hcar1-3


Basic Information

Item Value
gene id hcar1-3
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21914549 ~ 21917668 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933215.2
AGCAGTTTCCTTTCTGTACTCAGTCTGCGAGAACTGATTAAGACTCTCTCTAATCAGTCCTGAAGCTGTGCTCCAAAAGAGGAAGCTCAATTCCCACTTACAGGGTTATAAAGACAGTATCAGAGTCAGCTTTTGAAATTTCATTAATACCATGCAGTCCAATAACAATACTACTTGTGATGCGGAAACACAAAACGTGGTGACCTCCATTCTCCCTCCTTTACTtatcactgagctcctgcttGGCCTGCCAGGAAACGTGATAGCACTGTACATCTTCTGTCGCCACCTTCCATCTTGGAGACCCAATATTGTGTTTCTCTTCAACCTGATCCTGGCTGATTTTCTCCTCTTGGTGAGCATGCCATTTCGGATTGATACCTATCTACGCTCTGAAAACTGGGTGTTCGGTGATGCTTGGTGTCGACTCAACCTCTTCATGCTTGCAGTCAATCGATCAGCAAGCATCAGCTTCATGACTGCTGTGGCTGTGCATCGATATTTTAAAGTAGTCCACCCACATAATAAAATCAACTATATTAACTTACACCAAGCTGGAGGGATCGCTTGTTTCATCTGGGTGGTGGTGATCTCAATGCGGCTTCCTCTGTTGACTAACAATCTTCTTATAGAGTCGGGGAATGCTTCTTATTGTCGGAGCTTTAGCAACAAAGAGATCTCGTTTGGTATTAAGCTACACTATGTGATATACATTGTTGAGTTTTTCCTCCCTCTATTGCTACTGCTCTTCTGCTCCATTCGAATTTCCTGCATATTAAAACAACggcagatggacagagagaagaaggTGCGACAGGCAATTCGCACTGTCCTAGTAATTGTTGGGGTCTTCATCTTCTGTTTCCTCCCTGGAGTTGCCACAGGACTGACTGCACTCTATATGAAAACACGGTTGAAGGAATACTGTAATGCTTACAAATTAGTCAGTCAGCTGTTTGTCTTGTCCATCGGGTTCACATACATGAACAGTGCCTTGGATCCTGTCATCTACTGCTTCTCCAGCTCCATGTTCCGAAACACAGTAAAAAGGGCTATCAATCAAACTGGACTAGGGCAATTACAGCTAAGCCGCCGTGCCAGCACAGTGATTGGAAGTGATTCCTAAGCAGGTGCCATCAGATTTGAACTGatattgtattatttgttaATCATGCCTTTCATCAGCTAAGACTTCTGTTAATGCATCTGTACTGTGACCATTCAAATATCTGGCaacttttacaaaaaatattgccAGGTATTTAAAAGCTCACAGCAATTTACCTTCCATAAGAGTAGTGTAATAGTCAGCTATATGGAaatgtttcaggtttttttatGCTGAATTTTAATTCAATTGTATGATGTAAACGGAATAATTGTAACATGTCGGGTAAGATAAAGTTGAAATGTCTTGCATTTGTAGTGAGCAATATGGTTAAATAATATGGCTAGCTTAGACATAGCATGTCCacatagtaatagtaatatagACAACAAATATTCAGACCTAATATATTGGACATATGTTTAGCAACCATTTTCCAAAATGAAGAAATCCCCTGACATTCCCAAAGCATATGACCTAATATCCCATCAAACTCACGAGAACAAAACACTTAGTGTGGCTCATCTAAATGGTAGACATTTCTAGACTAGAGGAGAGTTATCCCAAGTGATAAAACTTAGtatgattttaatattaatgcatatgtatttgtataaaaatatataaacactaagAATAACAAAATTATGAACAAGATTTGATTATGAACAGAGTTTTGGTAATTCTTTCATCTTCTTCAATGGCAGAGATCAGActgatattaaattattaaggCAGTTGTACTTAAGGAAAAATTTTCTGAAGCTTTTCCAAAAACCAGGGGGAGAAAAAAGTGGTATGTTAGTATCaataagtaatataaatatatgtttatttttagaagaatattaatattttaatattaatgttaatatatacagtggatatatacCAGAACTGCAACAAAACGAATCAAAAAAAGGAGTCCATCTCTGTAAATCAAAATAGGCAGGATTCAGTAACACAATTTTAGTAACACAtaacacagttttatttaatgatgaTAAATGTTGGTATTCAGATATCTGAAATTCTTACTAACTGATATCTCATAAGGAAGTACAACATTTTCAGCAAAATTGTTAATTAGAATAATGGATATTTTGCGAAGAGAAGCTATGAATTCTGGCAACTAGCAACATATAGAGGAAGTGCCTGCAAGCTCAACTGTATCTGTATATAGTTTATCagcttttactttattattacttatgtaGCTGATAAGTTCTGGTTacttatattttgttatatctTATTCCATAACCACCGAAATGCAAAGAGACATTGTAAGTAAATCATAGTattctaaaacattaaacaattcACAAGTAATTTCATTTTTCCAGTTCTATTTTGTTTTCATCCATCATTATTTTCAATCATAAGTGTTTGTGTCCGactgtctcttttctctgtatCTTGAAGTAAACTGCTCAGCAATAATCAGC

