tysnd1 (tysnd1)


Basic Information

Item Value
gene id tysnd1
gene name tysnd1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15774144 ~ 15777662 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933239.2
AGCGTTTCTTTGCTGGTTTCAGAAATGCTAACCTACCAGCAGCTGCGTGGTTTGTAGCAATGGCTATGCTttacataaaatgcaaaataggaTGAGTTTAAGCCATTCGAAGTCCATtactttgttgtttgtgtttatattggtGCTGTTCTTCACTCggtttgcttttttaatttgagAACGAGCATATAAGTTATTTAAAAGTAGGCTACATGTTAACTCAGGTCAGTTGAGTTAGGAATTAGGTTAATCTGCGACCTTTAAACACAGGAGCTGAATATCTCTGAAGTATCTGTATTGGAGgggattttattcatttgagaAAATGTCAGTCGAGcaaatgtgttgtgttgtcacTGTTTCTGAGAGCAGCTGTGATGAGAAGCAGCAGCCGGCTGGAAATCCACTGAGCTGCAGTGGAGTGGTGTTAAACTATCAGTCTGGACTTGTGCTCTGCAGTGGGCTGCTGCTTTCTCGTTTCCTACTAGATAAAGACTGTATAAGCCAAAACCCCAATATATTAAGTGCTCACAAATTTAgtaacaaaattcaaatttacaTAGATCATGTAGATGGAAAGGTGAACCAGTTCCCAAGCAAGAGATCCATAATGAATGGGTGTCCAACATGCCATAAACCTGCTGAGCTGCTCATGATGATCAACTGTGTGGAGTTCCAGATGGCTTTGCAAAAACTGTTTACTGACTCTGAACAGTGGAAATTTACTGATTGTGATGAGGACAATGAAATTCTCTACGACTCGAATTTCTTGAGTTGGTTTGCACTGCTGCAAATGACCCCAGATACCCAGGTTGATCCTGTGCCTTGGATAAAGAGTACAGCGCTTGCAAAGGGATGTTCTGTCCTGGCATGTGGATCTCCGTTTGGTTCTTTCTGTCCTGATCTGTTCATGAGCACACTGAGCAAAGGCATCGTGAGCAACCTGGCTGGAGAGGAGAATGCACTGATTTTGACAGATGCCCGCTGTCTGCCTGGCACTCAGGGAGGAGGTCTCTTTGTGAGTGATGGAGACATATCGTATCTTGTGGGCTTAATCACTTCACCACTGTGTTGGAAGTCCAGTGAATGGATTGGTCTGACTTTAGTGTGTTCTCTgcatttaattttgaaaaacatATTAGAGGCTGTAACCTCTTATCAGTCGCTGAGAGAGATATCAGCACACTCGTTCACTGATATCCCTCATGTCCCAGCTGATGCACACCAAAAGtcagaaaatggaaaataccccgtggtggtggtggttgaaTGTGGAGAAGTTTGGGGTTCTGGAATTGTTATAAATCCCCATTTAGTGTTAACTTGCAGACATGTTGTGAATGGGAGACAATTTGTTAAAGTCACAATCAGCACTAGTCAAAGACCTCAGACTGTGAGTAGCAGAGTGCTGTATTCTACAAAGCAATCTTCTCCTTATGATATTGCTGTTGTGCAGCTTCAGGAGCCTTTCTCACATGTCCTGGTGCCACAGTTAACCACCAGTTTTTTGCCTGGTGAGGATGTGCTTGTGCTGGGTTATGGAGCTTTAGGGAAAACCTGTGGCCCCTCACTGACTTCAGGGATACTCTCCAGGGTCGTTCACCTGCAAAACAAGCCTGTGATGCTGCAGACAACCTGTGCAGTGAATTGCGGAGCCAGTGGTGGGGCTGTTGTCCGTGCCAAAACGGGAGAGTTGTTAGGTATTGTGTCCAGTAATACAAGAGACTTTGCAGCCAAAGTTACATATCCCCATTTAAACTTCAGCATCCCAGTTTCTGTGTTGGAGCCTCTTCTGAGTCGCTTTGCACAGACACAAGACCCTGCTGTCTTTCAGGAATTGGACAGCGCAGAGGTTGAGGTTAGAAGAGTGTGGAGACTTCAGATTCCTCAAAGTAAGCTGTGAATATACGTATGTCAGATAGAAAATGTGTGATGTTACCGTGTGCATACTATTGCATTCGACATTCCCACAATGGCATTAACAAACAGACTGTTCCACTTTTAATTGCTGAACGTTCAGTGTACTGGAAgaatagaaagaaaaggaaaatggatTTTAAGGTAATTGGTTGCTGGTTATTTTGTCTTTCAGTGAACAGATCTAAAAGATTTAATTCTCTGTGGACATCAAATGTAATTACAATTGATTAGTACAAAGACTAATATAAGTAATTGTTTATacgaaaataaaaaaatctattttggtTTTATCAATTCATAAAATGAATTTTACTATATTGCAGGGTTTTGATGATacttttaaaggattttttttacttgtcaCTGAAGCTACTTTTTATTCTGTTGTTTTGCCATGTCTTGTGGCCAACCATGTGATTAGTGCTTTATTACAACTATGGCAAATTTTGAATTCTTTCTGAAAATATAACTACTTGTTCTGTGTACAGTGGGCCAACATTAAGCCAGCCATGAAATAGATGTCATTTGAAGAATTGAAAATGGGAATGCCCTTAAGTGGTGTGAATCTTCATGCATATTGTTGTCAGTATTACTTATGCTTAGGAGACTATCAAACACTCTGAAACTCAGTAAATCTGGGGAAAGGAGAGTCTGAtgagaaaacaaataaagcCTGAAGCAGTTGTTCTCAGACTGCAGACACAAATCATGgactactgctgctgctttcaCAATTTCTCCTGGCCACAGCTCATCCTATGAACTGTTCATTAACTTGACTGTAACAAAGTCTTTCACTTCTAACATGTTTCAGCTTTACATTGTAATTGTGCCTCattaaaagttaattttttttatca

