si:dkey-191g9.5 (LOC108263627,LOC108438182,LOC106606775,LOC107565930,LOC107666514,LOC107713893,LOC107743575)


Basic Information

Item Value
gene id si:dkey-191g9.5
gene name LOC108263627,LOC108438182,LOC106606775,LOC107565930,LOC107666514,LOC107713893,LOC107743575
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10528377 ~ 10540040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933156.2
GGATTGTtaaagagtgggagagagagtgcCTGTGTGTGGAAGAGGGATGGTGAATAAAAAATGGTATAAAAGCATGGAAAGGGGGAGAGATTAAAGGCATAGAGCGTGCGATGTGATGTAAGAATGCGCATTTATTCATCAATGGAATGGACCAGTAAGAGTGTCCAAAGCCAGGTGCTGACTCAAGACGCTCTCAAGGCTGGAGACTGCTGTCCTGCCTGAAGGAGGGGTGCCTCTGtcgtcacacacacaaacacgcacaatCCACACGGAGCTGCGGCTAGAGGCAGGGGTAGAGACAGGGAGACACCAAGGAACACCCAGACTACCATACACCATGGCAGATATTGATGCTCTGACTGGAGCTCTGAATGCCATCAGTGTGAGCACTGAACTTGTAGAGGAGGAACTAAAGCCTCATATTGACACGCTACTGAACGCCTTACTGGAGAAGAAAACGGGTGCTGCAGAGCAGATAGCCTCCAGTGGAATACTGCCCACGCTGGCCCAGACTCTGAGACAGAAGGGCTCCCTCAGATCACAAGTGACGCTGTTGGTGGCTGAAATGGCCAGAGAAGCTGCTGTAAGGGAGCGGTGTATCCAGGCAGGCCTGGTGGCTGCTCTGGTGCCTTTACTGAACAGCCCAGACCAGGAGCTGCTGCTGCACACCGGCCGTGCCATCGGACGCATCTGCTTCGACAACACTGTGCAACAGACACAGTTGGTGAAGAATGGTGTTATCCCCAGACTGGTGGCCATTATGCACCAGTACCCAGAGAATGATCCATTAGTCAATGTCTGCCTACTGGCCCTGTGTAACCTTGCTGATATGGATGCAGCGAGAGAAGCTTTGGCAGAAGTCGGGCTGGCAGATGTTCTGACCTCCCAGCTGAAGCGTGCACCAGATGCAGAGCGCCGCCATCTTATTCTGGAGGTGTTGGGATCACTGGGAGAGAGTGATGCACTGAAGCTCCAGTTTGTAGAGGGTGGGGTGCCTGAAGCCCTCTCTGAAATGATTCGAGGATTGCAGGGTGACTCCGACCCTCATGACCTGTGTAGTATAAAAATAGCGTCCAACCTCATAGTGACATTGCTACTGGGAGATGAATCCATGCAGAAATGTTTTGGAGAGGGAACAGGGGGTGTGTATCAGGATGTTTTGTCCTGGCTTCAGTCCTCTAACATCCAGCTTCAACTGTCTGGTGCACTGGCAATTGCCAACTTTGCCAGGAATGACAGTAATTGTGTCAAGATGATGGAACTGGGGGTTGTTCCATATATTCTGGATCTGCTGGAGCATCATGTAGATGAGGGAGATGTGTCAGTGCAGCATGCAGGCCTTAGTGCTCTCAGAAATCTTGCTATACCAGCATCTAATAAAGTGCGCATGCTGGAGGATGGAGTGATTCAGCGGATCAGGACTCTGCTGCGCTCCGACATGCCTCCTGTCCAGTTCAAGCTCCTGGGGACTCTGCGTATGATGGTGGACGGCCAAGatgaagCAGCTACAGTTTTGGGCAAGGATGAGATGTTATTGGCACGGGTTATGGAGTGGTGTGAAGCAAAAGACCATGCTGGTGTCAGAGGGGAGGCCAATCGGCTTTTAGCAGCACTTATCAGACACAGTCGCTCCTCAGAAGTCATCCGTGCTGTCATCAAGGCAGATGGGGTCCAACACCTGATCTCTATGGCAACCAGTGAACATGTCATTATGCAGAATGAGGCGTTGGTTGCTCTAGCCATCGCCTCTGCAATAGATATTGATGTGGTGGAAGAACCGTTCAGTCATGCTAATCTGCTATCCACCCTGAAGAAGATGCTGGATGACCCTGTAGGCGCAGTGGAAGTCAAATTTAGCACATTAGGGCTCATTTGCAGTCTGGCCAACTCCAgcatgCTGAAGGAACAGATGGATGCTCTGAACCTGAAGGACAGCCTGTCCAAGCTTTCCAGTCACACCAGCACCAAGCTGGCCTCGCAGGCAGTCACAGTAATGGGCGTACTCTCTGAGACTAGCTAGAGCACCTGTCAAAACTCTCTGATTGATGGGACTGCTGACTAGAAGCACACTGCGTGTCCACTTCATACACATCTCATCAACCCAGTCCTGTATTCTGTGAGACTGAAGCAATCTGAAGCAATCTGTCTGTGAGCTCAGTAGGAAGCGGGGCGATGCCATTCTGGCAGAGGAGCTTAATTGGCTCATAAATAAAGTATCATTCTATGGTTCATTTCCTATTAGCTGACCTGTGATAACCTTGAGGATATATAGTACAGTTAGAACTTACCGTCTCCTGTATAAAAGCACAGTTCTCTCTAAAGTCCATTTCATTATCTGAACTCTCTGAAGAGGAAATTAGCAATCTAAAAATAAGAGATGCtctaatataaatacatatagaATCATAGTGTTCTGCCCAATTATATGAGCCTTAGATTTAGTACAGGCTAATTTGCTCTGACTGGTAATTAGTGATTGCCTAGGAAATGGaatatgtttcattttgttcGAGCGGGTGctaattttgtgtaaatataacaCTCTGTCAGTCCTACACTACATTAACCATACTCTTCATTAAGAGAAGCACATGGACTTACTTATTCCTACATTTACATAATGTGGAATGTGATTATAGTTCTTGCCTGAGAAAAGGATTTCAATTTGCAATAATTATTTAGTcgttatattataattataacataGCTGGTTGTATTAGTATTAATAGAGggttttttaaaatgcaaatactTTGATCATGTTGATCATTCTATTAGCTAACCATGAATACAAGGAAAGTCCATGTACGTATTAGCAATACCAAGAAATATATCAAGAGCTGTGTTTGAGATTCTCTAATATCAAAATAGCAAATGCGCAATCATTGATGTGTTTTTAAGTGTGACTGTGCTGTGGGTTAATACAAATCTCTGCACTGTATATGTGTCTAACTGTGTCACTAATGCATTCTTAattcttcacaaaaaaaaaatcacagctggGAAGAAGTAAATTTACAATTGCTATTCTAGGCAGATGATGAGTGGAGAAGAACTCGCTGATAAAACAGGATCAGCTGAAGGCTATGAATCTCAGGGACTGTGATTAGGAAAGCTTTTGTGTGACACATCTTCCCCCACTGCATCACCCACCCTCTCAACAGCAATTCATTACAGTCAATTTGTCAAGTTCCTCACCGCTAGATAACGTAAATTGCACAATCTCTGTCCGTCGTTGATACTGCCACTGTAGCCTGTTGAGAAGACTTGTAAATGGACTGTTTCTGGTGTTGAAAAGTGCACCAGAAGAGCTTGTGTCTGGCAATAAAAGTGAAACAGCTGAACTGGCATGCTGCTTTTCTTTAAGCAAAACACAAGCCTGTTAAGAGTATAGAGAGAATAGAAAGCTTCACAGGTTTAGGCAGTGGTGTAGAAaagtattgtgatatatatatatatcacacaatacttttctacatttctacaatacatgaTGTATATAACGATATATGAagggtggtgcagcaggtaacGTTTCCACGTCACAACTGGAACAAGCCTTAGCTCAGCTCCTCTTCTTGTGTCTGagtaggtttcctccaggttctccagtttcttcccacctctcaaaaacaagccagtaggtggattagctatgataaattgccactaggtgtgaTTAtgcgtgtgcatggtgccctgtggaCTGAGGTTCCATCCAGGCtgtatttctgcctcatgtccagtgttcctgggataggctccagacccactgaccagaataaagcaattactgaagatgaatgaatgaatgaaatgagtaAGATGTGAAATTTCTCATGACTTTAAACCTGGTGGTAGTTGaactctaaaataaataaggtgtgtttgaaa

