prop1 (LOC108263276)


Basic Information

Item Value
gene id prop1
gene name LOC108263276
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21517786 ~ 21522535 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934272.2
tttcaaactaagAAAATAATGTCCttaatccagtgtgcataagtTGCATAAATTTGATTTCCAGTCAGTCAGAATCAAACATCTAGCCAAAAGGGTAACAAAAGCTGTAgtatgtattttatatgtagGGAGGAAGTGCAGTGAGGGAGAGACTCCAATAACTGCAGTAAAACTATTAGGTTCACTTTCCTTACCAATAAAGTCTGAGATAAAAATCTATCACAAACTGGAGATATACCATCGTGTATTTTTGATAATCTAGTTTTAGTGAAATAGGCACAATACAAAAGTTTGCACTTAATAAGGGAATGCCTTGTACAGATAGAAGaattgtatgtgtttgttttcttggcttttgttgttccactgagtcagagtcactTGATGATGTTGAGGAACTAGTGGagttagatggatggagaaatttgtccatttttgttGCTGAACTATGTTCATGCAGTGTGTCAGGATAGtggaaaaagactaaaatagcatgtacagtctttttttaaatgtggcatGTTTGAATGGGACTTccagaaacatttcaaaacagtGGTGCGCATATTCTGCCTTCATAGTTAGTGCGATATTTGTAACATTAATTTGTAAGATTGTAAAATGAGTAAAACAAAGGAGGTGAGTTTCTCTCACgactttatttgtaaatcagaTGATCTCACGTTGATTGCAGCCCCTAGTTAGTGGACCCTTGGTTAGTGGGTGTTTTAAACTGATTAATATTTCCTGTTCCTCTTGATGTCTTATTTCTGGCAGTTTTTTTGTGCCACTTCAGCACAACCTACACACAGTAATAAATCTGACAAATATTGTTCTTTTACTATTTGTtctattacaaaaaataaattattgcatTATCTGTAAAAGAGGCAAATATTTCTTCCAGTATTtggttaaaatgttattatgcaTGGTATTAGTTGGACCAGGAGAGCAGGTAATGAGGGGTGTGATTGCTGAATGATGTCACTGAGGGTGGTCATGTAAAAGCTCAGGTAAGCCCACCGTGTCTCTCCTCATACCTGAAACCCTCAGAGAAGACCAGCTATGGAACATGCCAAGCCTCATCCACAGTTCTCCGACATGTACTCTGAAGTCATTGTCAGCTCAAGCGCAGGTaagaattatttattacagtgtttGAATGCGACATTTTAAAAGTGTGCTTTCAAACTTTCTCCTAAGGCTTAAACTCAAACTCAAATCCACTTCTGGCCCTGGGTGTACTTCACATGACTTTGACCCACCTTCGTTTCTCTTAGTATGTATGAATATATTCCATGATACCATTGTACACTAATGGATAAATGAATGTGATGAAAGATTTGTCTTTATATGAGAGATCTTACCATTTTCGgtgtatatacagtttatatttatatgaatgatATGAATATATGATGCTATATGTTTATATGATATTTATCCATTCAACCACTAATATTAGTTAGACAAAACTTTTAAACAAAGCAATCAGAAAGATAATTAAACTTAAATTAGATTAAGTCCAGTAGTAAGTCCAGTATCTACCTCCCATACTGACATTGTGAGCAGAAACCATTGCATCCAAGTCCTGCGATTTGACAAAttagtcacttttttttttagcttttgttCACTTAATCTTGTCTCAATCCTTTGGCCTctggtatctctctctctcacgatATTGAGTTTAAGCAGCAAAGCCTACAGCCTATTGGGTTCCTGGCCTTTTGTTAGGAAACCTTAATGCTCTTAAACCCTTTCCCCTTCAGAGAACTGCCATTTGTGAGATGTGTTTTTGCAAATCAAATTCCTCCAAAGTTGATcaatctttttccacctttaaccAGAGAGAAATGtgtacacagattttttttgtctttcaggaACATCTGTGTCACAAAGGTTCAACTTTCcaaatttttcttcttcactttGTTGAATGCAGATGTTCAGGGTCCTCCAAAGAAGGAGTCCACGGGGCCTGAAAGCAGTGGGGATGTGGCAGGTCGAGTTAGACTCCACCCGTCTCCATCTCGCAGGAGACATCGAACCACCTTCAGCCATGAACAGCTGGAGCAGCTGGAGTTAGCTTTCAGACACAACCACTACCCTGACATCTACTGCCGAGAGGAGCTGGCTCAGCAAACTAAACTCAATGAGGCCCGCATCCAGGTTTGGTTCCAGAACCGTCGTGCCAAGCAAAGGAAACAGGAGCGGGCCACTCAGAAATCCCTGCAAGGAGGTATGATGCCAGGACGTGGGGTTCTCCCAAACAGTGCACGTGGTGGTATGGCAAGACAGTACCAGTGCTCTCACTCCCTACCACACATACCCAAATTTTCCTCAGTGCTGCCCTCTGCTGATTTCTCCCCCCACACAGCAGCCGGCACTCAGCTCACTTGCCCTTCAGCTCCCACTGTAGCCCAGCCTGCCAGGCAGCACGAGGACTGGTACTGCCAGCTGAGGCACATTGGGGCGACAGCCGCCAGCCTGCCCCATGCCTCAGTGTTTTCCCTGACCTCTGTCCCAGCGCTGGAGCCAGCCGTCCACTGGAACTAGAGTAGGCTGAAAGAGCGAGATCTAAAGCCTcccatttttgttattttgttagtTTTTAGTTTATTCGAGCCACATGCCCTGATATTATTGCAGTTCCCTTTAGGTTGATGATTGTTTAACAGTAATGcttgtgtgattttgtgtgatTTGGTACACAAAGTTGTTAATGTCTGTATATTTCTCTCCTTTAATATgaatgtcaggaaaaaaaatgaggagaaaatattttcacacaattttATTACAGTTCCAAAACAGATGTTGTCTTGAGGTTATTAATATActtttctaaaacaaaaataattaattcacACTTCATTCACAAACCTACAAGCATTAAACtgtgaaaatataatattttaaacagtctTGTTTACATTCTGAATAGTCTGGTGTAACTAGATTTATGTATGGCCTTGTAGAAAATCCTCTTACCACCTGAATATGGGTTCTTAAGCAGTGCTACATTTCAAATgatagtatatatacacaaatttacTTCAACATCAGATGTCATATATTTTGATAGAAATAAATTAGACTTGGCATATGA
>XM_026934281.2
tttcaaactaagAAAATAATGTCCttaatccagtgtgcataagtTGCATAAATTTGATTTCCAGTCAGTCAGAATCAAACATCTAGCCAAAAGGGTAACAAAAGCTGTAgtatgtattttatatgtagGGAGGAAGTGCAGTGAGGGAGAGACTCCAATAACTGCAGTAAAACTATTAGGTTCACTTTCCTTACCAATAAAGTCTGAGATAAAAATCTATCACAAACTGGAGATATACCATCGTGTATTTTTGATAATCTAGTTTTAGTGAAATAGGCACAATACAAAAGTTTGCACTTAATAAGGGAATGCCTTGTACAGATAGAAGaattgtatgtgtttgttttcttggcttttgttgttccactgagtcagagtcactTGATGATGTTGAGGAACTAGTGGagttagatggatggagaaatttgtccatttttgttGCTGAACTATGTTCATGCAGTGTGTCAGGATAGtggaaaaagactaaaatagcatgtacagtctttttttaaatgtggcatGTTTGAATGGGACTTccagaaacatttcaaaacagtGGTGCGCATATTCTGCCTTCATAGTTAGTGCGATATTTGTAACATTAATTTGTAAGATTGTAAAATGAGTAAAACAAAGGAGGTGAGTTTCTCTCACgactttatttgtaaatcagaTGATCTCACGTTGATTGCAGCCCCTAGTTAGTGGACCCTTGGTTAGTGGGTGTTTTAAACTGATTAATATTTCCTGTTCCTCTTGATGTCTTATTTCTGGCAGTTTTTTTGTGCCACTTCAGCACAACCTACACACAGTAATAAATCTGACAAATATTGTTCTTTTACTATTTGTtctattacaaaaaataaattattgcatTATCTGTAAAAGAGGCAAATATTTCTTCCAGTATTtggttaaaatgttattatgcaTGGTATTAGTTGGACCAGGAGAGCAGGTAATGAGGGGTGTGATTGCTGAATGATGTCACTGAGGGTGGTCATGTAAAAGCTCAGGTAAGCCCACCGTGTCTCTCCTCATACCTGAAACCCTCAGAGAAGACCAGCTATGGAACATGCCAAGCCTCATCCACAGTTCTCCGACATGTACTCTGAAGTCATTGTCAGCTCAAGCGCAGATGTTCAGGGTCCTCCAAAGAAGGAGTCCACGGGGCCTGAAAGCAGTGGGGATGTGGCAGGTCGAGTTAGACTCCACCCGTCTCCATCTCGCAGGAGACATCGAACCACCTTCAGCCATGAACAGCTGGAGCAGCTGGAGTTAGCTTTCAGACACAACCACTACCCTGACATCTACTGCCGAGAGGAGCTGGCTCAGCAAACTAAACTCAATGAGGCCCGCATCCAGGTTTGGTTCCAGAACCGTCGTGCCAAGCAAAGGAAACAGGAGCGGGCCACTCAGAAATCCCTGCAAGGAGGTATGATGCCAGGACGTGGGGTTCTCCCAAACAGTGCACGTGGTGGTATGGCAAGACAGTACCAGTGCTCTCACTCCCTACCACACATACCCAAATTTTCCTCAGTGCTGCCCTCTGCTGATTTCTCCCCCCACACAGCAGCCGGCACTCAGCTCACTTGCCCTTCAGCTCCCACTGTAGCCCAGCCTGCCAGGCAGCACGAGGACTGGTACTGCCAGCTGAGGCACATTGGGGCGACAGCCGCCAGCCTGCCCCATGCCTCAGTGTTTTCCCTGACCTCTGTCCCAGCGCTGGAGCCAGCCGTCCACTGGAACTAGAGTAGGCTGAAAGAGCGAGATCTAAAGCCTcccatttttgttattttgttagtTTTTAGTTTATTCGAGCCACATGCCCTGATATTATTGCAGTTCCCTTTAGGTTGATGATTGTTTAACAGTAATGcttgtgtgattttgtgtgatTTGGTACACAAAGTTGTTAATGTCTGTATATTTCTCTCCTTTAATATgaatgtcaggaaaaaaaatgaggagaaaatattttcacacaattttATTACAGTTCCAAAACAGATGTTGTCTTGAGGTTATTAATATActtttctaaaacaaaaataattaattcacACTTCATTCACAAACCTACAAGCATTAAACtgtgaaaatataatattttaaacagtctTGTTTACATTCTGAATAGTCTGGTGTAACTAGATTTATGTATGGCCTTGTAGAAAATCCTCTTACCACCTGAATATGGGTTCTTAAGCAGTGCTACATTTCAAATgatagtatatatacacaaatttacTTCAACATCAGATGTCATATATTTTGATAGAAATAAATTAGACTTGGCATATGA

