Item | Value |
---|---|
gene id | pax2a |
gene name | pax2,pax2a,LOC101463634,LOC107668824,LOC107588637,LOC107585307,LOC107716343 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047597.1 |
NCBI id | CM018543.1 |
chromosome length | 33776708 |
location | 15590118 ~ 15625846 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
pax2a | Enables sequence-specific DNA binding activity. Involved in nervous system development. Acts upstream of or within several processes, including animal organ development; cilium assembly; and nervous system development. Located in nucleus. Is expressed in several structures, including immature eye; mesoderm; nervous system; neural keel; and pronephros. Used to study coloboma. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis 7 and renal coloboma syndrome. Orthologous to human PAX2 (paired box 2). |
pax2 | Enables DNA-binding transcription factor activity and cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including kidney development; negative regulation of cellular metabolic process; and positive regulation of epithelial cell proliferation. Located in centriolar satellite and nucleoplasm. Implicated in focal segmental glomerulosclerosis 7 and renal coloboma syndrome. Biomarker of nephroblastoma. |
description |
---|
paired box protein Pax-2-A isoform X5 |
id | name | namespace |
---|---|---|
GO:0001708 | cell fate specification | biological_process |
GO:0035775 | pronephric glomerulus morphogenesis | biological_process |
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0060113 | inner ear receptor cell differentiation | biological_process |
GO:0072114 | pronephros morphogenesis | biological_process |
GO:0021588 | cerebellum formation | biological_process |
GO:0009880 | embryonic pattern specification | biological_process |
GO:0043049 | otic placode formation | biological_process |
GO:0048596 | embryonic camera-type eye morphogenesis | biological_process |
GO:0030878 | thyroid gland development | biological_process |
GO:0007422 | peripheral nervous system development | biological_process |
GO:0030901 | midbrain development | biological_process |
GO:0030917 | midbrain-hindbrain boundary development | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0003677 | DNA binding | molecular_function |
id | description |
---|---|
K15608 | PAX2; paired box protein 2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026933736.2 | True | 3747 | mRNA | 0.45 | 12 | 15596662 | 15625846 |
XM_026933752.2 | False | 3735 | mRNA | 0.45 | 12 | 15596662 | 15625846 |
XM_026933760.2 | False | 3345 | mRNA | 0.45 | 13 | 15590118 | 15625846 |
XM_026933768.2 | False | 3702 | mRNA | 0.45 | 11 | 15596662 | 15625846 |
XM_026933777.2 | False | 3690 | mRNA | 0.45 | 11 | 15596662 | 15625846 |
XM_026933786.2 | False | 3537 | mRNA | 0.44 | 11 | 15596662 | 15625846 |
XM_026933796.2 | False | 2925 | mRNA | 0.43 | 11 | 15599526 | 15625846 |
XM_026933806.2 | False | 3525 | mRNA | 0.44 | 11 | 15596662 | 15625846 |
XM_026933815.2 | False | 3492 | mRNA | 0.44 | 10 | 15596662 | 15625846 |
XM_026933823.2 | False | 3480 | mRNA | 0.44 | 10 | 15596662 | 15625846 |
XM_026933832.2 | False | 3518 | mRNA | 0.44 | 11 | 15596662 | 15625846 |
XM_026933843.2 | False | 3473 | mRNA | 0.44 | 10 | 15596662 | 15625846 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
chst3a | LOC108262760,LOC108442959 | coding | upstream | 102595 | 15480527 ~ 15487523 (+) |
lrit1a | LOC108262901,LOC108442250 | coding | upstream | 139238 | 15447423 ~ 15450880 (+) |
ogdhl | ogdhl,LOC108263326,LOC108442924,LOC107707496,LOC107683740 | coding | upstream | 176728 | 15388496 ~ 15413390 (+) |
parga | LOC108263327 | coding | upstream | 203724 | 15355817 ~ 15386394 (+) |
myofl | LOC108263542,LOC108442891 | coding | upstream | 235705 | 15325232 ~ 15354413 (+) |
cuedc2 | cuedc2 | coding | downstream | 47589 | 15673435 ~ 15677449 (+) |
dnajb12a | LOC108263659,LOC108443064 | coding | downstream | 97035 | 15722881 ~ 15730701 (+) |
spock2 | spock2,LOC108262742,LOC108443083,LOC107668819,LOC107673954 | coding | downstream | 120607 | 15746453 ~ 15773703 (+) |
pald1b | LOC108263458,LOC108443100 | coding | downstream | 173382 | 15799228 ~ 15812772 (+) |
rps24 | rps24 | coding | downstream | 195247 | 15821093 ~ 15827467 (+) |
G46849 | NA | non-coding | upstream | 116248 | 15473201 ~ 15473870 (+) |
G46833 | NA | non-coding | upstream | 170476 | 15419029 ~ 15419642 (+) |
G46765 | hps6 | non-coding | upstream | 505808 | 15079813 ~ 15084310 (+) |
G46713 | NA | non-coding | upstream | 574937 | 15014123 ~ 15015181 (+) |
G46638 | NA | non-coding | upstream | 578129 | 14965906 ~ 15011989 (+) |
G47043 | LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 | non-coding | downstream | 85291 | 15711137 ~ 15715524 (+) |
G47071 | NA | non-coding | downstream | 267735 | 15893581 ~ 15896079 (+) |
G47084 | NA | non-coding | downstream | 407458 | 16033304 ~ 16035339 (+) |
G47224 | NA | non-coding | downstream | 477990 | 16103836 ~ 16104050 (+) |
G47265 | c3h10orf71 | non-coding | downstream | 566849 | 16192695 ~ 16203524 (+) |
borcs7 | borcs7 | other | upstream | 616050 | 14972568 ~ 14974068 (+) |
cgas | NA | other | upstream | 1222018 | 14361367 ~ 14368100 (+) |
slc24a3 | slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 | other | upstream | 1303576 | 14213369 ~ 14286542 (+) |
pcbd1 | pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 | other | upstream | 2089068 | 13498048 ~ 13501050 (+) |
si:ch211-223p8.8 | si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 | other | upstream | 2555768 | 13032050 ~ 13034350 (+) |
eif4ebp2 | eif4ebp2,LOC107564345,LOC107668794,LOC107716353 | other | downstream | 167560 | 15793406 ~ 15797204 (+) |
cxcl18a.1 | LOC108263637 | other | downstream | 444868 | 16070714 ~ 16075650 (+) |
cxcl12a | cxcl12 | other | downstream | 498781 | 16124627 ~ 16134002 (+) |
lrrc18a | lrrc18,LOC108263378 | other | downstream | 608668 | 16234514 ~ 16237542 (+) |
arhgap22 | arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 | other | downstream | 659276 | 16285122 ~ 16308898 (+) |