LOC113538988 (LOC108263544)


Basic Information

Item Value
gene id LOC113538988
gene name LOC108263544
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18695720 ~ 18699679 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934506.2
CATTCTGTGTGTTACTGACACCTCAGTTCTGCAAGCTTAACACATCGCGCAGAATATAAAACCCCGACAAGTCTGCAAAGCGATAAAACGCACGACTCTCAGCATGGAGCGTCTGCTAAACGGAGCAGGCTGGAGACGGGAAGAGCAGCGCTATCAGCCACCTCCATCATCACAGCGCATCGCAAGGGCACCTGCGCTCAGCAGAGCCAGCGCGAGCGGGGCATCAACTCCGAAAGCAGGCCACAGCTCGCGCCACTTTGCTCCTGAGATGCCTCTAAGGATGACGAACGAGAAAGAATTACTGCGCGGCCTGAACGACCGATTCGCGGGCTTTATCGAGAAGGTGCATCGTCTGGAAAGCCAAAACAGAGCGCTGGAAAGGGAAATAGAGGACATTCGACTAAAAGCAAAGTCGTCCACGTCTCTGGCCAAGCAGTACGAGCCGGAGCTGCAGGAGCTGAGGAGGCAGGTGCGTGACATGGCAATGCAGAAGCACCGGATGGAGCTGGAGCAGAAGCGTGTGGAGGACGAGTTTAACGCGCTGAGGGAGAAATGCGAAGGGGAGGCGCGCAGCAGAGCTGAAGCCGAGGAGAGCATTTCTGCGCTGAAGAAATACATCGACAACGCGTATCTAGCCCAAcaagagatggacagaaaggCGAAAGCTCTTACAGACGAGATCGAGTTCCTGAAGAGAAACCACGAGGCTGAAGTGAGCGATATTCTGACGCAGATGAAGGAGACGCGGGTTTGTGCAGAAGTGAGCGGTTTGGGGAAAGGCGAGCTCACCGCGGCGCTCAGGAACATCAGGACACAGCTGGAAGGTCGCGCTTTCTGTCTCGACACGCACTCAGAGCAGCACTTCAGCAGTCAGCTGGCCAGACTCACCAAAGCTGCCGAGACCGACAGAGAGGCTCTGATAGCCACAAAAGCTGAAATCAACCAATACAGGAGGCAGCTGCAGACCAAGAGCGTGGAGCTGGATTCAGTCAGAGGGATGAGAGAAGCTCTGGAGAGGCAGCTGTATGACCTCGAGCAACGACACACCGCCGAAATCCATCACTACCAGGACACCATTAGAGAACTGGAACAGGAGCTGAAAAACACCAAATATGACATGAGTAGCCATGTGCAAGAGTATCGCGATCTGCTAAATGTGAAAATGGCCTTGGATGCTGAAATCTATTCATACAGAAAATTGCTGGAGGGTGAGGAGTCAAGATACTCCACTCTTTCTGATGCACAGATACCAGTGCCTTATGTTTACAGGCAGTCACCCATCTATACTCTGCCTAGTGTCCCAAAGGTAGGGGGAGTGACTCGCAAAGCAGAGCCGCAGTACAAGTTTGTTGAGGAGATTATTACAGAGACAACCAGGGAAGACATAGAGATATCAGACACAGGGTCTGATGATGCTGAAGAACAAAGGGAGGGTGATAAAGTGTGTAGCGAGAAAGAGAATGCAGGTGTagcaacaggaagtgaagagcacttagaggaaaaaaagaccCAAGAATCAGACGCAGAGGATAACACAGGCAGCCCCAATGCAGAACAACTGGAccaacagaaacagaaaccaaCAGAAAAGGAAGAGCAGTTACTAAAAAAGTctacagatgttacagatgttaTGGATCTCAAGGAAGGCGGCATGAATACTGAACCAGCACAGAACAATTTAACTGCATCAGAACAAACTGGAGAGAAGGATACGGATAACAATTACAACAAAGATGATGACACAGACTCCAAAACCAAAGAACCAGATTtagacacaaaaacagaaaaaccacAGGCAGATATGAGTGGTGATGAGGATGTAGAAAAGGTAACTCTCGACACTGAAAAAGGGAAACAAGACATAGCAAAAGAAATAGACCAAGCCAGTATTAAACAACCACAGCCAACAGAGCAAACAGCCACACAGGAGGCCATTACAGAGCCAGGAAAAAGTGCCATGGAAGAGATTTCTCCAAAATCTGAGAACgaaacagcaaaaaaagagacacaaaatGTAGCTGAGCCTGAAGATTCCTCTCCTGGAAAAGCaatggagaaagacagagaaattaGTGAGGTGAAATCTGTGAAGGTGGACACATCTACTGCTGACTCACAGCCAGTATCTCAAAAAGCTGAGACAGGACAAGAGACACGTCCTAACAGCCAAGCAGATTCAAAGCAGAGTGTAGAAACCTCACAGGCTGAAGTACTCGATACTACTAATGCAGCGAGTGCACAGGATAATGCAGCGGAGGTGCAAAAAGAGCTGGCAGAGAAAGTAAAGACAGAGGCACCGGCGCTAAAAAgtgaagtaaaagaaataaaatctgagGAGGTGAAAAAAGAGGACAGCAAACCAGAGGTTGATAGAGAAACTGTGAAACCAGAAAAGGGAGACAGTGCCCAATCTACAGAGGCACAAAAAACACAGGACAATGTCTCCAAAACTGCTGCCACAGAAACAGAAGTTGAAACATCTGAAACAAAGGAGATTCAAACAAAGGACATGATGGACAGTGCAAAAAAGGAGGAAGATACTGAAtcaaagaaaacagagaaagaggtTGATCAAATGCAGATCAAAGAACAGATAAAAGTTGTAGGGATGGAGACAAAATCAGAGGAGCAGTCTCAGAAAAATGCAGATGGCACTAAAGAAGATACGGTAGACAGTCCTAAAACAGAGGAAAATGTAACAACCAAATCCTCTGAAATACAGAAAGAGGACATTCAGAAGGATACAGAGCCAAAATCTACTGAAAAGGCAACAAAATATGAGCAAAAACCAGAGAAACAAGGTTCCAAGCAGCATGAACTGGAGACTTCGGAGGACATCAAAGAGATGGATAGAATCAAGCCTAAGGGGCAAGAGATAGACAGTAAAACCTCTAAAGATGTACAGCCTGAACAAAGTGTTCCAAAGACCTCACCAGAAAAAGAACAAAGTAAagaccagacacacacacacaaagactcaCGTGAAATCAAGGACACAAAAATTGAGATATCAGACAAGACTGATAGCAGCGAGGCAAAGCAGGACAGTAGCAAGATGGGCATGACTAAAAGTAAAGATCTTGAAAAGGATCCTACACCCCTGAAAGATTCCAAAAAACCGGAGCCTACAGAGAAAGAACAAGTTTCTGTATCTGAGAAAGGGCAGGACAACAGCATGAAAGCAGatctgaaaaaagagagagacgtGCCAGAAGTAACTGAGAATGGAgtaaatatatgaatgaatttttgAGACAGCTTCACAGGCAATATTAGTAATGCAAAGTGTAAAAGTAACTAGCAGTTTAGATAAGTCATGTGAATGTTGCACAAATGCTTTCAAAACTGCATGAACAGCTACATAACTGCATGAAGCAACAAATAACTGCAGTGTTAACCTACATGCAACTTAAGAGCTGATGTATGCATGTTTGCTGATATCTAGGTTAAATCTAGGctgatgaataaaaaatagataataaaatagaatgtatatgtttaaatgcaaatattttgctATACCACAACTGCTTGTTAGATGAATGTGTATATTTAACAGAATGCTATATATT

