Item | Value |
---|---|
gene id | htt |
gene name | htt,LOC107679870 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047597.1 |
NCBI id | CM018543.1 |
chromosome length | 33776708 |
location | 8220599 ~ 8270117 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
htt | Acts upstream of or within several processes, including chordate embryonic development; positive regulation of brain-derived neurotrophic factor receptor signaling pathway; and regulation of cell-cell adhesion mediated by cadherin. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in brain; head; intermediate cell mass of mesoderm; and post-vent region. Used to study Huntington's disease. Human ortholog(s) of this gene implicated in Huntington's disease and Parkinson's disease. Orthologous to human HTT (huntingtin). |
description |
---|
huntingtin isoform X1 |
id | name | namespace |
---|---|---|
GO:0006879 | cellular iron ion homeostasis | biological_process |
GO:0090017 | anterior neural plate formation | biological_process |
GO:0031550 | positive regulation of brain-derived neurotrophic factor receptor signaling pathway | biological_process |
GO:0051216 | cartilage development | biological_process |
GO:0001841 | neural tube formation | biological_process |
GO:0048884 | neuromast development | biological_process |
GO:2000047 | regulation of cell-cell adhesion mediated by cadherin | biological_process |
GO:0071698 | olfactory placode development | biological_process |
GO:0021954 | central nervous system neuron development | biological_process |
GO:0048703 | embryonic viscerocranium morphogenesis | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0008134 | transcription factor binding | molecular_function |
id | description |
---|---|
K04533 | HD; huntingtin |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026933683.2 | True | 11205 | mRNA | 0.51 | 67 | 8220599 | 8270117 |
XM_026933693.2 | False | 11187 | mRNA | 0.51 | 67 | 8220599 | 8270117 |
XM_026933702.2 | False | 9661 | mRNA | 0.53 | 66 | 8222098 | 8270117 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
dok7 | dok7 | coding | downstream | 97329 | 8083051 ~ 8123270 (-) |
LOC117596360 | NA | coding | downstream | 151275 | 8053494 ~ 8069324 (-) |
adra2c | adra2c,LOC107552592,LOC107671617,LOC107556512,LOC107712015,LOC103033245,LOC107752971,LOC107674202 | coding | downstream | 310625 | 7907228 ~ 7909974 (-) |
hmx1 | LOC108262852 | coding | downstream | 391053 | 7826634 ~ 7829546 (-) |
hmx4 | LOC108262851 | coding | downstream | 395123 | 7823130 ~ 7825476 (-) |
trnam-cau_1 | NA | coding | upstream | 196867 | 8466984 ~ 8467055 (-) |
trnam-cau_2 | NA | coding | upstream | 197919 | 8468036 ~ 8468107 (-) |
trnam-cau_3 | NA | coding | upstream | 198954 | 8469071 ~ 8469142 (-) |
tmem132a | LOC108262772 | coding | upstream | 201413 | 8471530 ~ 8479019 (-) |
vps37c | LOC108262788,LOC108426122 | coding | upstream | 224019 | 8494136 ~ 8505726 (-) |
G42650 | NA | non-coding | downstream | 16194 | 8204197 ~ 8204405 (-) |
G42642 | NA | non-coding | downstream | 30323 | 8189735 ~ 8190276 (-) |
LOC113544822 | NA | non-coding | downstream | 240836 | 7977141 ~ 7979763 (-) |
G42426 | NA | non-coding | downstream | 399738 | 7820650 ~ 7820861 (-) |
G42401 | NA | non-coding | downstream | 526106 | 7693214 ~ 7694493 (-) |
G42665 | NA | non-coding | upstream | 29063 | 8299180 ~ 8299444 (-) |
G42671 | NA | non-coding | upstream | 110223 | 8380340 ~ 8380715 (-) |
G42894 | NA | non-coding | upstream | 222951 | 8493068 ~ 8493304 (-) |
G42914 | NA | non-coding | upstream | 281013 | 8551130 ~ 8551355 (-) |
G42970 | NA | non-coding | upstream | 484034 | 8754151 ~ 8754896 (-) |
rgs12b | rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 | other | downstream | 4048 | 8134641 ~ 8216551 (-) |
maml3 | maml3 | other | downstream | 630936 | 7438904 ~ 7589663 (-) |
lef1 | lef1,LOC103361279 | other | downstream | 1015900 | 7161474 ~ 7204699 (-) |
gab1 | gab1 | other | downstream | 2401086 | 5756017 ~ 5819513 (-) |
lsm6 | lsm6 | other | downstream | 2992632 | 5203706 ~ 5227967 (-) |
trnam-cau_4 | NA | other | upstream | 199869 | 8469986 ~ 8470057 (-) |
trnae-cuc_7 | NA | other | upstream | 200241 | 8470358 ~ 8470429 (-) |
LOC113539440 | NA | other | upstream | 213186 | 8483303 ~ 8492983 (-) |
zdhhc5a | zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 | other | upstream | 484797 | 8754914 ~ 8783798 (-) |
G42967 | timm10,LOC107674252,LOC107746912,LOC107556822 | other | upstream | 531126 | 8801243 ~ 8853794 (-) |