zgc:171482 (zgc:171482,zmat4,LOC108262817,LOC108443470,LOC107747266,LOC107665614,LOC107702738)


Basic Information

Item Value
gene id zgc:171482
gene name zgc:171482,zmat4,LOC108262817,LOC108443470,LOC107747266,LOC107665614,LOC107702738
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16518978 ~ 16589676 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933003.2
GGGGTGTTGATGTAGGCAGCGAATCCCACCGCGCGCGTGGTGTCTCCCCGTACGCACGCGCACAGCGCTCGTTATTGAACTTGGCCGCTCGCTCGCGCTCAGTCGATGACATCGGCTGCGCGTCACTGAAGGCTGTTGCTCGCGCGAAGTGGACCAAGAGGATCTGATGAAGGTGAGGCGCAGTCTGTCTGCTCGCTTACCGTTTACGTGCGCGGCACCTTCTCTCGACTCGTGGCGGCTTGACGGCGAGGCACAGCAGCGAGCGACACCATGCCGTAGAGCTGCAGACGAACTCAAAGTTTGCCGCGCAATCAGGCGGATGAGTACAGCTGCGAATCTGAGGCGCTTTATTCAGGAAACAACAGCGTAGAGGAAGATGAAATCTGCAGGAGTTGGCGATGGAGGACTCTTCACAGAGAGCTACTGTAACATCTGCAATGCTCAGCTCATCTCTGAGTCACAGCGTGTTGCGCACTATGAGAGCAAGAAACATGCCAACAAAGTGCGACTGTTCTACATGCTCCACCCAGAAGATGGTGGTCCTCCTTCTAAAAGACTGAGACCAGACAACCCGGACAGCGCAGAGAATGAGGTGGACAGGAACAAATGCTGCACGCTCTGCAATATGTTCTTCACATCTGCCATTGTGGCTCAGTCGCACTACCAGGGTAAAACACATGCTAAGAGAGTACGCCTTGTTCTGGGAGAGCAGCCCAGCTTACCTACCCCCACAGATTCAACTGCAAGCACCCCTCAGGCCACAGACCCACCACCACCTTCACCTTCATGGCCCTCCATGGGCAACAATGGAGAAGCAGGCAAGTACTGCTGCCTGTGTGGTGCCTGGTTCAACAATCCACTGATGGCACAGCAACATTATGAAGGCAAGAAGCACAAAAGAAATGCAGCAAGGGCACGGCTCCTGGAGCAGCTAGCAGGCAGTCTGGATGCCACCGAGAGCACAGGCCTGCGCAGCAGTTACTCGTGCAGCATATGTAATGTGGTTCTGAACTCCATTGAGCAGTACTATGCACACCTCCAGGGctcaaaacaccaaaacaaTCTTAAACAACAACATCAGCAATGAAAGTTATTGCTGGACATATTGAAGGCATTGCTGCTGAAGCTCtgaagaaaacaggaaatggaTGTACTTGCAAACATTTGTGGAGATGCGCAGACATTAAAGGGACACCTCAGACAATACCTCTATCTGTCACTGAGTTTCTTAATACCTTAGAGGCTCCTGGACTGTTTTGTGCTTCATGTTTGTATTCTAGGTCAGTGTAAACTCGACTGTCATGAGCTGGGAATAAACACTGTTATCCTGTAGGACTAATGTATGAACTTCATGTCAAATTGATGTCAATCTGTGTTACAGTGGTTCTGATAATCACAATGGCACTAATCGTGTACAAGCACTAGCCTGAAAAGACAGGGTCACTGAGTATTTTCTTACATTCACAAAGTCTATATAATTAATACAAGTATGTAATTATCTATGATTACTGTCTTTTCCTTAAAATCTGCAGTCACTGCTTTGGTGAGCTGTTTAGGCatttggaaatggaaaaaagcaCAAAGAACAGGAGGTTGGACATTTAATGAATGCATTTTCTTAGGCAGTTGTcttgcttgtgtttaaatgtttctaGTAATGGTCAGTGATAAAGCAAATAGACTGCTTGTGTGGGAAATTTTAGTACAGAAGTGGACATAGACAAGATTCACACACAGATCACATAATTTTCTAGTTAACAAAGCTATTTAGTATAAACCATATTCACTATGAAGAAAACATTCCTACAGTTCTCTGCAAAGTAGTACTGCAGAGAGTGGATTTAGAGCTACTGAGTGTATGAAGCTATGCCTTACTTCCTGACCCAACAGATTCATCATTAGCAATGCAAGTATTTTCCTTCCCATTAGTGGTTAAGAGGAAGCTTGATAAGTGAGTAATGCTATGTCAATATTTTGaattcacatttacacagtttactACTGAGTTGTTGATGGCATTGAGCTTTGTGTACTTTTAATGATGTCAAAAGGACTGCCTTTAGTGAACAGAAATTTGCaatgttttcttcttcagaAAAGGTACaattttatgactttattcaGGTGGCGGATAGTTTATGCAATCAAATTATTAACCACCACAATGGTTCTGTTTTAAATTGGTTTAATTATgcaaaaaactgtaaataaatagtatcaggaaaaaaa

