tnfaip2b (LOC108263219)


Basic Information

Item Value
gene id tnfaip2b
gene name LOC108263219
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17921135 ~ 17926288 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934334.2
CTCTCTGCCCTCATGGCATCCATTTCATCTTGCTGGAGGCTACTGAACTGTTTTGGCTCAGGACATAGATCTGAGCAGAACGGAGCGATGACTGTTGGATCATCATCCCCCATAGTCAGAAGGGTCTCACCTTCTAAGTCTAAATTTTCCAAATTTAAAGTAAACCTACCATTTTTCAAAAGGAATACCCATGTTCAGGATGACATCAAGTCTGAAGAGGTTCTGTTAACTTTTCAGGAGAACCTACAGCAGCATCACTTGGCAATGGCAGGGCAGCAGCTGATATATCGAGAGGAGCATTTATTTGCACTGAAACAAACAGGGGTGGGATACAGCAAGACCATATTGGAGGAAGATGAGAAGGAAAAACTGATTAAAGACTCTGAAGACTTTATAAAGAAAGTTATGTCAACAGTTGAGAAATCTTTTGATATTCAAACTAACGAAGAGAAAGAATTTCTAAAAGAGGCAGTCCTAGCCATATACCAAGAGGAAGAACAGGACAGGAGATGGGAAGGTGTCGAGAAAAATGAACGTCCTCCATGGAGGCCGAGGTGTTGCAGACTGGCCCATGACCGCCTGCTTCAGAATATGGTTACACAGCGGATGGAGCAGGCAAAGCTAGATTCAAATGTTAACATTAAGTCTTCAGTTCAATTGGAGATCACTGCCAAGGGTAAACAACTAAAGGAAGACCTGCTACAAATTGCAAAGAATGTGACGAGCTGCTACCCAAAAGAGAATGTGTGCCAACTGTATGCCAAAATATACCATCAGGTTTTTAGGGACAAGCTCAGAGAAGTTGCTGACTATGGACTTGCTGATGATGACTGCTTACATATACTTCAGTGGGTGAACATTCTTTACCCCGAgattCTGAGGCATGAAGAGCTCTCTGGGGTGATTGAATATGAACATCTTGAGGCACTGCTCCCTGGTGATATCCTTGAACTGTTGGAAGAGCAGTTTTTGACCAATAAAGAGAATGAGCTGCAGACATGGTGTCAAAAGGCCTTGAGCAGTGAGAAGAATGCTAATCCTGAACTGATGGATGATTGCTACTTAAGCCACCTGGCTATTGATGTGATTCAGTGTGTCAATGCTCTTCTAACCTCATCAAAGTGTGTGCTGGGCTCTTGGTCAAAAACTCAGAGAATCACACACCAGTTAAAACAATTCCTTATTAATTACCAGCATTTCCTTGAGAAAGTGATTGAGGATAATCGGGTGAATGCTGATGCTGTATTGAAGGCCAACCTGCCCTGTATCAGAGATCTCAGGAATTACATAATGATGAATCCAGATCCCTTCCCTCAACACATCAAGAATGACTATATAGATCTGCTCACCAGGATAAGAGACACATGCCACAGTTATTTCACCAAACGGATCCATAAAGCTCTCAAGGGGACATACTCCAAACTGGGTACCCAAGAATGGATAAAACACAATGAACATGTGTGTAGTGAATTGCTTGATGGGGTGCATAGACACATTCAGGAAATCAGAAATCTACATGAAGCATGCGTTAAGGAATTGGtcagcaagctccatgaagaagTGTTGGCTGAGTATGTGAGGaaaatgatgaagaagaagatcaaaCTTAAAGATGAGAAGAAACAACACCAAGCAGCTGAAGCATTACGCAAAAATAGTCAGAAAATACACGCTCTGTTTACTGAGGCTGGGTCAGACATGGAGGGCCTGGAAGACATCCTGCCCAAACTAGCTGAACTGCTGACACTAAATGATCCACAGTGCATTGAACTCCAATTGGTCACTCTGTCTAACATTTACCCAGACCTCAGTGAAGCCCATGTCTCTGCCTGGCTACACCTCAAGGCAAACCTCTCTCCCTCAGACTTCAAAAAAATTAAGAAGACCTTTTCTATGTATCATGCTCAGACCTCAGAAACCACTGTAGGTGGCCAGGACCCCCTTCCTTCAAGCAGGAATTTCTTCTCCAAAGTAGCCATTAAGCAATCCTTTGCAGTACTGTAAAATACCAAATGTTTCTAATTCTCATGCTGTATGTtgtatttataatgttttatgcAGTGCCCTGTGCAATGTGAAATGATTAAgctattgtaattattttaaagaattgtAAGTAGGTGTCAGTACGCATGTTACtgtatgttttcatgtttttatctgaTGTGTCTTGTTGAGTGGGGCATTAGTACAGGCCCTCTGTAAAGTCCAAAATGTAGTAATGATTATTAAGAGACTTTCCTGCCATCCGTAACATGGAAAGTAACAGTAATATACTTTCTATTTAGTATGTGTAAACATTCTCTTCCTGTTTTACTGCGGTGCGTAATGACACTTTCTACTGTGCTGAACAATGAAGTTACTAGACATTGATTCTTGGCTTAACACTTGTTCTGGTATGTGACCAGTATTCAGTGGGAATAGCCTCAGACCTCAGAGAATTACTATAAGATACAGGATATGAGTTTTCCTTTACAAATAAACCAGGCTTAGTTACAGCTATTATGAATTAAACAATAACATCCTTATCCTTTCCTGTCTGATTGTGGGTGCTCATTAAATAGAGGAAATGGGGAAGTTTCTTTGTTTTAGTGTTTGTATGTCTATATCTGAAGTTTGATTCCCAAAATGGTACACTATGGTGACCAGTTCTgagaaattcaaaaataaataaatgcattattcactgaataaatgctttttttatgtttta
