LOC113537982 (kcng3,LOC107758134,LOC107756869,LOC107590001,LOC107586474)


Basic Information

Item Value
gene id LOC113537982
gene name kcng3,LOC107758134,LOC107756869,LOC107590001,LOC107586474
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21954905 ~ 21960399 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932766.2
TTTGACAGCGGCACGGTGACGCCTCAGTGAGACGCTGTGTGCGCGTAACGGCGCGCGCCTCCGCACTTTCTTCCGCGTCGCCGCTCGCGTTTCCAAGTTTTCTCTCCAAACCTAATGTCCGCGGAGACTGCATCAGGGTCTTTAGAGTTGATGCCAACCTTTAGTGCTCCACCTGAAGACCGCCTAAACATGCGCTCTGAGCCTAATGCGCAGCGACGGAGTTTATCCATTTGCCTACAGCTCGCCAAAATTGGCGCTTTTCTCTCGTGTGCTCGCTGAACGCTCCCGAGGATGAAGTTTGGCCAAAGCGTTTGCATCTTAAACGTGGGCGGCACGCGGTACGCTTTTCCCATGGATGTGCTGAAGGACTTCCCTCTGAGGAGAGTGAGCCGCCTGCACAGCTGCGCGTCGGAGCGAGAGGTGCTCGAAGTGTGCGACGACTACGATCGGGAGCGCAACGAGTTCTTCTTCGACCGCCACGCTGAGGCTTTCGGCTTCCTCATGCTCTACGTGAAGCACGGCAAACTGCGCCTGGTGCCACGCATGTGCGAGCTCTCCTTCTACAACGAGATGATCTACTGGGGTTTGGAAAGCTCGCACCTGGAACTGTGCTGCCAGCGTCGTCTGGACGATCGCATGTCCGACACATGCACCCACTTCACCGAGGAGGAGCGCCGCGTCGGGGACAAAGACGACCAAAAGGAGCACGAGCAGCGGAGGCAGCGAGGCACTGGCCGCGTTAAGGACGCCAAGTGGCTCGAGAGCATGCGCAGGACCTTCGAGGAGCCCGCGTCCTCAGTGGCCGCGCAGATTCTCGCTTCCGTCTCCGTCCTCTTCGTCATTGTGTCCATGGTGCTCCTGTGCGCGAGCACTCTGCCCGACTGGAAAACAGCCGAAAGTAACATGGTGGAGGAGCACAGGTACACAGAGTCTATAGACCATCCGGCCGGGATCATCGAGGCGGTGTGCATTGGCTGGTTCACAGCAGAGTGCATCGTCCGTTTCCTTGTGTCACGTGACAAGTGTGAGTTTGTGCGACGTCCACTGAATATCATTGACCTGCTGGCCATAACGCCTTATTACATCTCCGTGACCATGACAGTCCTCACTGGTGAGAACTCACAGCTGCAGCGGGCTGGCGTGACACTGCGTGTACTGCGCATGATGCGCATCTTCTGGGTGATCAAGCTGGCTCGCCACTTCCTGGGCCTGCAGACGCTGGGCCTAACACTGCGCCGCTGTTACCGGGAGATGGTCATGCTGCTGGTGTTCATCTGCGTGGCCATGGCCATCTTTGGGGCCCTGGCCCAGCTGCTTGAGCATGGACTTGACCTGAAGTCCAGCAATGAGGAGTATGCCAGCATCCCTGCCGCCTGCTGGTGGGTTATTATCTCCATGACGACTGTCGGCTATGGAGACATGTACCCCATCACCGTGCCAGGGCGTGTGCTAGGAGGCCTTTGTGTGGTGAGTGGCATAGTGCTGCTGGCACTGCCCATTACTTTTATCTACCACAGCTTTGTGCAGTGCTACCATGAGCTCAAGTTTCGATCTGCTCGCTGCACCAGGAGTCTCTCGGCTGAGTTCCTCAACTGACTGTGTCTCTGTCAGACTTTAGTGTGGACCTGTCTCTCATCACTATTTCAATAATAGATTCAGTTGGTCCTCTAGGCTCAGTGATTGATCCAACTCAGTCAAATATCTGGTCTCAGGTAGAGTTTAGGGGCTTGGTCTTAAATGAGTTTACATGTGCTTAGCCCATCTGGTACTCAACTCAGTCCACTGAGGAGCTCAGTGTCTACAGAGATTAGTTCCAGCCCTGCTCCACATAAATTAATTTCACTAGAAACAAAGACTGGAACCCATTCAGTCAGGTCAAGTGTTGTGGTGCATAGTTGGAACAAATACTGTGGACTCTGTGTCCCTCCATGGTCCAGGTTGAGAGTCCATGGTTTACCCTGCAAGTCCACCTCTGACATACAAATTTTCAGGAAGCCAGGATTCACTCAGCTGTGCTGTTTTTACCATAGCGACAGTTACTGGGCTTTCACAGTCGTAGGCAAGGCTACCATGGAAACATTGGCTTTCAGACCATATATCCCGGTCAGGGGCAAACTACTGAAACTGCTGGTGGGCAGCTTTGACTTGTCTACCAGAGACCTCAAGCACACTCGTCACGGGCTAAAAAGCTTCATCCTCACAGCCAGACAGGCATGCACTTCATCCGCTAGCTGTGGTATGCAGCCACTGAAAGATTTTAGTTTCTGTCAACTAGACATCCTACAGTTTGGGCAAACATACAGGAGAAAAACAATTCATTTCACTCATTTCACCGAgttctttttaattataaagGCATTGTTTGTATAAAAACAAGTTCCCAGAACTCAGCAGTCCAGCTTCCCTGAAACAAAACGTTGGGTGGTTATATAAGCATTACAGGGTGAAATGTGCAAACACTCATTGAAATTATTGTGTAAAATCCAATGATGTGTGACACAAAATCTGCAGGGATATTGGAAAAccaagagcgagagagagagagagaaatagaaagagagcaGTAGAGAGGACTGATGCTTAGCTGGGGAGGCAACTGTGCAGCATTGGCAAATATGTAAAGTGGAACACAGTGAGCTGCTACTGAGTGAGAACAGTGATAGATGGTTTGATTGGCCATGCAATACATATAAAGTTCGCCCCAATTCACCACCGGCATGCCTCCCTTGTAGCTCAATATATCTTCACACTTGAGCAGTGACGAGCTTTGAGTATTGTGCTATACTATGACAAAAACTAGTTTTCATAGAAAGCCCTCTAGAGGGTTTAAGAAGGATCCCTTTTTCTGTTCAttggctttttttaatttagatttgCATTTttcaggattattattattgcaaaaaaTTATCCTGCTCagactaaaaagaaaaatatactgACAAAACTGCATGTAAATCAGTTAGTTATGCTAAGGACTCTAGCTATTCATCACATGCACATCTTATTTCAAAGAAAAGGAAGGTGTAATATCACACCCAAGAAACAGGTGAAAAAAGCAACTTTGACTTTACTGAAGATcacattctaaaaaaaaaaa
>XM_026932775.2
TTTGACAGCGGCACGGTGACGCCTCAGTGAGACGCTGTGTGCGCGTAACGGCGCGCGCCTCCGCACTTTCTTCCGCGTCGCCGCTCGCGTTTCCAAGTTTTCTCTCCAAACCTAATGTCCGCGGAGACTGCATCAGGGTCTTTAGAGTTGATGCCAACCTTTAGTGCTCCACCTGAAGACCGCCTAAACATGCGCTCTGAGCCTAATGCGCAGCGACGGAGTTTATCCATTTGCCTACAGCTCGCCAAAATTGGCGCTTTTCTCTCGTGTGCTCGCTGAACGCTCCCGAGGATGAAGTTTGGCCAAAGCGTTTGCATCTTAAACGTGGGCGGCACGCGGTACGCTTTTCCCATGGATGTGCTGAAGGACTTCCCTCTGAGGAGAGTGAGCCGCCTGCACAGCTGCGCGTCGGAGCGAGAGGTGCTCGAAGTGTGCGACGACTACGATCGGGAGCGCAACGAGTTCTTCTTCGACCGCCACGCTGAGGCTTTCGGCTTCCTCATGCTCTACGTGAAGCACGGCAAACTGCGCCTGGTGCCACGCATGTGCGAGCTCTCCTTCTACAACGAGATGATCTACTGGGGTTTGGAAAGCTCGCACCTGGAACTGTGCTGCCAGCGTCGTCTGGACGATCGCATGTCCGACACATGCACCCACTTCACCGAGGAGGAGCGCCGCGTCGGGGACAAAGACGACCAAAAGGAGCACGAGCAGCGGAGGCAGCGAGGCACTGGCCGCGTTAAGGACGCCAAGTGGCTCGAGAGCATGCGCAGGACCTTCGAGGAGCCCGCGTCCTCAGTGGCCGCGCAGATTCTCGCTTCCGTCTCCGTCCTCTTCGTCATTGTGTCCATGGTGCTCCTGTGCGCGAGCACTCTGCCCGACTGGAAAACAGCCGAAAGTAACATGGTGGAGGAGCACAGGATCATCGAGGCGGTGTGCATTGGCTGGTTCACAGCAGAGTGCATCGTCCGTTTCCTTGTGTCACGTGACAAGTGTGAGTTTGTGCGACGTCCACTGAATATCATTGACCTGCTGGCCATAACGCCTTATTACATCTCCGTGACCATGACAGTCCTCACTGGTGAGAACTCACAGCTGCAGCGGGCTGGCGTGACACTGCGTGTACTGCGCATGATGCGCATCTTCTGGGTGATCAAGCTGGCTCGCCACTTCCTGGGCCTGCAGACGCTGGGCCTAACACTGCGCCGCTGTTACCGGGAGATGGTCATGCTGCTGGTGTTCATCTGCGTGGCCATGGCCATCTTTGGGGCCCTGGCCCAGCTGCTTGAGCATGGACTTGACCTGAAGTCCAGCAATGAGGAGTATGCCAGCATCCCTGCCGCCTGCTGGTGGGTTATTATCTCCATGACGACTGTCGGCTATGGAGACATGTACCCCATCACCGTGCCAGGGCGTGTGCTAGGAGGCCTTTGTGTGGTGAGTGGCATAGTGCTGCTGGCACTGCCCATTACTTTTATCTACCACAGCTTTGTGCAGTGCTACCATGAGCTCAAGTTTCGATCTGCTCGCTGCACCAGGAGTCTCTCGGCTGAGTTCCTCAACTGACTGTGTCTCTGTCAGACTTTAGTGTGGACCTGTCTCTCATCACTATTTCAATAATAGATTCAGTTGGTCCTCTAGGCTCAGTGATTGATCCAACTCAGTCAAATATCTGGTCTCAGGTAGAGTTTAGGGGCTTGGTCTTAAATGAGTTTACATGTGCTTAGCCCATCTGGTACTCAACTCAGTCCACTGAGGAGCTCAGTGTCTACAGAGATTAGTTCCAGCCCTGCTCCACATAAATTAATTTCACTAGAAACAAAGACTGGAACCCATTCAGTCAGGTCAAGTGTTGTGGTGCATAGTTGGAACAAATACTGTGGACTCTGTGTCCCTCCATGGTCCAGGTTGAGAGTCCATGGTTTACCCTGCAAGTCCACCTCTGACATACAAATTTTCAGGAAGCCAGGATTCACTCAGCTGTGCTGTTTTTACCATAGCGACAGTTACTGGGCTTTCACAGTCGTAGGCAAGGCTACCATGGAAACATTGGCTTTCAGACCATATATCCCGGTCAGGGGCAAACTACTGAAACTGCTGGTGGGCAGCTTTGACTTGTCTACCAGAGACCTCAAGCACACTCGTCACGGGCTAAAAAGCTTCATCCTCACAGCCAGACAGGCATGCACTTCATCCGCTAGCTGTGGTATGCAGCCACTGAAAGATTTTAGTTTCTGTCAACTAGACATCCTACAGTTTGGGCAAACATACAGGAGAAAAACAATTCATTTCACTCATTTCACCGAgttctttttaattataaagGCATTGTTTGTATAAAAACAAGTTCCCAGAACTCAGCAGTCCAGCTTCCCTGAAACAAAACGTTGGGTGGTTATATAAGCATTACAGGGTGAAATGTGCAAACACTCATTGAAATTATTGTGTAAAATCCAATGATGTGTGACACAAAATCTGCAGGGATATTGGAAAAccaagagcgagagagagagagagaaatagaaagagagcaGTAGAGAGGACTGATGCTTAGCTGGGGAGGCAACTGTGCAGCATTGGCAAATATGTAAAGTGGAACACAGTGAGCTGCTACTGAGTGAGAACAGTGATAGATGGTTTGATTGGCCATGCAATACATATAAAGTTCGCCCCAATTCACCACCGGCATGCCTCCCTTGTAGCTCAATATATCTTCACACTTGAGCAGTGACGAGCTTTGAGTATTGTGCTATACTATGACAAAAACTAGTTTTCATAGAAAGCCCTCTAGAGGGTTTAAGAAGGATCCCTTTTTCTGTTCAttggctttttttaatttagatttgCATTTttcaggattattattattgcaaaaaaTTATCCTGCTCagactaaaaagaaaaatatactgACAAAACTGCATGTAAATCAGTTAGTTATGCTAAGGACTCTAGCTATTCATCACATGCACATCTTATTTCAAAGAAAAGGAAGGTGTAATATCACACCCAAGAAACAGGTGAAAAAAGCAACTTTGACTTTACTGAAGATcacattctaaaaaaaaaaa

Function

symbol description
kcng3 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Orthologous to human KCNG3 (potassium voltage-gated channel modifier subfamily G member 3).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily G member 3 isoform X1

GO: NA

KEGG:

id description
K04902 KCNG3, KV6.3; potassium voltage-gated channel subfamily G member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932766.2 True 3100 mRNA 0.50 2 21954905 21960399
XM_026932775.2 False 3070 mRNA 0.50 2 21954905 21960399

Neighbor

gene id symbol gene type direction distance location
hcar1-3 NA coding upstream 37237 21914549 ~ 21917668 (+)
haao haao,LOC107727361,LOC107699283,LOC107586504,LOC107590002,LOC107707146 coding upstream 49796 21899556 ~ 21905109 (+)
LOC113542474 zfp36l2 coding upstream 218372 21733757 ~ 21736533 (+)
thada thada,LOC104958480 coding upstream 223041 21645736 ~ 21731864 (+)
epcam NA coding upstream 345763 21606385 ~ 21609142 (+)
LOC113537563 LOC108263692,LOC108422693 coding downstream 7342 21967741 ~ 21970960 (+)
prph2b LOC108262942,LOC108422795,LOC103028857,LOC107578331,LOC107739477,LOC107586467,LOC107590000 coding downstream 283710 22244109 ~ 22265419 (+)
timm23b timm23a,LOC108263229,LOC107565600,LOC107690962,LOC108426535,LOC107561858 coding downstream 610972 22571371 ~ 22587644 (+)
yipf3 yipf3,LOC107696384 coding downstream 641157 22601556 ~ 22608030 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838 coding downstream 648080 22608479 ~ 22621693 (+)
G50783 NA non-coding upstream 79890 21874813 ~ 21875015 (+)
G50772 NA non-coding upstream 85877 21868824 ~ 21869028 (+)
G50516 NA non-coding upstream 380852 21567415 ~ 21574053 (+)
LOC117596875 NA non-coding upstream 428838 21525437 ~ 21526067 (+)
G50528 NA non-coding upstream 437150 21516282 ~ 21517755 (+)
LOC113545609 NA non-coding downstream 44319 22004718 ~ 22015489 (+)
G50880 eml4 non-coding downstream 75083 22035482 ~ 22041152 (+)
LOC113544795 NA non-coding downstream 267046 22227445 ~ 22229448 (+)
G50936 NA non-coding downstream 291436 22251835 ~ 22252048 (+)
G50929 NA non-coding downstream 306298 22266697 ~ 22337044 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 835941 21025733 ~ 21118964 (+)
G49862 NA other upstream 1379426 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 1562304 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 2598807 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 2692817 19256064 ~ 19262088 (+)
wu:fj16a03 NA other downstream 59923 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 524911 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 823929 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 950745 22911144 ~ 22913552 (+)
G51562 NA other downstream 1494029 23454428 ~ 23455549 (+)

Expression


Co-expression Network