Function

symbol description
zgc:171482 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZMAT4 (zinc finger matrin-type 4).
zmat4 Enables identical protein binding activity. Predicted to be located in nucleus.

NR:

description
zinc finger matrin-type protein 4 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933003.2 True 2229 mRNA 0.45 7 16518978 16589676

Neighbor

gene id symbol gene type direction distance location
pgam1a pgam1,LOC108443463,LOC103038634,LOC107548630,LOC107668811,LOC107673951 coding downstream 56891 16459230 ~ 16462087 (-)
rrp12 rrp12,LOC106529656,LOC103399548,LOC104948777 coding downstream 76932 16424145 ~ 16442046 (-)
prdm8 znf488 coding downstream 120913 16393083 ~ 16398065 (-)
mapk8a mapk8a,LOC108263675,LOC108443371,LOC107707207,LOC107673914 coding downstream 198163 16309429 ~ 16320815 (-)
wdfy4 wdfy4 coding downstream 251093 16222366 ~ 16267885 (-)
sfrp5 sfrp5,LOC107747303,LOC107665568,LOC107728441,LOC107601040 coding upstream 50093 16639769 ~ 16651375 (-)
crtac1b crtac1,crtac1b,LOC108443504,LOC107702729 coding upstream 113050 16702726 ~ 16724661 (-)
loxl4 loxl4,LOC107665580,LOC107601038,LOC107719235,LOC107702733,LOC102214438 coding upstream 149048 16738724 ~ 16759286 (-)
zgc:123010 zgc:123010,LOC108263560,LOC108443537 coding upstream 177906 16767582 ~ 16786188 (-)
pyroxd2 pyroxd2,LOC107586065,LOC107747264,LOC107702741,LOC107601051,LOC107665597 coding upstream 200003 16789679 ~ 16799632 (-)
G47359 NA non-coding downstream 246447 16271270 ~ 16272531 (-)
G47213 NA non-coding downstream 505634 16011570 ~ 16013344 (-)
G47160 NA non-coding downstream 772204 15744540 ~ 15746774 (-)
G47158 NA non-coding downstream 784899 15733833 ~ 15734079 (-)
G47130 NA non-coding downstream 821564 15697078 ~ 15697414 (-)
G47599 NA non-coding upstream 86374 16676050 ~ 16691599 (-)
G47731 NA non-coding upstream 176033 16765709 ~ 16767510 (-)
G47735 NA non-coding upstream 198843 16788519 ~ 16788729 (-)
G47882 NA non-coding upstream 419164 17008840 ~ 17009049 (-)
G47940 NA non-coding upstream 500706 17090382 ~ 17090583 (-)
zdhhc16a LOC108263271,LOC108443446 other downstream 62723 16444696 ~ 16456255 (-)
c3h10orf53 NA other downstream 1102495 15412913 ~ 15416483 (-)
sdhaf4 sdhaf4 other downstream 1734225 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 2326735 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 3083492 13429997 ~ 13435486 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 389455 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 881511 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 971728 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 988502 17578178 ~ 17661419 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other upstream 1740692 18330368 ~ 18613521 (-)

Expression


Co-expression Network