XLOC_005320 (rhbdf1b)


Basic Information

Item Value
gene id XLOC_005320
gene name rhbdf1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20227395 ~ 20303438 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010212
GAAAAAGTGCAGACTGAAACTCGCTGCTCTGTGCTGGGCTCCACAGAGTCGGAATTCACGCGACAAGAAGCATGCTTTTCTATTTGCAGCGTTGTCGCGAATCTTGGATTTAAGACCTGACTATGTAAGAAAAGCCCTAACGCTTTGGTACTGTTCAGTTATGCTCTGACAATATATTTCCTCTGCCTGCAAAGAAGGTGCATCACACTATACGCCTGTTCATGAACAAACACAGTCGCTGAGATCTGAGAGTCCATCAGAAGCTGGCTGGTAAGGGGAGGGGCGGCAGACATGGCCGATGCTGAGGATGAGAGCAGGAATGACAGCCTGCAGAGAAAGAAGCCGCCCTGGCTCAGACTGGACATCCCCACTGTGGAGGAACACAATCACTTCCTTCAGCCTGTCATGCGTAACAGTTTGTACCTGCGGAGTGCCAGTGTGCCCACTGAAAATATTCAGCTCAGATGCCCGCCAGTTGACATCAACGGCTGTCGCAGACCCTCAGTCCTGCGCAAACCCTCCATCTCACAGACCATCAAGAGGGGCACAGCAGACTGGTTTGGGGTCAGCAATGATTTGGATGCCACCCAGAAATGGCAGCGGAAGAGTTTGCGTCACTGCACCCAGCGCTACGGCAAACTAAAGCCTCAGGTGATCCGAGAGATGGACCTGCCCAGCCAAGACAATCTCTCCATGACCAGCACCGAAACCCCTCCTCCTCTATATGTCCCACCGCCACATCATGGCATGCAGAGGATCGTAGACCCGCTGGCTCGAGGTCGAGCGTTCCGTAATGTGGATGAGGTGGATGGTGTGAATGTACCTCAGACCCCCATCACCCCCTGCGCCGCTTCCCTGTGCTCCTTCACCAGCTCCCGCTCCGGCTTCAACCGGCCTCCCCGCAGACGCAAGCGTGAGTCTGTCGCCAAGATGGGCTTCAGAGCTGCTGCTGCTCTGGTCAAGGGTCGTTCTCTGCGGGACGGGGCTGTTCGCCGATTGCCGAGGCGCAGTTTTGCCGCTGCTAGTTTCCTGGATGAGGACACAGTGGATTTCCCTGATGAACTGGACACCTCTTTCTTCGCCAAGGATGGGGTTACCCATGAAGAGCTGTCCACATACGCAGACGAGGTGTTTGAATCACCTTCTGAAGCTGCCATTAAAGAAACAGATGCCAGTCGAGCGGGAGATGAGCGGGACCTGACGGGGAGTGCCCTGGAGAAGACCGAGCTGGAGCGGAGCCATCTGATGCTGCCTCTGGAGAGGGGTTGGCGTAAAGCAAAGGATGGTGCTCTGGTTCAGCCTAAAGTGCGCTTACGGCAAGAGGTGGTGAGTGTGACTGGGCAGCGGCGTGGTCAGCGCATTACTGTGCCTGTTAAAAAACTCTTTGCTAAGGAAAAACGTCCTTATGGGCTTGGCATGGTGGGGAAACTGACCAACCGCACCTATCGCAAACGCATTGACAGCTATGTGAAGAAACAGATCGAAGACATGAACGACCACAGGCCTTTCTTCACATATTGGATCACCTTTGTTCATTTGTTGATTACCGTCTTGGCGGTTTCCATCTATGGCATTGCACCAGTGGGCTTTTCACAACATGAGACTGTTGATTCTGTCTTACGAAACAAAGGAGTTTATGAGAATGTCAGATTCATGCAGCAAGAGAACTTCTGGGTTGGGCCAAGCTCGGAGGCGCTGATTCACTTGGGGGCGAAGTTTTCCCCCTGTATGCGACAGGATGAAGAGGTTCACCAGCTCATCCAGCAGAAAAAGGCCAGCGAAAAACACTCGGCCTGCTGCGTCCGCAATGACCAGTCCGGCTGCGTTCAGACCTCTCAGGAGGAGTGTTCAAGCACTCTGGCATTATGGGTAAAGTGGCCTCAGCACCCAAGTGCTCCAGTTCTAGGGGATAAAGTGCGTCAGTACGGCTCCGTGTGCCATCAAGACCCCAGGATTTGTCTGGAGCCTGCCTCTGTTTCTCCTCATGTGTGGCCTGATGACATCAgcaagtggccgATATGCACCAGGTACAGCACAGGGAATCACACTAACCTGCCTCACATCGACTGCGTCATCACTGGTCGACCCTGCTGCATCGGAACGAAAGGAAGGTGTGAGATTACATCGAGAGAGTACTGTGACTTCATGAAGGGATACTTCCATGAGGAGGCCACGCTCTGTTCACAGGTTCATTGCATGGATGATGTTTGTGGCCTCCTGCCTTTTCTGAACCCAGAGATCCCAGACCAGTTCTATCGACTCTGGCTATCTCTGTTTCTTCACGCCGGGATCCTGCACTGCCTGGTGTCTGTGTGCTTCCAGATGACCATTCTAAGGGATTTGGAGAAGCTGGCAGGCTGGCTGAGAATCTCTATCATCTATATCCTCAGCGGGATTACGGGCAACCTCGCCAGTGCCATCTTCTTACCGTACAGAGCAGAGGTGGGTCCGGCTGGCTCTCAGTTTGGCATCTTGGCCTGTCTGTTCGTGGAGCTGTTCCAGAGCTGGCAGATCTTGGCACGGCCGTGGAGGGCCTTCACCAAGCTCTCATGTGTAGTGCTGTTCCTTTTCGCCTTTGGCCTGCTGCCCTGGATAGATAATTTCGCTCACATCTGTGGCTTCGTCTCGGGCTTCTTCCTGTCCTTCGCCTTCCTGCCCTACATCAGCTTCGGCCGCATGGACATGTACCGCAAACGTCTACAGATCCTCGTGGCACTTACCCTTTTTGTGGGCATCTTCTCCAGCTTCGTGGTACTCTTCTATGTTTATCCAGTTAAATGCGAGTGGTGTGAGTTTCTCACCTGCATCCCGCTGACGGACAAGTTTTGTGAGAAATACGACCTCAATGCTCACCTCCACTGAGGCCTTGCAGAAATAGGGCTGCGCTTGAAGGCATC

