zgc:154142 (LOC108262754)


Basic Information

Item Value
gene id zgc:154142
gene name LOC108262754
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6418262 ~ 6463985 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934053.2
AAACATGGGCTGGTTATCTGGGAAATCAGCATTACGTTGGCGGTGTTGGTCCACCTGAAGACGACTCGTGGGTGGAAAAGCAAGAAGAGCAAGATGCCGTTGAGGATTGGCCTGACCTCCCTGGAGAAGAGCCTCATTCTTCTGTTTGTGGCCATGACTGCAGCCTGCATTGGCCTGGTTGTGGTTTATGTCACCGAGGCCAACAGCTCCACTGGGGGAAATGAAGGAGAGGTGGTGTTGGATTCAGAATGTGGGACTCCGGCGCAGCTGAATGGCGAGATGGGGGAGTTCAGCAGCGGAAATTACCCCAGCAGCTACGACAACGGCAAGAGCTGCAGCTGGACCATCACTGTGGACAGCAAAAAGGTGATCGTTTTGTGGTTCCAAGACTTCTCTCTGGAGGACTCAGGCACATGCAGCGCAGATGCCCTCACACTCCAGGATGAGCTGGGGATCATTGgGAAATTCTGCGGTTATTCCAAGCCTAAGCCGATAGTGTCACTGGGAAGCACTTTGATGGTGCATTTCGACACAAacgacagatacacagacaaaGGATTCAAAGCTGTGTACCGTGCTGTGGACCCTAATACAGTTAatgATATTGTTGGAGCTGGTGGCATTCTGCAAGGTGACCATGGGGAGCTGATGACCCCCGGCTTCCCAGAGAAGAACTATGAGAACGGTGTGGTGTACCAGTGGAGGATAATAGTCCCTCATGGAGAGAAGGTTCGACTCACGTTCCTGGCCTTTGACATGGTCCCAGACTCCTGCACTGACTATGTAGATGTCTTCGAAGGTCGTTCAGATGGCGTCAGTGCTCCCAAACTTGGTCGCTTCTGTGGGAACAAGGTGCCTAAACCAGTGCTGTCCAGTAGCAATGAAATGGTGGTGCGGTTTAAAAGCGATTCTAACCACAATGCTAAGGGGTTCAGTGCAGTTTACACTGTGGCTAGTGCTCCACCCATTACAACTACCACCACCAAACCTAacaccacaaccaccaccaaACCaaccacaaccaccaccactAGGCCATCCACCACTCCTGAACCAACTGATTCAGGTTGCGGCTCTCAGGGGAATCTGTTCGGTCGGAAAGGCGAGATCCACTCTCGGGCTTTTCCCAATGCCTATCCTGCAAATCTGCGGTGTTCCTGGAGCATAACCGTGCCTGAGGGCTTTCTGATCAAACTGCATATCACTGATTTAGCCATAGCGGGTGAAGCAGGACAGTGCAATGAGGACAAACTCACAGTCACTGACAGCCAGCAGTCACTGGgcaTACACTGTGGCTTCATCCTTCCTCCTGTGCTCGTCAGTGTCAGTAACAAGATTGCTGTGAATTTCCTGTCTGACGGCCGGCTAGCTGACCGTGGTTTCTCAGCCAAGTGGGAGGCTGTGTACGCAGAGGACATAGCTGAAATCCAAGGCTGTGGTGGTTTCTCTAGTGAGGAGACCGGAGTCATCAAGTCTGACAACTGGCCCATGAACTACGCTCCCAACAGAGAGTGTATGTGGAGGGTGCAGGTGCCCGAGGGCAAAACCATCACACTGACATTCACCCACTTTGACTTGGAGGCAGTGGCCAACTTGTTCAGCCCCTGCCTTGACAACGTGGTCATTTACGATGGAGCACATGGCACCGCTAAGAAATATGGTCCTTACTGTGGTGACAAACTTCCCCCCGTGATCAAGACGACAGGAAATGAGCTGGTGATGCGTTTCCATACTGACCTCTTCAAGGAGGAGAAAGGATTCAGAGCATACTGGAGCACAGATCCCACACTGCCTGCTCCCACTGAAGCGCCTGTACCACCAAACCCATGGGACGATATCCCTATTGACTGGCCGGAGACATGCGGAAGGCCGAAGGTTCCTCCCATGGTGAACACTCGCATAGTGAATGGCGAACAGGCCAAACCTCACTCCTGGCCCTGGCAAGTGTCCATGCAGgtttggCCCGAATCTTTTCCCACGCCTACGTTCTTCCACACATGTGGTGGCACTCTCATCCATAAGAATTGGGTTTTGACTGCTGCACACTGCTTCATCAGGTACGCAGATGAGCTGCAGAGATGGCAGATGTGCCTGGGCAAACACAACCTGACCCAGACAGAGCCAGGCGAGCAGTGCTACAGAGTTCTAGGCATCTATCGCCACGAGAGCTTCAAGTATCCCACAGTGCCCAGTGTGGAGTTTGACATCGCCCTGGTGCGGCTGGACGGAGAGGTCACCCCTACTGAGCACATCGACTTCGCCTGCATGCCCTCAGTCGAGGAGATGCTTCCAGGTGGAAAGAAATGCTACGCTACAGGCTGGGGTGATGAAACAGGCAACTCAATGGCTCCTAAAGTGGCAGAGACTCTGAACCAGGTCGCTCTTCCTGTGGTTCCCTTTGATACCTGCAAACGCATGGACTACTGGTGGTTCCAGGTCAAGCCGTCGATGATCTGCTGTGGATACACTCTCCCCGACGAGCTCAAGtctgtgtgtcagGGAGACTCGGGTGGTCCCCTCGTGTGTCAGGACAGCCCCTCGGCCCCCTGGGAAGTCCACGGTATCACCAGCTTCGGGCCTATCGGCTGCATCATGGACAAAAAGCCCAGTGTGTTCACTCGCTCGTCTGCCTACATGTCCTGGATCGAGAACATCATCCGCAAGGATATCTACCACCTCACCACTTCTGGTTGTGGTGGGCCGATGGACCAGACTGGCACTGCAGGAGTGTTGGCCTCAATGAATCACCCTGAGAGTTATGAAAGCGGTGCCCAGTGTCGCTGGAACATCCGTGTACCTGCAGGCAAACGCGTGCACCTTCACTTCGATTCGTTCTCACTAGAGGAGAGCCAGATGTGCCTCAGCGACAGCGTCTCCATCTCAGACCACCTCAGCCCTCTGGgTACACACTGCAGTGCGTATCCTCCAGCGGACATGGTTTCTGCCGGGGACACGCTAACCGTCCGCTTTTCCTCCAATAACAGAGTGGTGGATACGGGCTTCAGGGCCACTTGGAAAGCCGTGAACCCAACTGATATCAACACTGGCTGTGGTGGAGAGTTCACCACCCAGCAGGGGGAGCTAGTCTCCCCAAACTGGCCCAATAAGTATCCGAACCAGATTGTCTGCACATGGAGCATCTCCAGTCCATCAGCCAAGAGCCTCCACATCGTCTTCACACACTTTGAGCTGCAAGCAGCTAACATCCTGGGCAAGTGTGTGGACTATGTGGAGGTGTTTGATGCAACCGGGAAGTCACAAGGTCAATTCTGTGGATTTGCACTACCCAAGCTGACCATCGCTGGAGACAAAGCCACTGTGCGCTTCCTCACCAATGACGCACGCCAAGAGAAGGGTTTCCGTGGTTACTGGACCACAGATCCGAGTGTGTTTCCCACCCTGCCACCTCTGCCGCCCAACCCGTGGGACGACGTGAAGATTGACTGGCCTGTTAAATGTGGGACTCCTGCAGTGGCTCCAGTTACCCCTGTGATGAGGGTTGTGAATGGAATGGAGGCTAAACCTCATTCCTGGCCATGGCAAGTGTCTATGCAGGTCAAACAGCTTCCTTTTATGCCTTTCCAACATGTGTGTGGTGGCTCACTGATCCATGAGGAATGGGTTCTGACTGCTGCCCACTGTTTCACACaACTTTCAGTTCCTACGTCATGGCAGATGTGTTTTGGGAAACACCACATGAATGCCAGTATGGACGGCCCCACAGAGGTGTGCGTTCCTGTGGTTGCTATCATCTCGCACAAGGATTTCGTCTACCCCCAGATCAATGACCTCGCCAATGACATTGCTCTGGTACGACTGGCCAAGCCTGTGTCCATGACTCGAGAGATCAGCCCTGTATGTCTGCCTAAACCCGAGTCCCTAATGCCTGCTGGCCACTTCTGCTACGTCACCGGCTGGGGAGATGAAAAAGGCAGTACAGTTCCTGTAGTGGCTAAGAAGCTGAACCAGGCTCCTCTTCCTATTGTCTCCTTTGAGACGTGCAGTAAACCAAACTATTGGTGGGATAGTGTGCGGCCTTCGATGGTCTGTGCTGGCTATGAGTCACCTGATGAGCTCAAATCTGCCTGCCAGGGTGACTCAGGTGGGCCATTCGTGTGCAAATCAGCCAACTCTGGCTCCCTTTGGGAGGTGCATGGCGTGGTGAGCTTCGGTCCTCGTGGCTGCATTGTGGACAAAAAGCCGTCCGTGTTCACTCGAGTCTCAGCCTTCAACCACTGGATAGAAGACAACATCAAGCGATACGTCTATGAAAACACTCTAGCTGCTTAAGTCTGAGCAAGAAGACCTGAAATAGACTCTCCATGGCTTTCTCACCTTTACTCTGCacctttttttgcattttctttaccACAAGCCCTTCTTGGACAGTGGGGGTGGAACCAAGAACCAACTAGAcatagaaagaaagatgaagatGTTATTACAATCTCAGTGCAGTGGTTTATTTAATCACTCAAGTCATGATGCTGAATTTAACAAGAGAGTCAATGTAGGAAGTAGATTAACTAAcaaaatttaacaaagaaaagttactaaaattcttttcttaaaattactaaaattcctgttttttttctcacacacaaccacaaaaGCCTCATATAATAATCAGTATGCTATTATAGTTATATGATTCAATTATATCATCAGTATGTCAAGTTCTTCctcatgcatatacagtataaaatatatttcactgtcattcatttaattacaattttgctatttaaatttttttataaataattatttgtaattatttatttaattactagTATTActattgctattatttattctaATTAACTGACAGTTTGCCAATATGTCAAAACATGTCTTATAATAGAAGCATAATGcttcaggaaaaataaaataacctcTCATTTTTATAAGTT

