463 NA non-coding downstream 331541 11384792 ~ 11385164 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 436202 10594574 ~ 10608704 (+)
sprn sprn other upstream 486611 10552259 ~ 10558295 (+)
trnak-cuu NA other upstream 2575025 8469624 ~ 8469881 (+)
G42685 NA other upstream 2578594 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 3373496 7649198 ~ 7671410 (+)
dntt dntt other downstream 46342 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 629613 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 653684 11706935 ~ 11707005 (+)
LOC113544122 NA other downstream 692497 11745748 ~ 11766414 (+)
trnay-gua NA other downstream 1583069 12636320 ~ 12636406 (+)

Expression


Co-expression Network