>XM_026934343.2
GTTCACATGCACGGGAAGATGTTTTTCCACGCGCCAATTCTTCCCCCATGAGTTTTAGTGGAGGAGGATGCAGTCTATATAAGTAGCCCAAACTGTTGAACAGAGCAACCGGAGCGCGCGACAGCTGGAGCGATGACTGTTGGATCATCATCCCCCATAGTCAGAAGGGTCTCACCTTCTAAGTCTAAATTTTCCAAATTTAAAGTAAACCTACCATTTTTCAAAAGGAATACCCATGTTCAGGATGACATCAAGTCTGAAGAGGTTCTGTTAACTTTTCAGGAGAACCTACAGCAGCATCACTTGGCAATGGCAGGGCAGCAGCTGATATATCGAGAGGAGCATTTATTTGCACTGAAACAAACAGGGGTGGGATACAGCAAGACCATATTGGAGGAAGATGAGAAGGAAAAACTGATTAAAGACTCTGAAGACTTTATAAAGAAAGTTATGTCAACAGTTGAGAAATCTTTTGATATTCAAACTAACGAAGAGAAAGAATTTCTAAAAGAGGCAGTCCTAGCCATATACCAAGAGGAAGAACAGGACAGGAGATGGGAAGGTGTCGAGAAAAATGAACGTCCTCCATGGAGGCCGAGGTGTTGCAGACTGGCCCATGACCGCCTGCTTCAGAATATGGTTACACAGCGGATGGAGCAGGCAAAGCTAGATTCAAATGTTAACATTAAGTCTTCAGTTCAATTGGAGATCACTGCCAAGGGTAAACAACTAAAGGAAGACCTGCTACAAATTGCAAAGAATGTGACGAGCTGCTACCCAAAAGAGAATGTGTGCCAACTGTATGCCAAAATATACCATCAGGTTTTTAGGGACAAGCTCAGAGAAGTTGCTGACTATGGACTTGCTGATGATGACTGCTTACATATACTTCAGTGGGTGAACATTCTTTACCCCGAgattCTGAGGCATGAAGAGCTCTCTGGGGTGATTGAATATGAACATCTTGAGGCACTGCTCCCTGGTGATATCCTTGAACTGTTGGAAGAGCAGTTTTTGACCAATAAAGAGAATGAGCTGCAGACATGGTGTCAAAAGGCCTTGAGCAGTGAGAAGAATGCTAATCCTGAACTGATGGATGATTGCTACTTAAGCCACCTGGCTATTGATGTGATTCAGTGTGTCAATGCTCTTCTAACCTCATCAAAGTGTGTGCTGGGCTCTTGGTCAAAAACTCAGAGAATCACACACCAGTTAAAACAATTCCTTATTAATTACCAGCATTTCCTTGAGAAAGTGATTGAGGATAATCGGGTGAATGCTGATGCTGTATTGAAGGCCAACCTGCCCTGTATCAGAGATCTCAGGAATTACATAATGATGAATCCAGATCCCTTCCCTCAACACATCAAGAATGACTATATAGATCTGCTCACCAGGATAAGAGACACATGCCACAGTTATTTCACCAAACGGATCCATAAAGCTCTCAAGGGGACATACTCCAAACTGGGTACCCAAGAATGGATAAAACACAATGAACATGTGTGTAGTGAATTGCTTGATGGGGTGCATAGACACATTCAGGAAATCAGAAATCTACATGAAGCATGCGTTAAGGAATTGGtcagcaagctccatgaagaagTGTTGGCTGAGTATGTGAGGaaaatgatgaagaagaagatcaaaCTTAAAGATGAGAAGAAACAACACCAAGCAGCTGAAGCATTACGCAAAAATAGTCAGAAAATACACGCTCTGTTTACTGAGGCTGGGTCAGACATGGAGGGCCTGGAAGACATCCTGCCCAAACTAGCTGAACTGCTGACACTAAATGATCCACAGTGCATTGAACTCCAATTGGTCACTCTGTCTAACATTTACCCAGACCTCAGTGAAGCCCATGTCTCTGCCTGGCTACACCTCAAGGCAAACCTCTCTCCCTCAGACTTCAAAAAAATTAAGAAGACCTTTTCTATGTATCATGCTCAGACCTCAGAAACCACTGTAGGTGGCCAGGACCCCCTTCCTTCAAGCAGGAATTTCTTCTCCAAAGTAGCCATTAAGCAATCCTTTGCAGTACTGTAAAATACCAAATGTTTCTAATTCTCATGCTGTATGTtgtatttataatgttttatgcAGTGCCCTGTGCAATGTGAAATGATTAAgctattgtaattattttaaagaattgtAAGTAGGTGTCAGTACGCATGTTACtgtatgttttcatgtttttatctgaTGTGTCTTGTTGAGTGGGGCATTAGTACAGGCCCTCTGTAAAGTCCAAAATGTAGTAATGATTATTAAGAGACTTTCCTGCCATCCGTAACATGGAAAGTAACAGTAATATACTTTCTATTTAGTATGTGTAAACATTCTCTTCCTGTTTTACTGCGGTGCGTAATGACACTTTCTACTGTGCTGAACAATGAAGTTACTAGACATTGATTCTTGGCTTAACACTTGTTCTGGTATGTGACCAGTATTCAGTGGGAATAGCCTCAGACCTCAGAGAATTACTATAAGATACAGGATATGAGTTTTCCTTTACAAATAAACCAGGCTTAGTTACAGCTATTATGAATTAAACAATAACATCCTTATCCTTTCCTGTCTGATTGTGGGTGCTCATTAAATAGAGGAAATGGGGAAGTTTCTTTGTTTTAGTGTTTGTATGTCTATATCTGAAGTTTGATTCCCAAAATGGTACACTATGGTGACCAGTTCTgagaaattcaaaaataaataaatgcattattcactgaataaatgctttttttatgtttta

