six2a (six2,six2a,LOC107666385,LOC107602488,LOC107602487,LOC107711421)


Basic Information

Item Value
gene id six2a
gene name six2,six2a,LOC107666385,LOC107602488,LOC107602487,LOC107711421
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21207017 ~ 21210374 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933654.2
AGAGAAAATCAAGGCTATTATTTCTATCGGTGGGCGGGTTTTAAATGAAGGGAATAATCAGTCAGCCAGTCCAGGGAGCCACCTCAAAGCATATCGGGTTACTTTGAATGACAGCGTAACCATGGCGAATAATTTGACTAAAACTATTGTCTTATCCTCGCCGTCCCTGGGTCGGAtaaccaaccaatcagagtTCACACAATCGGTTTTCTTGCCAGCTtagaataatattattaaaacgAGCGAGCGAGCTTGGTAGTCGGGAGAACGCTATGCTGAAACGGCACAGAAAAGACGGCGAGCTGCTCACTCGGGAGGGAAAAGTTTGTCTTGTGTGTTTTAGATGGATATACGCTGCGTTACTGTCGCCTGAGTGGATCTGAAGTATCGGGCCCACTTCATTCGGAgggaaggatttttttttatcgaTATTCGAAGACGTTCTGAAATTGTATCGTTCATGGACTTCCAGCGCCTTGTGCTTGAGAATCGTTGTCCTTATCGATAACTCGGACGAAGCATTTGTCAGCGAAGAACCATGTCTATGCTTCCGACTTTCGGCTTTACGCAAGAGCAAGTGGCGTGCGTGTGCGAGGTCCTGCAGCAGGGCGGCAACATCGAGCGCCTTGGCCGCTTTCTGTGGTCCCTGCCGGCCTGCGAGCACCTCCACAAGAACGAGAGCGTGCTCAAGGCCAAGGCCGTGGTCGCTTTCCACCGGGGAAACTTCAGAGAGCTCTATAAAATCCTCGAGAGCCACCAGTTCTCGCCGCACAACCACCCGAAACTACAGCAGCTGTGGCTCAAGGCGCACTACATCGAGGCGGAGAAGCTGCGCGGACGGCCGCTTGGAGCCGTGGGCAAGTACCGAGTGCGTAGGAAGTTCCCGCTGCCCCGGTCCATCTGGGATGGCGAGGAGACAAGCTACTGCTTTAAGGAGAAGAGCCGCAGCGTGCTGAGGGAGTGGTACACCCATAACCCGTACCCTTCACCGCGGGAAAAGCGCGAGCTGGCCGAAGCCACCGGCCTGACCACCACTCAGGTCAGCAACTGGTTCAAAAACAGGAGGCAACGCGACCGCGCGGCGGAGGCCAAAGAAAGgGAAAACAACGAGAACTCCAACACGAACAGCCACAACGCACTCACGTCGTCCATGAACGGAAACAAGACGATGATGGGCAGCTCGGACGAGGACAAAACCCCCGTCGGAACTCCAGATCACACGTCGTCGAGCCCTGCGCTGCTGCTCACTTCCGCCTCCGGCCTGCAGCCTCTACACGGCCTGGCTGCTCCGCCTGCACCCAGCGCAGTACCAGTGCCAAGCGCCGTGACTGTACCAAGCGCGGACTCACtgcaccaccaacaccaccaccacggCCTGCATGACACCATACTGAACCCTATGGCCTCCAACCTGGTCGATCTGGGCTCTTAAAACACAAAACGCTAGGAGCAGGACGCTTGTCGACTGCAGACTTGTGGAGCAAAAACCCAGACAGGGAAGGTGTTGGACAGAGGGAGTGAGTTGTGGATGATGTTTTGGATGGCCTACACTCAAAGCCAATAAGAGGGTCCTTGATGAGGTATTTTTCTAGAATGTTATGCTCAAAGCCACGGAACTACAAGGTCTTAATTCTTGTTTTCGACGTCGTTATTCCTTCAGATTTCGACACATCCGTGAATTGTCGGTCGTATACCCCATTTGtttacatgttttcttttttttaaaggccatAGTAAGTTTCCTTTTGATGGGGTGCCGTcatatgaagtgttttattaccaGCACAGCGATTATTAAGCTTAGcttattttcatttgtatttttttttctttttggaaacCGACTGCATGTAAAACTTTGCGatcaagtaataaaatataagccCGATCCCACCATAGTTTCATATACCCTTTACAATAAAAGCTAATGTGCATTTATTGAGAA