Function

NR:

description
hydroxycarboxylic acid receptor 2-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933215.2 True 2556 mRNA 0.36 2 21914549 21917668

Neighbor

gene id symbol gene type direction distance location
haao haao,LOC107727361,LOC107699283,LOC107586504,LOC107590002,LOC107707146 coding upstream 9440 21899556 ~ 21905109 (+)
LOC113542474 zfp36l2 coding upstream 178016 21733757 ~ 21736533 (+)
thada thada,LOC104958480 coding upstream 182685 21645736 ~ 21731864 (+)
epcam NA coding upstream 305407 21606385 ~ 21609142 (+)
ttc7a ttc7a,LOC107586483,LOC107699274 coding upstream 354450 21531271 ~ 21560099 (+)
LOC113537982 kcng3,LOC107758134,LOC107756869,LOC107590001,LOC107586474 coding downstream 37237 21954905 ~ 21960399 (+)
LOC113537563 LOC108263692,LOC108422693 coding downstream 50073 21967741 ~ 21970960 (+)
prph2b LOC108262942,LOC108422795,LOC103028857,LOC107578331,LOC107739477,LOC107586467,LOC107590000 coding downstream 326441 22244109 ~ 22265419 (+)
timm23b timm23a,LOC108263229,LOC107565600,LOC107690962,LOC108426535,LOC107561858 coding downstream 653703 22571371 ~ 22587644 (+)
yipf3 yipf3,LOC107696384 coding downstream 683888 22601556 ~ 22608030 (+)
G50783 NA non-coding upstream 39534 21874813 ~ 21875015 (+)
G50772 NA non-coding upstream 45521 21868824 ~ 21869028 (+)
G50516 NA non-coding upstream 340496 21567415 ~ 21574053 (+)
LOC117596875 NA non-coding upstream 388482 21525437 ~ 21526067 (+)
G50528 NA non-coding upstream 396794 21516282 ~ 21517755 (+)
LOC113545609 NA non-coding downstream 87050 22004718 ~ 22015489 (+)
G50880 eml4 non-coding downstream 117814 22035482 ~ 22041152 (+)
LOC113544795 NA non-coding downstream 309777 22227445 ~ 22229448 (+)
G50936 NA non-coding downstream 334167 22251835 ~ 22252048 (+)
G50929 NA non-coding downstream 349029 22266697 ~ 22337044 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 795585 21025733 ~ 21118964 (+)
G49862 NA other upstream 1339070 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 1521948 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 2558451 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 2652461 19256064 ~ 19262088 (+)
wu:fj16a03 NA other downstream 102654 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 567642 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 866660 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 993476 22911144 ~ 22913552 (+)
G51562 NA other downstream 1536760 23454428 ~ 23455549 (+)

Expression


Co-expression Network