Function

NR:

description
PREDICTED: ovochymase-2-like isoform X2

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K01362 OVCH; ovochymase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934053.2 True 4916 mRNA 0.50 25 6418262 6463985

Neighbor

gene id symbol gene type direction distance location
gprin3 LOC108262861 coding upstream 12659 6398894 ~ 6405603 (+)
ucp1 ucp1,LOC107703842 coding upstream 34802 6375569 ~ 6383460 (+)
tbc1d9 tbc1d9,LOC107594295,LOC107598515 coding upstream 47234 6326860 ~ 6371028 (+)
rnf150a rnf150,LOC107729769,LOC102313262,LOC108251603,LOC107598546 coding upstream 122785 6265930 ~ 6295477 (+)
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding upstream 561032 5843566 ~ 5857230 (+)
fam13a fam13a coding downstream 2081 6466066 ~ 6546055 (+)
ppm1k ppm1k,LOC108262962,LOC107706815,LOC107675910,LOC107594437,LOC107729359,LOC107684283 coding downstream 198393 6662378 ~ 6680286 (+)
abcg2d LOC108261237,LOC108262954,LOC108262959,LOC108441148 coding downstream 217156 6681141 ~ 6699519 (+)
papss1 papss1 coding downstream 254866 6718851 ~ 6748064 (+)
dkk2 dkk2 coding downstream 315421 6779406 ~ 6795508 (+)
G41345 NA non-coding upstream 114157 6303897 ~ 6304105 (+)
G41331 NA non-coding upstream 154959 6260605 ~ 6263303 (+)
LOC117596795 NA non-coding upstream 155831 6239367 ~ 6262431 (+)
G41299 NA non-coding upstream 541840 5876148 ~ 5876422 (+)
G41232 NA non-coding upstream 598815 5818548 ~ 5819447 (+)
G41600 NA non-coding downstream 55074 6519059 ~ 6552115 (+)
G41651 NA non-coding downstream 120870 6584855 ~ 6585448 (+)
G41653 herc3,LOC108263070,LOC108441136,LOC108441137,LOC108262885 non-coding downstream 134718 6598703 ~ 6598967 (+)
G41654 NA non-coding downstream 137927 6601912 ~ 6602163 (+)
G41752 pkd2 non-coding downstream 198297 6662282 ~ 6702806 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 189577 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 1060402 5263582 ~ 5357860 (+)
G41047 NA other upstream 1076512 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 1646658 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 2583636 3831867 ~ 3834626 (+)
G42075 NA other downstream 739965 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 1156560 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 1185213 7649198 ~ 7671410 (+)
G42685 NA other downstream 2001762 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 2005639 8469624 ~ 8469881 (+)

Expression


Co-expression Network