cuedc2 (cuedc2)


Basic Information

Item Value
gene id cuedc2
gene name cuedc2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15673435 ~ 15677449 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933724.2
gtcatacatttttaaacaatccaCGGCGCGCAGGGTTAAGAAATTGCCCACTTGAAGTATATAATAACCTCCTGTTTCAGCAAAACCTATTTATCTGCAGCCATGATGCGCTCACTTTGTAGGATGGAGCTTCAGAAGATTATTCATGATGCACTGTATGACTTCGTCCGATCACATATCCCGCATGCAGATCTGAGCACCCTGGACGATGTGCTGCTTTCCTACATCACTGGTGTGCTGGAAGATTTGGGCTCCCAAGCGAGCGTTGAAGAAAACTTTGACGTTGAGGTGTTTGTTGAGATGCTTGAAGCTTACATTCCAGGCTTTTCCAACATTGATTGtgttcAGGTCTGTGAAATGATGTTTAGCTTGGCCTCGAAATTAGCCTCAGCACGGAATGAAGAGTCTTTTGAGTTGAAGACAGAAGATGGGAATTGTTCCTTGACCCCTGCTATAGAGCAAAGAGTCCCCATGCAAAAGACACACAGCAACTCATCACATGTAGAGGGAGCCACAGCCAAGgtgAGCACTTCGGAGTGGGATGAACAGGAACAGCACCTTCTGGAGATGTTTCCTAAGTGTAGCGTGACCGAAGCCAGAAGTGCGTTATCTATTGCTAAAGGAGACATGGAGGAAGCAGTTCGACTCATCATTGAGGGAGATGTGCAGCTCAGTCCCACTCCTCCCCTCAGTGGAAGCCAAGGGAAGACTGTTTCTGCACAGGCTGATGAGAAGCttaaagcaaatattttagaaaaATACATGTTGGTAGATAGTGAGGAAGATAAGAAAATACACAGACCGTTTGTTCCAAAAGACGCTCCAAAGAAGTTGGTGCGTTACCATGGCAATCAAGTGGTGACTACCAAGGGAGAGCGCTACCATCTGGTCAAGAAAGATGAAAcggaagaaatgaaaaagacttATGTTAGCCTTAAGCCAGCACGCAAATACCGCTTTCATTGATGATGTCTGTACAATTACAcatctggttttaaattttatttatgactGGAGTGATTTGGCCTGTTTGTTAGCTTTTATGTGAGTTcatattttttacacttttgtctctttttctgaTTCAGACTCTATTCAATTCTAACTGCACTGACCGAATCAAATCTTTACAAAGATTTGTTTTGGGGAAAGGTTTTACTTTTTGTGGTATTTTTggtttaattgtgttttatgtACCAACACCagttctatttcacccctcctaacTGCCAAgggtggtttaaaaaaaaaaaaaa

Function

symbol description
cuedc2 Predicted to be located in cytoplasm and nucleus. Orthologous to human CUEDC2 (CUE domain containing 2).

NR:

description
CUE domain-containing protein 2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933724.2 True 1256 mRNA 0.42 9 15673435 15677449

Neighbor

gene id symbol gene type direction distance location
pax2a pax2,pax2a,LOC101463634,LOC107668824,LOC107588637,LOC107585307,LOC107716343 coding upstream 47589 15590118 ~ 15625846 (+)
chst3a LOC108262760,LOC108442959 coding upstream 185912 15480527 ~ 15487523 (+)
lrit1a LOC108262901,LOC108442250 coding upstream 222555 15447423 ~ 15450880 (+)
ogdhl ogdhl,LOC108263326,LOC108442924,LOC107707496,LOC107683740 coding upstream 260045 15388496 ~ 15413390 (+)
parga LOC108263327 coding upstream 287041 15355817 ~ 15386394 (+)
dnajb12a LOC108263659,LOC108443064 coding downstream 45432 15722881 ~ 15730701 (+)
spock2 spock2,LOC108262742,LOC108443083,LOC107668819,LOC107673954 coding downstream 69004 15746453 ~ 15773703 (+)
pald1b LOC108263458,LOC108443100 coding downstream 121779 15799228 ~ 15812772 (+)
rps24 rps24 coding downstream 143644 15821093 ~ 15827467 (+)
zmiz1a zmiz1,LOC108443181 coding downstream 195868 15873317 ~ 15986353 (+)
G46849 NA non-coding upstream 199565 15473201 ~ 15473870 (+)
G46833 NA non-coding upstream 253793 15419029 ~ 15419642 (+)
G46765 hps6 non-coding upstream 589125 15079813 ~ 15084310 (+)
G46713 NA non-coding upstream 658254 15014123 ~ 15015181 (+)
G46638 NA non-coding upstream 661446 14965906 ~ 15011989 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding downstream 33688 15711137 ~ 15715524 (+)
G47071 NA non-coding downstream 216132 15893581 ~ 15896079 (+)
G47084 NA non-coding downstream 355855 16033304 ~ 16035339 (+)
G47224 NA non-coding downstream 426387 16103836 ~ 16104050 (+)
G47265 c3h10orf71 non-coding downstream 515246 16192695 ~ 16203524 (+)
borcs7 borcs7 other upstream 699367 14972568 ~ 14974068 (+)
cgas NA other upstream 1305335 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 1386893 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 2172385 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 2639085 13032050 ~ 13034350 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 115957 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 393265 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 447178 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 557065 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 607673 16285122 ~ 16308898 (+)

Expression


Co-expression Network