gfra4a (gfra4,gfra4a,LOC107693311,LOC107568637,LOC107695017,LOC107733662)


Basic Information

Item Value
gene id gfra4a
gene name gfra4,gfra4a,LOC107693311,LOC107568637,LOC107695017,LOC107733662
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19516321 ~ 19604187 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933276.2
ATCTCACTTCAGGATACAGCCGACACGTTCCACGCTCTGGGCACCATGTCCTAATAgctgtgtgtggatgtgtgtgtgtgtgtgtgcatgtttgtaaaCCAAACTGATTCCGATTTAGTGAAATCCGGTGCGAGTCGGTGGGGCTGCACCGCTCCACATTTTTGCGCAACTATTTTCATTCATCCAGCGTCACAGCTGAAGAAAACCATGATCCGAGCTAGTTTCTGCATCTGGCGCGCGCTTTGGGTCGCTGCTCGTTCCGGACTGTTAAAGCGGCGCTGAAAACCGCTGCACTCTGTTTGTCTAACTTTGATCGCGGTGGTGACGAGCGATCACTGAAGTCTAAAACTCTCTCCTCTGTTGGACTCATGGCTCTGTGGAGAATGGACCTGATCAGACTCTGTTTGCTCCAGATGCTTGTAATAGGAGTGCCCTGGCTGGTGTTGGCGGGGCAGTGGGACTGCCTGACTGCAGGCGATTCATGCTCCAGTGATGAAGCGTGCAGTCCACGACTACGCACTCTGCGTCAGTGTGTGGCAGGCGGGGGGAGTGTGAAGCTGGGGCCAGGGGCTCGTAACCACTGCGAGAACGCTGTGACCGCTCTGCTAGCCAGTCCTCTCCACCGCTGCCAGTGTAAACGTGGCATGAAAAGGGAGAAGAACTGCCTCAGCATCTACTGGAGCCTCAAGCAGTCTGTAATACACGgATTGAACCTTGTAGAGAGTTACCCATATGAGCCTGTGGAGAGAGGGTTTGATTATGTTCGCCTGGCTTCCATCGCTGCAGAGTCCGATGCGGGTATGGCGACAGTGAATCACTGTCTGGATGCGGCTAAAGCCTGCAATGTGGATGATACATGCCAGAAGCTGCGCACAGAGTATGTGTCAGCCTGCATTGCCCCATCAGTGAGAGCGGGGTCTTGTAATCGTGCGCGCTGCAACAAAGCCCTGCGAAAGTTCTTTGACCGTGTGCCACCTGACTACACACACGAGTTGCTGTTCTGTCCGTGCTCAGACACAGCATGCTCTGAGCGGCGTCGCCAGACCATCGTCCCTGCATGCTCAtatgaggaaagagaaaaaccCAACTGCCTGGCTCAGCTCAGCACCTGCGAGGATGACCTTGTGTGCAAATCTCGTTGGGCCCAGTTCAAGCATGACTGCCAGCCCTCAGAGCTCACTGCCAGCGGCTGCCAGCAAGAGAACTATGGGGCCTGCCTCATTGCCTACACTGGTCTAATAGGAACCACTATCACTCCAAACTATGTGGATAACTCCACATCTAATGTGGGGCCGTGGTGTTCATGTGCAGCCAGTGGGAATCACAGGGAGCAGTGCTATGACTTCTTAATTAATTTCCATGAAAACATCTGTCTAAAAAACGCTATCCTCGCCTTTGGCAATGACACTGACTCCAAATCAGCAGCTAACCAGCCAGGAGCAGCCAGTCCAAGGAACAACACTCCCAATCAACGCCTAGCTACCAGCACCATAACCATTACCACCATCTCAGTTAATGTGGAGAGCCAGCAGAACATCTTCCATCCACAAATACCCACCCAGatgaacgagagagacagactaCTGAGTGACTCTACCCTCCCATTACCTGATCTGTATGACAGCAGCCCTGGATGCACTGACCTGGCAGTGACAGCTTTTCTCCCCCTCATCCTGGTGCTGGCTCTTCATTTCTAGAATCaagccagccaatcacagctcagCAGCATGGAGTTGGGTTGGGACAGTGTGTGAGGCTTTTCATCAAATCCCTCTGGTGAgaaaatagacaaataaatataagAGCACAAAAGAGAGAACCATCCAAAAAGACTGCGACCCAAGTTTCCAGCCCACAATGTGAAGtagtgatttattttatgagcaCAGTTCTATGACTGATACTTGAGACTGAACTGGAGTAAAgagagtgtaaatgtgtgtgtatgtatgtgtgtatgtctatgtataaaactttctatgaaggcctgtgtaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaagaacacacttTGAAGTGCAAAAATCTTACATAACTTTGTGGTTTATCATATAGTCCctaatcattattatttcaataCCTATTTTTTCAGATACAGTGATTTTGGTACATCTGTATTGACGAATCAGGTCAGTTCTGCAGCATGTATAAGGGACAAAGCACAGTGATGAGTGTCTCATTCGAGAGCTGTAATCATACACTAGTGTTTGTGGTGATGATGACTCTTCACAGGAAGACACTTTATCGATGGAATCGCAGGGATGTTTAAATAATATGatgtactttatttttgtaatgtgtagaaaatattcatttatcatTAGTGATATCCTCTCTTGTTAGTCATGATTTTTGTCTTCAGTGATGTCTGCAAATTACGCACCTTTGCTTTAACCTCAGACTTACTGAACTGCCATGTATTTGACCTTTTCAGTGAATTATGAGTGGAAAATcacttttcttttaaagaaatgcTCTGTAGACCACACGTGCTGGGATAAAACACAAGAGTTTACACTGAACTGCTAGTTTGTTCCATTAACCCACCCCCCATCTTCACACAAATGAAACGTTCCAACAAGCTATATGTCATGTGACTGTGATGTGTGGTAAATCTAACAGACCAGCACCAGTTACTGATCAGATAAGCACTGAGTGGAATATATTAAATGCGTGACCAAGGTGGCTATCGTGGCATGATTGGTGTTGCTAGATGtgacagaaaagcatttcacaaGTGGATCTAGTCCAGGCTTCTCATGCACAGTTGGTTTATAGAGAATTTGTGTGAAATGCAAAACAACTACGAGAGATTAGAGATCCTATGGACAAAAACATTGTGTAGATCAAAGGTGAATGGTGATAATTGTGCAAGCAAGCAGACATGCCACAGCCACAAATCAACAGTGGGGTGTGATCTCAAAATCCTCCATTTACCAGCTACAACTGTCAAAGGCCAGCAGCAAAGGGTAAGAAGGCACGTCTTGTGTCGGAATTGGAACTCTGAGGACTGGAAATTTTTTACTTGTCAAATGAATCCTTTTGCATCATGATGCACTGATGGAGGATCAGTTTGAGAACAACATGATTCCATGGAGCTTCCTGTTTAGTGTGACTAATACTTCAGGCAGGAGATggcagtgtgatgatgtggggaatgttttccttAATGTAACATTATGACGTTAATACACACTGAATACCACCTGAACAGCACAGTGTACCTCAACAATGTTGCTGAGCAACACCACCCCTTTCACGGTTGGTTACAGTTTATCCACACTCAGACGGATACTTCCAGTAGGATAACGTATCGTATAACACAGCTCATGTTGTTGCTGAATGGCTCCAGGAAAATGAGAGCAAATTGTTATTGCTTCAGTGGCCTAAACAATCCCAAGACCTCAACAGCAAGATTGAGGCGCCACACGCTACTAGGTACTTAATAATCTGGCAACACAGTGGCGTTGAGGAAGccttagaaaagaaaaaaaaagacatgcttGTTTCTTAAAGAAGGTCCACAAGAATTAGTCACACAACTAATATATATTGGATGGCATAATTTCTCTCAGCTTATGGATGTCATTATCCACTTTAACACAACggcaaaaaaaagcatttaaaacacagacacttGGCTGCATGGCCTCCCAGAGCCAGTGCCCGTGGATGTGGCAATCTAACAGCAGCCAATGGAAAATGAAGCACCGCTCAAAAAATGAAACCTTCTGTGTATTTGATATGCAGGAGCcatatttctttccttttttttccccccaatctGCTTCTTGGGACACAAAAAAGGACATGGTGTTGGCAAGTGGGCAGGGTTTgtttctaatataatataattgtaatTTCTTGAAAAATAAAGCTGCCATATGAAAATGTAA

