gdf10a (LOC108262421)


Basic Information

Item Value
gene id gdf10a
gene name LOC108262421
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16387991 ~ 16393038 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933289.2
CATAGTGTGCAGTATAGCAGTATTGAGTGTGGTCTCAGTGCTGTCAGGTCTGTGTGCTTCTCCCTGCTTGCTGTTGGCTCCTGAGCGCGTGCGCCAGCCTCCAGTGCAGCATGCGTCCTGAGCCACGTTTTAGTGGCGCTCAGAAGAAACAAGCGCACATTCAACAGGTTCACCGAGACCCAGCAGATTCTCTCCTGACCCACTCATTCAGCACGTcatcaaaggaaaaaaacatcactacTAAAGCGGATACCTGTTTAAATGGACAATTCGTCAAGTTGGTCACCGGATGCGCAATCTAAAAACTTTTCCAAGACTTTGtagagttttttttagtttgcgCGCTGGTTCTTTGGAAGCTTGTCCATCTCGAGCGCTTGTGGTTGGTTTGCATTTGAAACCATGGCGTTTAAATGCACCGTTTTGGCGCACCTGCTCCTCTTTTCGATCATATGTGTACTTACTCATGGAGTGTCAGACTTTGTGCTGGATGTCGCACCTGATGAAGTCAGTGACAGCATGGAAACCGACAGAGTTTCACAGCATATGTTCAAACTCTACGAGAAATACACCAGAGAACCGCACTggccaaaaaacacaaatactgTGAGAAGTTTTAAAGCCAAGCCTGAAAGCTTGGAGCAAAGAGATTTGTATCACCTAAATCTAACTCTGCTTCAAGATTCTGAGGTCGTTCTCACCTCCACACTTCACTTCTTTTTTGACAAGCGGCCACGCCAGAGGTCCTGGTTCTGCAAGCGCCTCCGCAGTCCTTCCTGTCGCCTCCAGAACCAGCACTACTTGCCttcatttcatcttttattCCGAAGTTGTTCCTCTGATTCACTTTTGGGCTCATTGCTTGGGAACATCACTTTTTACCCACACAGTAGAGGGATATGGCAAACCAAGGATGTGTCTCAAATTATAAAGGAAGCAAGACTCAGGAAGCAGGCCATGATAACGCTGGAGTTTGACTATGGCAAAAAATATCAGAGGCATCAGGAGCGCTTGTCAGCCTTCAGCCTGCCATACATGCTAGTGCATGCCAACGACCAAGCCATATCAGAGCCCAACAGTGTGGCCATGAGCTTACAGAGGTATGACCCATTCCCTGCGGATGAGAAGACCACTCAGTCTTCAAACACTTCACCTGATATGCGGGTTAAAAGGGACTTGTATTTTCCTGACCCCATCCAGAACAATGAACTTCCTGAAGTGGAGTATAACAGCTTCACGGAGCATGATAAGTGGGAAAGCACTTATCTAGCACTGAAGCCAAAGCCTTCTAAAAAGGAGCAGAGAAAGAAGGATCATGGGAGTGTTGATGGAACAAACAAGTTAGAGGTTCTCAGCTTTGATGAGAAAACCATGAAGAAAGCACGGAGGAGACAGTGGAGAGAGCCGCGTGTCTGTTCCAGGAGGTATCTGAAGGTGGATTTTGCAGATATTGGCTGGAGTGAATGGATCTTGTCCCCTAAATCCTTTGACGCCTACTACTGCGCAGGAACGTGTGAATTTCCCATACCTAAGGTTGTTCGCCCTTCCAACCATGCAACCATTCAAAGTATAGTGAAGACGGTTGGTATCATTCCAGGCATCCCAGAACCCTGCTGTGTACCTGAAAAAATGAACCCTCTCAGCGTCCTATTTCTGGATGAAGCCAAAAACATTGTCTTAAAGAACTACCCTGACATGTCAGTGGAGACATGTTCCTGTCGATAGGCTCAGTGGTCAATGGAATAACCACATATTTGGAGACATAGTTATGTGTTGTGGTTACAACACCAAAACGAAATGTGAAGATGCATAGTTGCCACATACTGTACAGTGCACACTACAAAGTTATGTTGTTAAGGGCTTTACACACTCTGTGCATTCATTCCAATTTACAGTTGCCTTTataatgaggattttttttatctataatGATGAACTTTGTCTCTGAGAatacattctgtgtaaatttatTAAGAGATTGTTTGGTTCACTAGTTATTGCCTTGCTGCTTTTTGTACGAAATAGAGTCATTATTTGTGATGGCAAATGATGGCAGACAGCAAAGATTTTGTCAAAATTCTATGTAGAGATATCCAGGTGGAACagagtttatttaaattatgcTTGGAATAAAAATGTCCATAGTAGGAAACAGTGTAGCACTTCTATTGTGCAACGAGACCAAGCACCAGGTAGTCAAAATGCTTGGCATTTAAGTTACTTTAAATAGTATATAAACATGTACCGCCTTCTGAACTGAGTTTACATGTCAATATATATCGTATAACATCAGCAGATACTCCACAGCTAGAGATTCAGTTTTAAAACTAATACTGAGGCTTTGAAACCAGGCTTCGGTTTCAAGACTGTTAAGCATTGAGCTAACAATAAGCCACTCATATTTAAACGTTTTCCTTGGAATATTTCCAAGTGGTTGTGTGTCAGAAGTAGACTACTCACCAAGGGCACCAATGTGTTAAATCATCCTCAGACAGCTTGtgttacttttaaaaatgtaatccaAGAGTTCAGAGACACTATAGGGGATTATGAGTGTGAATGGGAATGTATTATCTCCTTATCCATGTCTACATAACAGTATTTAATAATTGACCTAAGTGTGAAATATTTGGGTTGAATGTGTTTGTATACAAAACATATAAGGTCAATGTTTCAGTATGATATATgttagaaaatgtatttttgtacatgtgggtttttttaaattatgaactGAAATTAGTTATATGTATAGTGATatatagaatttaaaaaagagtCTTGATTTTGTAACAGCATATTGATATTTACTGTTAAAAGCAGGTTCTATTGAGAAGCTTTTGTTGTACAGATCTCTGAAAACATGTGAAGAGGGTCAACATTGATTGCTCTCTGAAAGCACCCTTCTCCACTTCGACATCAAAGAAAAGGATAGATGAGTCCTCGCTTCGCCTAGTCGACGTTTCAAACCCACTTCAAGAGCACCGGGTCTTTGAGAGCAGGATGTTAACGTTTTTCTCCCAACAAATGATGTCACTCCTTTCAAACACACTCAAGACATTGTCATCTGCAGCAGACCAGAGAAGCTAATGATTTATTTGAACATTAGCCAGTTAGTCAGTGCTAcgaataaaaaagtaaaatgaattaggatttttttccactgtcagtagttttggtttatttacatttccaaaaaatatacagtatgtggtaatatttatataatgcgTCTGATTCTCATGAATGCATTTTCCAGATTTATGAATGTTATTTGGTAGCAAGTTAATGATGTACATTACATTCTAAATGCAGGCATATAATTTTGGAAACATTTTGTATGATATATGCAATGCACATAACTGACAGAAGATGGTAAATggattcattttatatttcctataCTTAGTTATATATATTGTGATGTGCTCTGAGTGttagatgtgtttttttaatcatagtcCTACTGCCAGCAACCACTACCCActaaaacacataaaatcagACATGCTACCCAAAAGGGAATCCCCAGTCCCAGGTTCTTCTGGGAACTactttaataacattaaatagtTTCAATAGGATGTAAATACTAGGCAGTTAGTGAATGCTAATATTTCGATTTTCAAATGAGGTCAAGTCAATGAAAACTGTTCCCAAGAGGCAAGCAGTGCATGTGAATGGACAGAAGACATTTTGAATACAGCTGAAACATCTcgttttttaatcttattagcATCTCTTACAGCCAGGTCACTAATTATGACAGTATTATGCTGgaatttttttcacaaattgaTGACAGGCAGCATTAAGAACTTTGCAGAGGACGAAAGTTTGACTTTCCCATGaactgtctctctccctctctctgagaGATGGGTTTACACCACTTGCATAGTCTGCATGGGACTCTACTTCAAAATGTAGTACAGAGTGCCCTCCACAGGACTacgagtgtatgtgtgtttgtggtcaATAACTTATTCATGATcaacttaaataaaaacatgcattaactGATAAA