Function

NR:

description
homeobox protein prophet of Pit-1-like

GO:

id name namespace
GO:0021984 adenohypophysis development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934272.2 True 3121 mRNA 0.39 2 21517786 21522535
XM_026934281.2 False 2305 mRNA 0.41 3 21517786 21522535

Neighbor

gene id symbol gene type direction distance location
socs5b LOC108263298,LOC108422458,LOC107727375 coding upstream 16287 21480699 ~ 21501499 (+)
six3a six3,LOC107733790,LOC107585256 coding upstream 333968 21180935 ~ 21183818 (+)
slc3a1 slc3a1,LOC107585281,LOC107579201 coding upstream 507196 21002369 ~ 21010590 (+)
trnae-cuc_10 NA coding upstream 512267 21005450 ~ 21005519 (+)
ppm1ba ppm1b,LOC107733761,LOC107585253,LOC107698745,LOC107747533,LOC107666482 coding upstream 521408 20986889 ~ 20996378 (+)
ttc7a ttc7a,LOC107586483,LOC107699274 coding downstream 8736 21531271 ~ 21560099 (+)
epcam NA coding downstream 83850 21606385 ~ 21609142 (+)
thada thada,LOC104958480 coding downstream 123201 21645736 ~ 21731864 (+)
LOC113542474 zfp36l2 coding downstream 211222 21733757 ~ 21736533 (+)
haao haao,LOC107727361,LOC107699283,LOC107586504,LOC107590002,LOC107707146 coding downstream 377021 21899556 ~ 21905109 (+)
G50528 NA non-coding upstream 31 21516282 ~ 21517755 (+)
G50384 NA non-coding upstream 167753 21313204 ~ 21350033 (+)
G50311 NA non-coding upstream 303840 21210837 ~ 21213946 (+)
G50310 six2,six2a,LOC107666385,LOC107602488,LOC107602487 non-coding upstream 307671 21206394 ~ 21210115 (+)
G50297 NA non-coding upstream 319278 21198277 ~ 21198508 (+)
LOC117596875 NA non-coding downstream 2902 21525437 ~ 21526067 (+)
G50516 NA non-coding downstream 44880 21567415 ~ 21574053 (+)
G50772 NA non-coding downstream 346289 21868824 ~ 21869028 (+)
G50783 NA non-coding downstream 352278 21874813 ~ 21875015 (+)
LOC113545609 NA non-coding downstream 482183 22004718 ~ 22015489 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 398822 21025733 ~ 21118964 (+)
G49862 NA other upstream 942307 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 1125185 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 2161688 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 2255698 19256064 ~ 19262088 (+)
wu:fj16a03 NA other downstream 497787 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 962775 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 1261793 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 1388609 22911144 ~ 22913552 (+)
G51562 NA other downstream 1931893 23454428 ~ 23455549 (+)

Expression


Co-expression Network