Function

symbol description
gfra4a Predicted to enable signaling receptor activity. Predicted to be involved in nervous system development. Predicted to be located in plasma membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Orthologous to human GFRA4 (GDNF family receptor alpha 4).
gfra4 Predicted to enable glial cell-derived neurotrophic factor receptor activity. Predicted to be involved in nervous system development. Predicted to act upstream of or within negative regulation of ossification. Predicted to be located in plasma membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane.

NR:

description
PREDICTED: GDNF family receptor alpha-4

GO:      GO:0004872

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933276.2 True 3919 mRNA 0.45 8 19516321 19604187

Neighbor

gene id symbol gene type direction distance location
ap5s1 ap5s1 coding upstream 90000 19412671 ~ 19426321 (+)
cdc25b cdc25b,LOC108417292,LOC104960468 coding upstream 106230 19402932 ~ 19410091 (+)
rab11fip5a rab11fip5,LOC108263817 coding upstream 176684 19318825 ~ 19339637 (+)
mrps26 mrps26,LOC107678578 coding upstream 261967 19252850 ~ 19254354 (+)
si:dkey-33c12.3 LOC108263340 coding upstream 265899 19247018 ~ 19250422 (+)
ky LOC108263466 coding downstream 170560 19774747 ~ 19786571 (+)
LOC117596472 NA coding downstream 316968 19921155 ~ 19934237 (+)
fgfr3 fgfr3,LOC108263592 coding downstream 328868 19933055 ~ 19970306 (+)
nsd2 whsc1,LOC105909588 coding downstream 438522 20042709 ~ 20064115 (+)
fam241a c3h4orf32 coding downstream 558271 20162458 ~ 20166918 (+)
G49214 NA non-coding upstream 115438 19400651 ~ 19400883 (+)
G49157 NA non-coding upstream 221028 19295082 ~ 19295293 (+)
G49146 loxl3,LOC108263239,LOC102779520 non-coding upstream 248732 19266545 ~ 19267589 (+)
G49104 dcaf10,LOC107582526,LOC107733687,LOC107708468 non-coding upstream 312634 19202230 ~ 19203687 (+)
LOC117596836 LOC107678534,LOC108263526,LOC107570529 non-coding upstream 500747 19014191 ~ 19015574 (+)
G49316 NA non-coding downstream 10530 19614717 ~ 19617317 (+)
G49522 NA non-coding downstream 308634 19912821 ~ 19954595 (+)
G49517 NA non-coding downstream 328855 19933042 ~ 19943075 (+)
G49518 NA non-coding downstream 368400 19972587 ~ 19999686 (+)
G49630 NA non-coding downstream 516861 20121048 ~ 20183193 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 160223 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 254233 19256064 ~ 19262088 (+)
grxcr1b LOC108263619 other upstream 299045 19214207 ~ 19217276 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 479677 19026968 ~ 19036644 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other upstream 604126 18902438 ~ 18912195 (+)
pprc1 LOC108263826,LOC108421584 other downstream 778159 20382346 ~ 20392601 (+)
G49862 NA other downstream 970786 20574973 ~ 20575479 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other downstream 1421546 21025733 ~ 21118964 (+)
wu:fj16a03 NA other downstream 2416135 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 2881123 22485310 ~ 22552752 (+)

Expression


Co-expression Network