Function

NR:

description
PREDICTED: rap1 GTPase-GDP dissociation stimulator 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933156.2 True 3894 mRNA 0.45 14 10528377 10540040

Neighbor

gene id symbol gene type direction distance location
mmrn2a NA coding upstream 492987 10016483 ~ 10035390 (+)
glud1a glud1,glud1a,LOC107563055,LOC107743560,LOC108438199,LOC103026661,LOC107725450,LOC107601820 coding upstream 533987 9976131 ~ 9994390 (+)
psda LOC108263482,LOC108438200 coding upstream 584389 9909353 ~ 9943988 (+)
LOC117596887 NA coding upstream 621984 9904065 ~ 9906393 (+)
rufy2 rufy2,LOC107725492,LOC106612408 coding upstream 631583 9876707 ~ 9896794 (+)
si:dkey-191g9.7 LOC108263628 coding downstream 2570 10542610 ~ 10550191 (+)
dna2 dna2,LOC107743557,LOC108261390 coding downstream 33112 10573152 ~ 10588115 (+)
LOC113542239 rmdn2,LOC107747293,LOC107665610 coding downstream 144460 10684500 ~ 10723757 (+)
nanp nanp coding downstream 243066 10783106 ~ 10785648 (+)
LOC113538283 abhd12 coding downstream 262127 10802167 ~ 10816200 (+)
G44016 NA non-coding upstream 11491 10514337 ~ 10516886 (+)
LOC117596582 NA non-coding upstream 205113 10318421 ~ 10323264 (+)
G43905 synpo2l non-coding upstream 281342 10242057 ~ 10247035 (+)
LOC117596896 NA non-coding upstream 364421 10161499 ~ 10163956 (+)
G43663 NA non-coding upstream 426846 10093735 ~ 10101531 (+)
G44044 NA non-coding downstream 18589 10558629 ~ 10560523 (+)
G44059 opn3,LOC106939390,LOC107676370,LOC106911851,LOC103148276,LOC107549142,LOC107665579 non-coding downstream 71439 10611479 ~ 10611806 (+)
G44060 opn3 non-coding downstream 75106 10615146 ~ 10615586 (+)
G44182 NA non-coding downstream 434802 10974842 ~ 10978237 (+)
G44211 NA non-coding downstream 463120 11003160 ~ 11004990 (+)
trnak-cuu NA other upstream 2058496 8469624 ~ 8469881 (+)
G42685 NA other upstream 2062065 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 2856967 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 2898237 7620545 ~ 7630140 (+)
G42075 NA other upstream 3307354 7203950 ~ 7221023 (+)
sprn sprn other downstream 12219 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 54534 10594574 ~ 10608704 (+)
dntt dntt other downstream 559553 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 1142824 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 1166895 11706935 ~ 11707005 (+)

Expression


Co-expression Network