LOC113538327 (LOC108263699,LOC108420514)


Basic Information

Item Value
gene id LOC113538327
gene name LOC108263699,LOC108420514
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22300917 ~ 22317379 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933301.2
TTTTTATGTATCTTGTCAAATGCAGTCAGCATACTCAGAAGCctcttctctcattctctctctttactcCTTCAGTATGTGTAGTTCCAGCTCTTGATGATAACCACGTTGCCAAAATCATGACCTTCATGCTCAAATTTTGGCCTTCAACCAGCGCTAAAACCGGCGACATGTTATATGTCAATCTGTTACCTTTTTTCCATAGTTAATATTACAGAACAACTTCATGAATATCCTGTCAATTGACAATATCAGCAATATTTATGGAGATGTTGGAAATACACATAATCCTTTCACATGCTTGAGGAGCCTCCTAAGTGCGAGAAGAGACTGGAGGAATGTGACAGTAAGTAAAGAATGGCCTGTCAGTGATGGAGAACTTTAGTCACTAACATGATGCCTGTGAGTGATCTACCCCAGACCTCTGCTctggtgtgtaaggtgtgtttCATGTCAGGGATAATTAGCAAAGAAATATGATTCATATCAGAATGGATCATGTATGTATGTGGGTCATTGCTGATGCACATGATTATCACAGTGTTTACCTGGTGATTAAATGTGCTTTAAGACATGCAGGAGCAGATAAAGTTGTCATAAACACAGCTCTAGGCTTTGGCTTGTGTTCTTGGCCTGTAACCTCTGCTCTTATCAAACACTATGAGATAAATCCTGTTACAGTGCACTACAGTAGGTTTTATGAGTTAAGGGCAGATGGACTGTTGTGTAATGAGTACATGAGCATACTTTTACGATTCACTGGCTAGAGGTAGCTGAGGAACAGACCATGTGAATACAAACACAAGTGGAGTTTAAATACCCTGAAGGTCACACGACttacaataaatatacatactgGAGAGTCAAAACAGCAAAGTAACTCAGACTTCGCATGTGGCAAGGGTAATagttaaataaggaataatacaTGACAGTGTCTGAAGGCAGTAGCAGTGAGTCAGTGAAGGAGAGATCCAGATCAGTGCAACAGGACCAAGTATGAAGAGAGTGAGTCGAGTCTCTCCCAGTGGCCATGAAAACCCGGGTCTGGAGCTTAGTGATGCAGCGTCCAGCCAGTCAATGCAGCAATATACTGGTCCGTGTACCTCAGTAATGTCAGCCTCAGTGGTGCGCTCTGTTACCCAGTGGGCTTCATATGCCCGGGGTCGCTGGAAACGGGCTACCCGTAAATGCATGAGGAGAAAACCCTCAGGGGAATCTTTAAGCAGCAAGTACAAGGGCCTTGCCTGGGAGGAAGATGTTGTAGATGGAGACGCCAAAGAGCAGCAGTTGAACAAACGTCTGCTGGATCACTTCAGAGTGCTGGCTGCCAATAACGAAGACACAGATGAGGTTGACCTGCAATTCCTGAATGAAATCCTTAGAGACGGAGCTGATCCCAATTCAGCAGACAAATATGGACAGACAGCACTTCATGAGATCTCTCGAGCCTGGAATGTAGATGTGATGAGGTTCTTCCTGGAGAGAGGTGCTGATATCCGCAGGCCTGATGCATTTGGGGTTACGCCTCTCCACGTGGCCGCAGCCTTGGACTATGAAGATATGATTCACTTTCTACTAGAAAGAGGAGCTGACATTGAGGCACACACGTATAAAGACATGCAGACACCATTACACTTTGCTGCTAAGAACGATGCTACTGAGGCAATTCAGGTTCTGCTGCGGAATGGAGCAGACATTACTGCACACGACTACAAACAAAGAACTCCACTACAACTTGCTGTCAACCTAGATCGCAGTgaagctgcacacacactgttggaGCTGGGGGCGGATGCTGGGGTTCAGGATTCTGATGGACAGCTATGTATCACTGCCATGATTGGCAAGATGACGCCCGTGGCCAATCTGGCACTGAATCAGTTTCACGTGAAAGACCGAATGACACGCCAGCAGTTCTTCTACCTTCATCTGCTGGAGCCAGAGCGAACACGCCTGAAAAAATCACACGGGAAAACCAGAAGTGAGCCGACATCACCGCTAGAGTTTATTGTCCAACAAGGGAAACTGGATCTCATTATGCATCCTGTAGTGTTAAAGCTCATCACAGTCAAATGGAACCTGTATGGAAGACTTGGTGCATGGATTCTCCTGCTgctcaattttttatttatcgtTTCCTGGACCACAGTGGCCATATCTGTGTCCGTGTCACCAGAGGAGGACAAACGCTATGTTTTCCCTCAGGACTGGTGGcgtgtgtttgtggtgatgaTAGCGTTAGGGCTGACGGTGCTGGAGGTGTACAGGGAGGTGATGGAGATTCTGCGCTCTGTTAGAAAACTAAAAGATTGGCAGCAGTGGTGTGAAGAGAGACTCAATGAAGATCTGGCTTGCACACACCCCATGTGGCCAGAGGAACGTCACTACTTCGAGGGTCAGATTAAGTTCATTCGCAGCTTGAAGGGAAGCTACTTACAGGACCCCTGGAATATATTTGATTGGCTTGTGTACGTATTGCTGATAGCAGTTTTGGGTCTTCACTTGGCTGATGTTTACCTGGTCTCTCAGACACTCCGAATGTATAGCCTCCGCATCTTCGCTGTGGCCGTCATCTTCATCTGGCTCAGGCTGATGAAGCATGTCAGGGCATTTAGGGTTATGGGTCCcttcattgtcatgctggggAAGATAGTGGGTGACGTGCTCCGCTTCCTCTTCTTATATGCAGAGATCTATGTCCCATATGCCTGTGCTTTCTGGATTATATTTGGAGGCTTAACAGCTGTACCTAGTATGCAAACAGTGCCGCAGATGCTCTATAGCCTGTACCGGATAACCCTTGTGGACGAGTATGAGTTTGATGCCATGGTGGCTGTGGACTCTGTTATGGCTCACTTGCTTTGTGGTACATTTCTGGCCCTGTCTGCTGTTCTGTGTGTCAACCTGATGATTGCTCTGCTCTCAGACACCTTTCAAAGAGTATATGACAATGCACTGGCAAACGCAGTGATGCAACAGGCCTCCATCATCCTGCAGGTAGAAGAATCCATGCCTCACCTGTGGCATTTCTATGACAAACAGTATATCCACAGCTGCTGTGCCCCACTCAGAGAGTTTTATGATGATGAAATCATAACAGATCCAGATCAGCATGAAGAGATGAAGAAACTTACAGCAGAGATTAAGGATACATTGGATGAGTACTTGACCATCCAAAAAGAGGCCAAACTACTCAACCCAGCTCAAACAGATGATGGTAACAGATCTCCCAGATGGAATAGTTTCTCATCTCAACAAGAACATCTCGGCAGTCTAATGAGACTGGAAAAGGACCAACAGCAGCAGATTCAGGATCTGCAAGACCTAAGAGAAGATGTAAAGAAGCTCCAGGGATTACTGCTACAGCTGATTCCGTCAAAGCCTACAACATCTGCTGATGTTCCAAATATATCTTCAGCAGGGCTTCGGTAGGCTGGAACGAACCACGTTTTGGTTTTTGAAGTTGGACAAGAAGCAAGCCCTTTGAAAGATAACAAGCATGTGTTAACTATAACAAACTCTCTAACTACATGTGGGTAATTGTTAAATATTTGGAATGCTGACCACGGTATATTCAGTGCTGGTTTCACTGGTTTTTAACTTGACTTCACTTTAAGAACTTCTAGTTAACATACAGCATGTACTAGGTTAAACTGTGTGTTGGTTTTATCCCTGGCCTACAGGGTTTTATGGTCAATAAATTAGTTTATCAAA
>XM_026933310.2
TATTTAGTAATGTAACGAACATCCTATTAGCCTGTTGATCTTttctaactaaaaaaaaactgtaaaattgaTTTCCCAGAATATCCTGTCAATTGACAATATCAGCAATATTTATGGAGATGTTGGAAATACACATAATCCTTTCACATGCTTGAGGAGCCTCCTAAGTGCGAGAAGAGACTGGAGGAATGTGACAGTAAGTAAAGAATGGCCTGTCAGTGATGGAGAACTTTAGTCACTAACATGATGCCTGTGAGTGATCTACCCCAGACCTCTGCTctggtgtgtaaggtgtgtttCATGTCAGGGATAATTAGCAAAGAAATATGATTCATATCAGAATGGATCATGTATGTATGTGGGTCATTGCTGATGCACATGATTATCACAGTGTTTACCTGGTGATTAAATGTGCTTTAAGACATGCAGGAGCAGATAAAGTTGTCATAAACACAGCTCTAGGCTTTGGCTTGTGTTCTTGGCCTGTAACCTCTGCTCTTATCAAACACTATGAGATAAATCCTGTTACAGTGCACTACAGTAGGTTTTATGAGTTAAGGGCAGATGGACTGTTGTGTAATGAGTACATGAGCATACTTTTACGATTCACTGGCTAGAGGTAGCTGAGGAACAGACCATGTGAATACAAACACAAGTGGAGTTTAAATACCCTGAAGGTCACACGACttacaataaatatacatactgGAGAGTCAAAACAGCAAAGTAACTCAGACTTCGCATGTGGCAAGTGTCTGAAGGCAGTAGCAGTGAGTCAGTGAAGGAGAGATCCAGATCAGTGCAACAGGACCAAGTATGAAGAGAGTGAGTCGAGTCTCTCCCAGTGGCCATGAAAACCCGGGTCTGGAGCTTAGTGATGCAGCGTCCAGCCAGTCAATGCAGCAATATACTGGTCCGTGTACCTCAGTAATGTCAGCCTCAGTGGTGCGCTCTGTTACCCAGTGGGCTTCATATGCCCGGGGTCGCTGGAAACGGGCTACCCGTAAATGCATGAGGAGAAAACCCTCAGGGGAATCTTTAAGCAGCAAGTACAAGGGCCTTGCCTGGGAGGAAGATGTTGTAGATGGAGACGCCAAAGAGCAGCAGTTGAACAAACGTCTGCTGGATCACTTCAGAGTGCTGGCTGCCAATAACGAAGACACAGATGAGGTTGACCTGCAATTCCTGAATGAAATCCTTAGAGACGGAGCTGATCCCAATTCAGCAGACAAATATGGACAGACAGCACTTCATGAGATCTCTCGAGCCTGGAATGTAGATGTGATGAGGTTCTTCCTGGAGAGAGGTGCTGATATCCGCAGGCCTGATGCATTTGGGGTTACGCCTCTCCACGTGGCCGCAGCCTTGGACTATGAAGATATGATTCACTTTCTACTAGAAAGAGGAGCTGACATTGAGGCACACACGTATAAAGACATGCAGACACCATTACACTTTGCTGCTAAGAACGATGCTACTGAGGCAATTCAGGTTCTGCTGCGGAATGGAGCAGACATTACTGCACACGACTACAAACAAAGAACTCCACTACAACTTGCTGTCAACCTAGATCGCAGTgaagctgcacacacactgttggaGCTGGGGGCGGATGCTGGGGTTCAGGATTCTGATGGACAGCTATGTATCACTGCCATGATTGGCAAGATGACGCCCGTGGCCAATCTGGCACTGAATCAGTTTCACGTGAAAGACCGAATGACACGCCAGCAGTTCTTCTACCTTCATCTGCTGGAGCCAGAGCGAACACGCCTGAAAAAATCACACGGGAAAACCAGAAGTGAGCCGACATCACCGCTAGAGTTTATTGTCCAACAAGGGAAACTGGATCTCATTATGCATCCTGTAGTGTTAAAGCTCATCACAGTCAAATGGAACCTGTATGGAAGACTTGGTGCATGGATTCTCCTGCTgctcaattttttatttatcgtTTCCTGGACCACAGTGGCCATATCTGTGTCCGTGTCACCAGAGGAGGACAAACGCTATGTTTTCCCTCAGGACTGGTGGcgtgtgtttgtggtgatgaTAGCGTTAGGGCTGACGGTGCTGGAGGTGTACAGGGAGGTGATGGAGATTCTGCGCTCTGTTAGAAAACTAAAAGATTGGCAGCAGTGGTGTGAAGAGAGACTCAATGAAGATCTGGCTTGCACACACCCCATGTGGCCAGAGGAACGTCACTACTTCGAGGGTCAGATTAAGTTCATTCGCAGCTTGAAGGGAAGCTACTTACAGGACCCCTGGAATATATTTGATTGGCTTGTGTACGTATTGCTGATAGCAGTTTTGGGTCTTCACTTGGCTGATGTTTACCTGGTCTCTCAGACACTCCGAATGTATAGCCTCCGCATCTTCGCTGTGGCCGTCATCTTCATCTGGCTCAGGCTGATGAAGCATGTCAGGGCATTTAGGGTTATGGGTCCcttcattgtcatgctggggAAGATAGTGGGTGACGTGCTCCGCTTCCTCTTCTTATATGCAGAGATCTATGTCCCATATGCCTGTGCTTTCTGGATTATATTTGGAGGCTTAACAGCTGTACCTAGTATGCAAACAGTGCCGCAGATGCTCTATAGCCTGTACCGGATAACCCTTGTGGACGAGTATGAGTTTGATGCCATGGTGGCTGTGGACTCTGTTATGGCTCACTTGCTTTGTGGTACATTTCTGGCCCTGTCTGCTGTTCTGTGTGTCAACCTGATGATTGCTCTGCTCTCAGACACCTTTCAAAGAGTATATGACAATGCACTGGCAAACGCAGTGATGCAACAGGCCTCCATCATCCTGCAGGTAGAAGAATCCATGCCTCACCTGTGGCATTTCTATGACAAACAGTATATCCACAGCTGCTGTGCCCCACTCAGAGAGTTTTATGATGATGAAATCATAACAGATCCAGATCAGCATGAAGAGATGAAGAAACTTACAGCAGAGATTAAGGATACATTGGATGAGTACTTGACCATCCAAAAAGAGGCCAAACTACTCAACCCAGCTCAAACAGATGATGGTAACAGATCTCCCAGATGGAATAGTTTCTCATCTCAACAAGAACATCTCGGCAGTCTAATGAGACTGGAAAAGGACCAACAGCAGCAGATTCAGGATCTGCAAGACCTAAGAGAAGATGTAAAGAAGCTCCAGGGATTACTGCTACAGCTGATTCCGTCAAAGCCTACAACATCTGCTGATGTTCCAAATATATCTTCAGCAGGGCTTCGGTAGGCTGGAACGAACCACGTTTTGGTTTTTGAAGTTGGACAAGAAGCAAGCCCTTTGAAAGATAACAAGCATGTGTTAACTATAACAAACTCTCTAACTACATGTGGGTAATTGTTAAATATTTGGAATGCTGACCACGGTATATTCAGTGCTGGTTTCACTGGTTTTTAACTTGACTTCACTTTAAGAACTTCTAGTTAACATACAGCATGTACTAGGTTAAACTGTGTGTTGGTTTTATCCCTGGCCTACAGGGTTTTATGGTCAATAAATTAGTTTATCAAA

