gprin3 (LOC108262861)


Basic Information

Item Value
gene id gprin3
gene name LOC108262861
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6398894 ~ 6405603 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934248.2
CATTAGCATATTCTCCGCTCTGGAGGGCGTGGCTTCGCGCCGCTGCTGCCGTGCGGCTGAAATCCTTCCATTGATATTCAGCCCAGTGTCCTATATATgagaagagcagaaaaaaacccacagcgcAGTGTGCAACCCTGAGCATGATGTGAGACTGAGACAAAGACAAGAGCAGGATATCCACCTTGATTTTGGACTAACAACAAAGGAAGCAATAAAACTGGATTCAGAATGGGAACAGTTCCTAACCCCAAACGGACTGTTACTGTTCAAATGGTACCTCGACTATCTGGTACAGATACTTTGGGCAACAAGGACACAAATGCAATCTGTCTCCAAGACTCCGGTTTAAACCTGACAAAGGATCTTGCTTCTacgcaaaaaacaaaaccagatCAGGATAATATGCAACATAAGTCTGCAAGTAAAGAGAACCTGTTGGAAGGGACATCCAACTCTCCTTCTTCTAACAGTGAGGATTATAGAAAACCTGATCCCCAGGAACCTCATGCAAACACCAAGATGGAAAACATCAGTGTAATTTCAAAGTCGTTACCAACCATTTCTGCCAAAAGCAAGGATATTTGTTCAAGTAGCCCATCATGTGTAGAAACACTGCCTCAAGATGATAAGGAGAGAAATGACAGTCATGCTAAACAAGGAAACGAAGAAGGGCAGAGTACGGAGAAACTACAGAGTAGAGCATCGGCATCTGAGGAACCCACAGCACACAGTCAAAAGCCATGTCACACATGTGATCCTAAGCTCAGAGACTTACCTCCCAGCAACAGGAATGCAAACAAGGACACTTCCCATTTACATGAACTTAAAGAATCGAGTTGCACCATTAGTTCAGATCTAGCTCTGATAACCAGCATGGATGAGACGAATCAACCACATCCAGAATCAACTAAGAAATTGCAAGGAGCGACTTGCCCACAAGGCCTTACAACAGAGGTTTCCAAATCAGTTCCTAAACCAGCAGAGACCTCTCAGCCAGCAAACAGCAATGAAAAACCTGAGGCAGATCTTACTATATTACAAGCTAACAAAAAACAGTCCACACCTCTTAAAGAAAAAGAGTCTTGCCCCAAATCTGAATATGATGCAAATGACGACAAACCCCACCATAATGTCACAATAAACAGCACTTCTCAACACTCCCTGGACATCTCCTTAAGTCACTCCTTTCATGCTGAAGTGACTGATGAGGCAGTTCAAACACAAGGATCTGCTTTGGAGGAAAATAAGATGAAACACTGTAAGCTGTACCGTGAGGCCTCCACCATGACATCAGCAGCAGACTGTGGCACCTCCCCCTGCAAACAGCACCAGGATGTAGAGGTGCAGGCTGTGGCTTTAGTCTGCACTCGTGCTGTTGAAACAAGTCCCAGCCTTTTTACGTACCAACCCAAACGGGTGTCTATTTGTCTTCAAATGGAAGAAATGGAGAGCCTTGCAATGGTATATCATAAGGACAATGCAGAGGCACCAATTATAATGGAAACATCTGGTAGTTCATGTGGTCCATCTATCACAACCTTGTCAGGGGGACTTCTTCAATCTGGAGGCGTTTTGGTGCACACAGATGGTGTTTTACAACACGAGACCAGGCTTGGAGCCAAGCCCAAGGAGCCTGGGCCACCAATTTACAATGCCCCAAAAGGATATTCACCTCTTCAACCAGTTTATCAGATCAATATCGAGACATGCAATCAAAATAAACCATCAGCTGAAGCTAGTTGTCAAAGTCAGAGCTACAAAGTCTCCCCTGTGCTTTCTGGTTTACATTCTGTGAAACAGGACTCCAAGGGGAAGGGCTTTGGTGAGATATCGACCACAACAACCGATCAGGCCTGTCAAGCTCTGTCTGTAACAAGTCCTCAGTCAGAACAACCTGCCAGGCCTCCTGCTGCTAAATCCCCTATTTCACAGTCAAAGCCCTCTCCACATGTGGTCGGTCCTCGTACAGCAGCTAATGAGACCAAAACAGAGGCTTCTGCCCCTCCATCAAGCTCCACTTCAAAGCACAAAATAAAGAGAGAGCAGCTGGTTGACAAATCCATAGCCAAGTCAGCAAAGCAATGTTCCAAGTTGGAGCCAGAGAGCAATAAGAAGGAGGATGAGAAGGCAGCCAAGCCGACCAAGAAGAGCGTTCACGACGTGGTGTGGGATGAGCAGGGCATGACGTGGGAGGTGTACGGTGCCTCGCTGGATCCAGAGTCACTCGGTTTCGCTATCCAGAGTCACCTCCAGTGCAAAATCAAAGAGCATGAGAAGAAGATCATGGCTCAGACAGTGCTCAGGAAATCCATATCAGGTGCAGTGTCTGACTCACCCTCAGCCAGAAAGAGCAAGCGAAGGCAGGCAAATGTCTTCAGATCCATGTTCCAAAATGTCAGACGGCCCAACTGTTGTGTACGTCCACCCCCCTCGGCAGTGCTGGAGTGAGAACTGCTGAGTAATCCTGGTCCGATGATTGCCTGGTACAGAATCTTCCTTGAGGTTTTCTAGTGCAAAGCATGACAGGACTATTCCCGGTTCATGATGCAGAATGTgcggcatttaaaaaaattggtgagtgtgtaagtggaggcagtaaacattattattagaggaagtatttttaaaaattaaaaaatatgccGAGAGTAAAGTTCTAACAGTATTTAAAGTGAAATggcaataatgataataatataatataatgaagcTAATGGAACATATTTAGTTATATGCATGTATATTGGTTCAGATGGCTGTCTATTACCCTCCCATTGTGGGATCTGCAGTTATACATTGCACTGAATATCAGATGTAAGCTTACTACTGTTACTTTTTACAAAACCTTGTGCAGTTGAATTTAAAATCTTATTGTACTCTGAGTTTGGTAAAtaattgttttgcatttttgaagGTGGGTTGGCCCCTATTATTTATGATATTCATATTTATGAGTTTGTTTAATCGTTAAGCTTTGCAAATCCAAATAGGTTGATAATTAATGAAGATAAAGtgcaagaacaacaaaaaaaaaatctaaaatcagGTGTGCTTGTTGTCATATGTATAGTAAAGTGCTGGTGTGCCATAGATACCATATTGAGCAGCAATGTTACCctgattttatattaaaatcatttagaGAATACCATTCACTCTCAGTTTACTCTGTTCTTCATTACACAGTGCATTTGCCTTAAGTATGATTTTTTGTAGTTATTTTGGATATTATCTGCAGTTACATACCGTGATGAGAAGGTCATGTTCGTGGGTACGTGTATGTAAAACACTGAAAGGCAGTTCTGTCAGTTTGCTCAGCCATGTGACTACATTAACTGCTGACGCATCATATGACTTTTCTTATTCCGTTGCTTTGCCATAACTGTAACCATTTAGTGATGTGACTGATGGTGGCATTTCAGCCACAGATGGAAGCCGTATCACCATGAATCATATCACAAATCTATTTTTGGAGGTCTTGACCTCTACAGAGTGAATGATATTGAATTTGGCAGAAGggcttttcttgttttctctctctttctctctctttctttaataTTCTGTCCCTCTATGCCACAACTCCTGCAGCTTCATTCTCTTTCATTTCAACACATCTCATCTCTTAATTAGCTCCTGTTTCAATATTTAATGTCCTCCCCATCGCTGGCACAGTATCGTTGCAACCATTTAAAGGCTCTGATTAGATCTTCACCATAGGCCCTGTTTTAACTCTGGAAGAGATGAATGCTGGCGACGCAGCTCGCCAACTACAGAGCTCTTCACAAAATTCCAGCTGGCTTTTGTGATCTTCATTTCCGTGATGCAAGGTTTGAAATTTGGAGCCTACAGGATCATATAAGAGACTGTCTGTCAAGGTATTAACAGAAAGTTAAAAGAGAGCTGGTCTATTCAGTGAGGGTGTTTAAGAATGTCTGAAGTGAGGACGTGTATGTATCAGCACCATGAGGCGAATTCCAGCCATAGGATTTGATAAGATGACACGTGATAAAATGCATTTGGTAATAAAATGGGTTCACTCACATTGAGAGATCTGGTGCAATCAGTGTGTTTGATGTTGATTTGGAGGGCGTTTCTGTGCAAACCCCAGGAGGCTGTTTGATGTTAGATATGTGGTGTGAAAAATGTACATGATAACCTTAACTCAATGTGACAGTTTTTGGCATATCACAGTATCTGCTAATGATGTTTCATTTTCAAAGAGGATGACATTAAATACTAACACTACAGTGGCAGTGCAGGTTTTAGATTatctgaaaatgaatcatttttttttaaacgacttgttaagaagaaaaacaactgCCTTTTCATGTGATATATTTGTTAAAAAGTAGGCTAC