Function

NR:

description
PREDICTED: tumor necrosis factor alpha-induced protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934334.2 False 2713 mRNA 0.41 12 17921135 17926288
XM_026934343.2 True 2758 mRNA 0.41 12 17921878 17926288

Neighbor

gene id symbol gene type direction distance location
LOC113544778 NA coding upstream 1798 17903229 ~ 17919337 (+)
LOC117595658 LOC108262911 coding upstream 35839 17867571 ~ 17885296 (+)
aifm2 aifm2 coding upstream 56129 17847464 ~ 17865006 (+)
gins1 gins1,LOC107727378,LOC107708421 coding upstream 98363 17818638 ~ 17822772 (+)
LOC113537762 lipp,LOC108263057,LOC108262195 coding upstream 108541 17806659 ~ 17812594 (+)
LOC113541463 eif5,LOC107708426,LOC107721218,LOC107582488,LOC107589547 coding downstream 5964 17932252 ~ 17939836 (+)
mark3a mark3,mark3a coding downstream 17043 17943331 ~ 17965306 (+)
trmt61a trmt61a,LOC107582491,LOC107678528,LOC107698149,LOC107589545 coding downstream 45438 17971726 ~ 17982745 (+)
LOC113543388 apopt1 coding downstream 85527 18011815 ~ 18015780 (+)
klc1a klc1 coding downstream 92107 18018395 ~ 18046867 (+)
G48302 NA non-coding upstream 23679 17896322 ~ 17897456 (+)
G48209 gbf1 non-coding upstream 152199 17726419 ~ 17768936 (+)
G48133 NA non-coding upstream 317981 17601874 ~ 17603154 (+)
G48095 NA non-coding upstream 452987 17467948 ~ 17468148 (+)
G47951 NA non-coding upstream 789134 17131462 ~ 17132001 (+)
G48323 NA non-coding downstream 59993 17986281 ~ 17986571 (+)
LOC113541886 NA non-coding downstream 155329 18081617 ~ 18084799 (+)
G48478 NA non-coding downstream 248012 18174300 ~ 18174499 (+)
G48494 NA non-coding downstream 295780 18222068 ~ 18222547 (+)
G48571 c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107690203,LOC107678567 non-coding downstream 534385 18460673 ~ 18462196 (+)
LOC113541016 ankrd2 other upstream 944106 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 1453785 16465939 ~ 16467350 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 1612237 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 1683593 16234514 ~ 16237542 (+)
cxcl12a cxcl12 other upstream 1787133 16124627 ~ 16134002 (+)
dlg5a dlg5 other downstream 250453 18176741 ~ 18222050 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other downstream 976150 18902438 ~ 18912195 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 1100680 19026968 ~ 19036644 (+)
grxcr1b LOC108263619 other downstream 1287919 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 1329776 19256064 ~ 19262088 (+)

Expression


Co-expression Network