Function

NR:

description
PREDICTED: growth/differentiation factor 10-like

GO: NA

KEGG:

id description
K22674 GDF10, BMP3B; growth differentiation factor 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933289.2 True 4027 mRNA 0.40 3 16387991 16393038

Neighbor

gene id symbol gene type direction distance location
ptpn20 LOC108262844 coding upstream 29607 16323553 ~ 16358384 (+)
si:ch211-223a10.1 LOC108263376 coding upstream 108401 16271297 ~ 16279590 (+)
vstm4a vstm4,LOC108263377 coding upstream 168153 16210560 ~ 16219838 (+)
drgx drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289,LOC107668808 coding upstream 199058 16183009 ~ 16188933 (+)
ercc6 ercc6 coding upstream 206836 16163098 ~ 16181155 (+)
antxr1d LOC108263270,LOC108443423,LOC106589351,LOC107668779,LOC107708254,LOC107588727,LOC107673963,LOC107757100 coding downstream 5517 16398555 ~ 16422200 (+)
mettl18 mettl18 coding downstream 63380 16456418 ~ 16457819 (+)
golga7bb LOC108443489,LOC108263631,LOC107375346,LOC103368019 coding downstream 283082 16676120 ~ 16690614 (+)
slc25a28 slc25a28,LOC107601050,LOC107719215 coding downstream 414862 16807900 ~ 16824060 (+)
got1 got1,LOC107601049,LOC107665595 coding downstream 471770 16864808 ~ 16874716 (+)
G47265 c3h10orf71 non-coding upstream 184467 16192695 ~ 16203524 (+)
G47224 NA non-coding upstream 283941 16103836 ~ 16104050 (+)
G47084 NA non-coding upstream 352652 16033304 ~ 16035339 (+)
G47071 NA non-coding upstream 491912 15893581 ~ 15896079 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding upstream 672467 15711137 ~ 15715524 (+)
G47406 znf488,prdm8,LOC107757101,LOC107708270,LOC107673884,LOC107548615,LOC107588729,LOC107668783 non-coding downstream 1967 16395005 ~ 16397038 (+)
LOC117596920 NA non-coding downstream 49024 16442062 ~ 16451765 (+)
G47431 NA non-coding downstream 66207 16459245 ~ 16459911 (+)
LOC117596359 NA non-coding downstream 99280 16492318 ~ 16531380 (+)
G47672 NA non-coding downstream 445144 16838182 ~ 16838401 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 79093 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 150449 16234514 ~ 16237542 (+)
cxcl12a cxcl12 other upstream 253989 16124627 ~ 16134002 (+)
cxcl18a.1 LOC108263637 other upstream 312341 16070714 ~ 16075650 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 590787 15793406 ~ 15797204 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other downstream 72901 16465939 ~ 16467350 (+)
LOC113541016 ankrd2 other downstream 580644 16973682 ~ 16977029 (+)
dlg5a dlg5 other downstream 1783703 18176741 ~ 18222050 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other downstream 2509400 18902438 ~ 18912195 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 2633930 19026968 ~ 19036644 (+)

Expression


Co-expression Network