Function

NR:

description
PREDICTED: G protein-regulated inducer of neurite outgrowth 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934248.2 True 4366 mRNA 0.42 2 6398894 6405603

Neighbor

gene id symbol gene type direction distance location
ucp1 ucp1,LOC107703842 coding upstream 15434 6375569 ~ 6383460 (+)
tbc1d9 tbc1d9,LOC107594295,LOC107598515 coding upstream 27866 6326860 ~ 6371028 (+)
rnf150a rnf150,LOC107729769,LOC102313262,LOC108251603,LOC107598546 coding upstream 103417 6265930 ~ 6295477 (+)
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding upstream 541664 5843566 ~ 5857230 (+)
LOC113542482 NA coding upstream 647862 5733447 ~ 5751032 (+)
zgc:154142 LOC108262754 coding downstream 12659 6418262 ~ 6463985 (+)
fam13a fam13a coding downstream 60463 6466066 ~ 6546055 (+)
ppm1k ppm1k,LOC108262962,LOC107706815,LOC107675910,LOC107594437,LOC107729359,LOC107684283 coding downstream 256775 6662378 ~ 6680286 (+)
abcg2d LOC108261237,LOC108262954,LOC108262959,LOC108441148 coding downstream 275538 6681141 ~ 6699519 (+)
papss1 papss1 coding downstream 313248 6718851 ~ 6748064 (+)
G41345 NA non-coding upstream 94789 6303897 ~ 6304105 (+)
G41331 NA non-coding upstream 135591 6260605 ~ 6263303 (+)
LOC117596795 NA non-coding upstream 136463 6239367 ~ 6262431 (+)
G41299 NA non-coding upstream 522472 5876148 ~ 5876422 (+)
G41232 NA non-coding upstream 579447 5818548 ~ 5819447 (+)
G41600 NA non-coding downstream 113456 6519059 ~ 6552115 (+)
G41651 NA non-coding downstream 179252 6584855 ~ 6585448 (+)
G41653 herc3,LOC108263070,LOC108441136,LOC108441137,LOC108262885 non-coding downstream 193100 6598703 ~ 6598967 (+)
G41654 NA non-coding downstream 196309 6601912 ~ 6602163 (+)
G41752 pkd2 non-coding downstream 256679 6662282 ~ 6702806 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 170209 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 1041034 5263582 ~ 5357860 (+)
G41047 NA other upstream 1057144 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 1627290 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 2564268 3831867 ~ 3834626 (+)
G42075 NA other downstream 798347 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 1214942 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 1243595 7649198 ~ 7671410 (+)
G42685 NA other downstream 2060144 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 2064021 8469624 ~ 8469881 (+)

Expression


Co-expression Network