Function

NR:

description
PREDICTED: transient receptor potential cation channel subfamily A member 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933301.2 True 3717 mRNA 0.45 22 22300917 22317379
XM_026933310.2 False 3534 mRNA 0.45 21 22300917 22316989

Neighbor

gene id symbol gene type direction distance location
ubr2 ubr2 coding downstream 1555 22266696 ~ 22299362 (-)
pkdcca pkdcc coding downstream 95942 22180147 ~ 22204975 (-)
LOC113544981 NA coding downstream 390124 21908981 ~ 21910793 (-)
si:ch73-105b23.6 LOC108262810 coding downstream 698658 21577863 ~ 21602259 (-)
calm2a calm1,LOC102293206,LOC102778633,LOC107396020 coding downstream 726836 21569456 ~ 21574081 (-)
prkn park2 coding upstream 40 22317419 ~ 22424411 (-)
ncoa4 ncoa4 coding upstream 271673 22589052 ~ 22598199 (-)
tjap1 tjap1,LOC107728071,LOC107559778 coding upstream 309255 22626634 ~ 22689305 (-)
LOC113540869 dnph1 coding upstream 409527 22726906 ~ 22729307 (-)
LOC113540936 dnph1 coding upstream 420829 22738208 ~ 22742475 (-)
G51058 NA non-coding downstream 108001 22107092 ~ 22192916 (-)
LOC117596869 NA non-coding downstream 123586 22165739 ~ 22177331 (-)
LOC113538981 NA non-coding downstream 136493 22153348 ~ 22164424 (-)
G51053 NA non-coding downstream 241596 22058153 ~ 22059321 (-)
G51050 NA non-coding downstream 265755 22034943 ~ 22035162 (-)
G51169 qki,LOC107739475,LOC107565601,LOC107669572 non-coding upstream 226848 22544227 ~ 22546490 (-)
G51276 NA non-coding upstream 288168 22605547 ~ 22608037 (-)
G51289 mea1 non-coding upstream 329971 22647350 ~ 22743272 (-)
G51389 NA non-coding upstream 572680 22890059 ~ 22890274 (-)
G51390 NA non-coding upstream 572918 22890297 ~ 22890507 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other downstream 177268 22035285 ~ 22123649 (-)
G50837 NA other downstream 350728 21949855 ~ 21950189 (-)
plekhh2 plekhh2 other downstream 655405 21611663 ~ 21645512 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other downstream 822212 21387743 ~ 21478705 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other downstream 1931472 20357934 ~ 20369445 (-)
LOC113541574 LOC108263228 other upstream 248392 22565771 ~ 22571868 (-)
znf318 znf318 other upstream 456976 22774355 ~ 22788804 (-)
G51576 NA other upstream 1130529 23447908 ~ 23454217 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other upstream 1699517 24016896 ~ 24040100 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other upstream 1790972 24108351 ~ 24132483 (-)

Expression


Co-expression Network