Function

symbol description
rhbdf1b Predicted to enable serine-type endopeptidase activity. Predicted to be involved in regulation of epidermal growth factor receptor signaling pathway and regulation of protein secretion. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human RHBDF1 (rhomboid 5 homolog 1).

GO:

id name namespace
GO:0050708 regulation of protein secretion biological_process
GO:0042058 regulation of epidermal growth factor receptor signaling pathway biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130531-6 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in regulation of epidermal growth factor receptor signaling pathway and regulation of protein secretion. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human RHBDF1 (rhomboid 5 homolog 1).

Ensembl:

ensembl_id ENSDARG00000017367

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010212 True 2897 mRNA 0.54 18 20227395 20303438

Neighbor

gene id symbol gene type direction distance location
XLOC_005319 CR352324.1 coding downstream 38109 20189169 ~ 20189286 (-)
XLOC_005318 NA coding downstream 106684 20056971 ~ 20120711 (-)
XLOC_005317 shisa9a coding downstream 361810 19792281 ~ 19865585 (-)
XLOC_005316 maff coding downstream 880717 19340786 ~ 19346678 (-)
XLOC_005315 si:ch211-141o9.10 coding downstream 945275 19272963 ~ 19282120 (-)
XLOC_005321 NA coding upstream 11557 20314995 ~ 20334709 (-)
XLOC_005322 hbbe3 coding upstream 35975 20339413 ~ 20340543 (-)
XLOC_005323 hbbe2 coding upstream 46427 20349865 ~ 20350629 (-)
XLOC_005324 aqp8a.2 coding upstream 51253 20354691 ~ 20362061 (-)
XLOC_005325 aqp8a.1 coding upstream 62671 20366109 ~ 20373058 (-)
XLOC_005303 AL772266.1 non-coding downstream 1488866 18738413 ~ 18738529 (-)
XLOC_005298 NA non-coding downstream 1772988 18453207 ~ 18454407 (-)
XLOC_005295 NA non-coding downstream 1999665 18224534 ~ 18227730 (-)
XLOC_005327 SLC16A6 non-coding upstream 272202 20575640 ~ 20584439 (-)
XLOC_005332 CR753823.1 non-coding upstream 1266345 21569783 ~ 21569899 (-)
XLOC_005335 NA non-coding upstream 1860592 22164030 ~ 22220870 (-)
XLOC_005337 NA non-coding upstream 1967062 22270500 ~ 22280703 (-)

Expression


Co-expression Network