rgs17 (rgs17,LOC108262465,LOC108434957,LOC107552952,LOC107725462,LOC107743539,LOC107666476)


Basic Information

Item Value
gene id rgs17
gene name rgs17,LOC108262465,LOC108434957,LOC107552952,LOC107725462,LOC107743539,LOC107666476
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9316791 ~ 9338616 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933348.2
CATGCGCAGTGCGATCCCCACTGGCTCGGTGCTGAAGTTGGGCGGATGGCAGAAAAAACAGGGTGAGCGCTGATGGAGATAAAACGGCAGGGCGTGCGTTCGCCGCGTGACACCGCGAATTTCGGTCAAAAACAACTGTAAAGTCAACGCATTCAGAAGAGTAACGCCAGGAAAAGAAGAGGatgttttatcCTGGTGTTCCTTGCCCTTGATTGAAGAAAAGGATTTGCCTGTGAATACCAGGTGTAGCAAACCTACCTCTACCTACCACACCTTCTCTTCAAGCATCCTGAACCAGTGATGGTAAGAGAAGAAACGAGAGGCCACCAGTGCGTTTGTATCCTGGCACCGTTCCTAACTGAACGTTCGACTGTATCGCCATGAGGTTTCTGCCTGATCTGTGGATGGAGAGCTGCTAATTTGCATGCCGCAGAGTGTGAGTGGAGTTGAGATGAGGAAACAGCAGCAGGCCCACATTGAAGGACCCCCTCAGGCCCCCGGGCACCCGAGACCGAACACCTGCTGTCTGTGCTGGTGCGGCTGCTGCAAATGCCTCTGGAATGAAGAGAGTAGGGAACATCCCGAGCGGCAAACATGTACAAAAATGGACAGCATAGAAGCAACAGAAGAACAGCATCCCACACTGGATGAAGTTGTAGCCTGGGCACGAAGCTTCGAGCTCATGATGCGCTCCTCAGAGGGCAGAGACATTTTTCGGCAGTTCCTCCGGTCCGAGTACAGTGAGGAGAACCTGATGTTCTGGATAGCCTGTGAGGAATTAAAGAAGGAAACCAACCCAGCAGCTATAGATGAGAAAGCAAGGATCATTTATGAGGATTATGTTTCTATCCTGTCACCAAAAGAGGTCAGTTTGGATTCCCGGGTGAGGGAGGGCATCAACCAGAGCCTGTCAGAGCCCAGCAGCCTGATGTACGAGGAGGCACAGCTCCAGATCTACACGCTCATGCACAGAGACTCATTCCCACGTTTCCTCAACTCATCTGTTTACAGGGACCTCCTGGAACGAAAGAGAGCCTGCTTAGACACCTAAGGTTCCAGCCAAAAactcaagacaaaaaaaaacgtccTAAGGTGCCACTACGGAAAGG

Function

symbol description
rgs17 Is expressed in cranial ganglion; neurons; pectoral fin; and retinal ganglion cell layer. Orthologous to human RGS17 (regulator of G protein signaling 17).

NR:

description
regulator of G-protein signaling 17-like

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933348.2 True 1109 mRNA 0.51 6 9316791 9338616

Neighbor

gene id symbol gene type direction distance location
phactr2 phactr2,LOC107601847,LOC107552951,LOC107666519,LOC107676579 coding upstream 105498 9152330 ~ 9211293 (+)
cog2 cog2,LOC107601846,LOC107666500,LOC107725477,LOC107743537,LOC107552949 coding upstream 173761 9129979 ~ 9143030 (+)
galnt2 galnt2,LOC107676591,LOC107725470,LOC107666462,LOC107743534 coding upstream 221108 9001659 ~ 9095683 (+)
si:ch73-109d9.1 LOC108262808,LOC107556808,LOC107556784 coding upstream 334918 8968989 ~ 8981873 (+)
si:ch73-109d9.3 LOC108262807,LOC103132489,LOC106930291,LOC106944652,LOC102224490,LOC103464124,LOC105931504,LOC107393648 coding upstream 348861 8963903 ~ 8967930 (+)
map3k21 LOC108263591,LOC108434955,LOC107676554 coding downstream 44022 9382638 ~ 9408518 (+)
prim2 prim2,LOC108263846,LOC108443732,LOC107676604,LOC107666539 coding downstream 82450 9421066 ~ 9487539 (+)
si:dkey-103j14.5 LOC108263510,LOC108443735 coding downstream 305193 9643809 ~ 9666593 (+)
kifbp kif1bp,LOC107676599,LOC107743600 coding downstream 401174 9739790 ~ 9745528 (+)
vps26a vps26a,LOC107666532,LOC107676600 coding downstream 425017 9763633 ~ 9772357 (+)
G43137 NA non-coding upstream 92198 9224363 ~ 9224593 (+)
G42848 NA non-coding upstream 301750 9012486 ~ 9015041 (+)
G42833 NA non-coding upstream 362765 8953522 ~ 8954026 (+)
G42792 NA non-coding upstream 445865 8812836 ~ 8870926 (+)
G42783 NA non-coding upstream 545728 8769324 ~ 8771063 (+)
G43186 NA non-coding downstream 5439 9344055 ~ 9347236 (+)
G43330 NA non-coding downstream 150143 9488759 ~ 9488959 (+)
G43337 NA non-coding downstream 156361 9494977 ~ 9495210 (+)
G43360 NA non-coding downstream 188245 9526861 ~ 9527159 (+)
G43422 NA non-coding downstream 329995 9668611 ~ 9671740 (+)
trnak-cuu NA other upstream 846910 8469624 ~ 8469881 (+)
G42685 NA other upstream 850479 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 1645381 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 1686651 7620545 ~ 7630140 (+)
G42075 NA other upstream 2095768 7203950 ~ 7221023 (+)
sprn sprn other downstream 1213643 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 1255958 10594574 ~ 10608704 (+)
dntt dntt other downstream 1760977 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 2344248 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 2368319 11706935 ~ 11707005 (+)

Expression


Co-expression Network