ap5s1 (ap5s1)


Basic Information

Item Value
gene id ap5s1
gene name ap5s1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19412671 ~ 19426321 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933896.2
TTAACATGTTGTATAGTTCGACGCTTGTCCCAGGTCACATGACTAAACCcggaaatgtttttgtgtttaacgGTGGAGTGATCAGACAGCCTtcatttaatagattttttttacaataagaCGTGATTTTCTGACAGTTCCAAAAGTGTGCTGGAATAGAAATGTAGGAAAAGTGTTCCTGTCCTGTTCTAGTTTTAAAGCAGTCATGGTGGTGTGCTTTCTCATCCACACCGTGTGTCCGGTGAGCGCGCTCTGTGCCGGTGAGAGCCGGGTTCTGTACTCTCGCCTGTTCGGCCCGGAGGAACCCACACTGCTGCACCGAACCGCCGAGCAGCAGCGACTGGCCCACAAGGAGACTCTCGGGCTTGTGGCCAGgcAGGTGCGCAGAGCTGTGTCTGCAAGCCGGGAGGCGTCAGGCAGAGTGCTTGTGGAGGCTGGGCTCGGAGAAGAGGCCACGGCTTTGAGTGAGGCTGAATATGGTGTGTTGTCTTTGGCTCACGGGGAGCCATTTGCAGGGCGCTGTGTTGTTCTGTGGCTTGGGGTTCAGGCTCTGGCCTTCACTCTGGTGTGTCAGCCACATGAGAACCTGCTGCTTGCCGAGGGAACTCTGCGGAACCTGACACGCCACTGCTTGGAGGAATTGCGTCTGCTTGGACCTGGAAGTGAGGTGCTGTTAAAAAGTGACCGCGTGGATGCAATGCTTCAGAGGCTTCTTCCCCATGGGCAGCTCCTCTTCCATAACCATCGCTTTACACATACAATGGACAAAGAGCTATCCAGCTACATGGGCAAATAAAACATCTGGATATGTGCTGCAAGTTTTCAGAGAAGCTCTTCAGTTCAGTTTAAAGCCAGAAAGAAATTGACTGAAAGTTTTACATCTCATGGAACCACACATGCCTAACTGGTTGCCAGTGGTGTTATTTATGTGCTTATTTCTATACCTTTAAGACAGCAATATCGGCCATGTCAAGGAGAGAGTGTTACTGAGTGTGGCAAATTCATATCTGAGGcaaatggaagtgtgtgtgtgtgtgtgtgtaagaatgctGTGGGAGTTACATGTTGGAACTGTTATAATCTTCTATATTCCCATAAAGCACACCTGTGACACCTCATATCAAAAAATGAGGGTATGTTAGTtcacaatataataaatgtgataATGAA

Function

symbol description
ap5s1 Predicted to be involved in endosomal transport. Predicted to act upstream of or within double-strand break repair via homologous recombination. Predicted to be part of AP-type membrane coat adaptor complex. Predicted to be active in cytosol; late endosome; and lysosome. Orthologous to human AP5S1 (adaptor related protein complex 5 subunit sigma 1).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K19024 AP5S1; AP-5 complex subunit sigma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933896.2 True 1170 mRNA 0.48 4 19412671 19426321

Neighbor

gene id symbol gene type direction distance location
cdc25b cdc25b,LOC108417292,LOC104960468 coding upstream 2580 19402932 ~ 19410091 (+)
rab11fip5a rab11fip5,LOC108263817 coding upstream 73034 19318825 ~ 19339637 (+)
mrps26 mrps26,LOC107678578 coding upstream 158317 19252850 ~ 19254354 (+)
si:dkey-33c12.3 LOC108263340 coding upstream 162249 19247018 ~ 19250422 (+)
si:dkey-33c12.4 LOC108263338 coding upstream 168798 19237356 ~ 19243873 (+)
gfra4a gfra4,gfra4a,LOC107693311,LOC107568637,LOC107695017,LOC107733662 coding downstream 90000 19516321 ~ 19604187 (+)
ky LOC108263466 coding downstream 348426 19774747 ~ 19786571 (+)
LOC117596472 NA coding downstream 494834 19921155 ~ 19934237 (+)
fgfr3 fgfr3,LOC108263592 coding downstream 506734 19933055 ~ 19970306 (+)
nsd2 whsc1,LOC105909588 coding downstream 616388 20042709 ~ 20064115 (+)
G49214 NA non-coding upstream 11788 19400651 ~ 19400883 (+)
G49157 NA non-coding upstream 117378 19295082 ~ 19295293 (+)
G49146 loxl3,LOC108263239,LOC102779520 non-coding upstream 145082 19266545 ~ 19267589 (+)
G49104 dcaf10,LOC107582526,LOC107733687,LOC107708468 non-coding upstream 208984 19202230 ~ 19203687 (+)
LOC117596836 LOC107678534,LOC108263526,LOC107570529 non-coding upstream 397097 19014191 ~ 19015574 (+)
G49316 NA non-coding downstream 188396 19614717 ~ 19617317 (+)
G49522 NA non-coding downstream 486500 19912821 ~ 19954595 (+)
G49517 NA non-coding downstream 506721 19933042 ~ 19943075 (+)
G49518 NA non-coding downstream 546266 19972587 ~ 19999686 (+)
G49630 NA non-coding downstream 694727 20121048 ~ 20183193 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 56573 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 150583 19256064 ~ 19262088 (+)
grxcr1b LOC108263619 other upstream 195395 19214207 ~ 19217276 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 376027 19026968 ~ 19036644 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other upstream 500476 18902438 ~ 18912195 (+)
pprc1 LOC108263826,LOC108421584 other downstream 956025 20382346 ~ 20392601 (+)
G49862 NA other downstream 1148652 20574973 ~ 20575479 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other downstream 1599412 21025733 ~ 21118964 (+)
wu:fj16a03 NA other downstream 2594001 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 3058989 22485310 ~ 22552752 (+)

Expression


Co-expression Network