Function

symbol description
six2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within pronephros development. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in head mesenchyme; immature eye; intermediate mesoderm; and nervous system. Orthologous to human SIX2 (SIX homeobox 2).
six2 Enables sequence-specific double-stranded DNA binding activity. Involved in cell migration; cell population proliferation; and kidney development. Predicted to be part of chromatin and transcription regulator complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: homeobox protein SIX2 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048793 pronephros development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19472 SIX2; homeobox protein SIX2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933654.2 True 1945 mRNA 0.51 2 21207017 21210374

Neighbor

gene id symbol gene type direction distance location
prepl prepl coding downstream 181402 21010692 ~ 21025615 (-)
lrpprc lrpprc coding downstream 269380 20886598 ~ 20937637 (-)
abcg5 abcg5,LOC107747536,LOC107733783 coding downstream 329173 20868389 ~ 20877844 (-)
dync2li1 dync2li1 coding downstream 341773 20855695 ~ 20865244 (-)
sdccag8 sdccag8,LOC108263444 coding downstream 404948 20749672 ~ 20802069 (-)
srbd1 srbd1 coding upstream 66411 21276785 ~ 21331058 (-)
epas1b epas1 coding upstream 137836 21348210 ~ 21384116 (-)
mcfd2 mcfd2,LOC105900047,LOC107699287 coding upstream 311834 21522208 ~ 21526777 (-)
stpg4 NA coding upstream 352343 21562717 ~ 21568242 (-)
calm2a calm1,LOC102293206,LOC102778633,LOC107396020 coding upstream 359082 21569456 ~ 21574081 (-)
G50309 NA non-coding downstream 1056 21204676 ~ 21205961 (-)
G50295 NA non-coding downstream 16275 21190535 ~ 21190742 (-)
G50290 NA non-coding downstream 22581 21183830 ~ 21184436 (-)
G50264 NA non-coding downstream 89655 21116647 ~ 21117362 (-)
G50262 NA non-coding downstream 91402 21115416 ~ 21115615 (-)
G50318 NA non-coding upstream 6284 21216658 ~ 21216886 (-)
G50433 NA non-coding upstream 135768 21346142 ~ 21385497 (-)
G50619 NA non-coding upstream 302231 21512605 ~ 21512822 (-)
G50624 NA non-coding upstream 304778 21515152 ~ 21515642 (-)
G50626 NA non-coding upstream 307441 21517815 ~ 21518078 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other downstream 837572 20357934 ~ 20369445 (-)
atp10d atp10d,LOC107556926 other downstream 950497 20224909 ~ 20256520 (-)
metap1 metap1,LOC107556924 other downstream 1001424 20182053 ~ 20205593 (-)
slc4a11 slc4a11,LOC107695019 other downstream 1438883 19716600 ~ 19768134 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other downstream 1539356 19614717 ~ 19667661 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other upstream 177369 21387743 ~ 21478705 (-)
plekhh2 plekhh2 other upstream 401289 21611663 ~ 21645512 (-)
G50837 NA other upstream 739481 21949855 ~ 21950189 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other upstream 824911 22035285 ~ 22123649 (-)
LOC113541574 LOC108263228 other upstream 1355397 22565771 ~ 22571868 (-)

Expression


Co-expression Network