Function

symbol description
tysnd1 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in protein processing and regulation of fatty acid beta-oxidation. Predicted to act upstream of or within proteolysis. Predicted to be active in peroxisome. Orthologous to human TYSND1 (trypsin like peroxisomal matrix peptidase 1).

NR:

description
peroxisomal leader peptide-processing protease

GO: NA

KEGG:

id description
K23012 TYSND1; peroxisomal leader peptide-processing protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933239.2 True 2780 mRNA 0.41 4 15774144 15777662

Neighbor

gene id symbol gene type direction distance location
LOC113544455 LOC108263660 coding downstream 41391 15731459 ~ 15732753 (-)
trmt2b trmt2b coding downstream 51266 15721281 ~ 15722878 (-)
scdb scd coding downstream 56104 15711130 ~ 15718040 (-)
wnt8b wnt8b,LOC107708332,LOC107588635,LOC107668784,LOC107716351 coding downstream 65768 15703159 ~ 15708376 (-)
hif1an hif1an,LOC107707391 coding downstream 77289 15680721 ~ 15696855 (-)
sar1ab sar1a,sar1ab,LOC104930554,LOC103355135,LOC105021427,LOC107588735,LOC107668793,LOC107708324 coding upstream 1208 15778870 ~ 15782164 (-)
ppa1b ppa1,ppa1b,LOC107668792,LOC107708308,LOC107588733 coding upstream 4937 15782599 ~ 15790106 (-)
LOC113544337 LOC108263461 coding upstream 35903 15813565 ~ 15821008 (-)
zcchc24 zcchc24,LOC107564348 coding upstream 214552 15992214 ~ 16025302 (-)
wu:fj13e08 LOC108262408 coding upstream 249474 16027136 ~ 16032780 (-)
G47160 NA non-coding downstream 27370 15744540 ~ 15746774 (-)
G47158 NA non-coding downstream 40065 15733833 ~ 15734079 (-)
G47130 NA non-coding downstream 76730 15697078 ~ 15697414 (-)
LOC117596835 NA non-coding downstream 100686 15619605 ~ 15673458 (-)
G47114 LOC101463634 non-coding downstream 174938 15596729 ~ 15599206 (-)
G47213 NA non-coding upstream 233908 16011570 ~ 16013344 (-)
G47359 NA non-coding upstream 493608 16271270 ~ 16272531 (-)
G47599 NA non-coding upstream 898388 16676050 ~ 16691599 (-)
G47731 NA non-coding upstream 988047 16765709 ~ 16767510 (-)
G47735 NA non-coding upstream 1010857 16788519 ~ 16788729 (-)
c3h10orf53 NA other downstream 357661 15412913 ~ 15416483 (-)
sdhaf4 sdhaf4 other downstream 989391 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 1581901 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 2338658 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 2742948 13005486 ~ 13031196 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 667034 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 1201469 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 1693525 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 1783742 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 1800516 17578178 ~ 17661419 (-)

Expression


Co-expression Network