Function

NR:

description
PREDICTED: neurofilament medium polypeptide-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934506.2 True 3575 mRNA 0.45 3 18695720 18699679

Neighbor

gene id symbol gene type direction distance location
ifit8 LOC108263543 coding upstream 3942 18688477 ~ 18691778 (+)
comtd1 LOC108444215 coding upstream 9109 18683496 ~ 18686611 (+)
znf503 znf503,LOC107708443,LOC107747464,LOC103355656,LOC102798683 coding upstream 73425 18619229 ~ 18622295 (+)
kcnma1a kcnma1 coding upstream 323231 18227260 ~ 18372489 (+)
anxa11a anxa11,LOC108263209,LOC106613295 coding upstream 522533 18158463 ~ 18173187 (+)
tet1 tet1 coding downstream 153023 18852702 ~ 18883431 (+)
eif4e1c if4e,LOC108444323,LOC107690176,LOC107747456,LOC107582514 coding downstream 191542 18891221 ~ 18895398 (+)
ccar1 ccar1,LOC107690173,LOC107582549,LOC107708455,LOC107747452 coding downstream 213903 18913582 ~ 18933062 (+)
stox1 stox1 coding downstream 240086 18939765 ~ 18956226 (+)
si:ch211-198a12.6 si:ch211-198a12.6,LOC108263519,LOC108444387,LOC103030417,LOC107589522,LOC107747450,LOC107678580,LOC107690167 coding downstream 258705 18958384 ~ 18963875 (+)
G48571 c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107690203,LOC107678567 non-coding upstream 233524 18460673 ~ 18462196 (+)
G48494 NA non-coding upstream 473173 18222068 ~ 18222547 (+)
G48478 NA non-coding upstream 521221 18174300 ~ 18174499 (+)
LOC113541886 NA non-coding upstream 610921 18081617 ~ 18084799 (+)
G48323 NA non-coding upstream 709149 17986281 ~ 17986571 (+)
G48690 vdac2,LOC107376051,LOC107090363,LOC103476817,LOC108444242 non-coding downstream 8353 18708032 ~ 18711295 (+)
G48908 NA non-coding downstream 267727 18967406 ~ 18967777 (+)
G48911 LOC108263518,LOC108262933 non-coding downstream 271119 18970798 ~ 18974710 (+)
LOC117596836 LOC107678534,LOC108263526,LOC107570529 non-coding downstream 314512 19014191 ~ 19015574 (+)
G49104 dcaf10,LOC107582526,LOC107733687,LOC107708468 non-coding downstream 502551 19202230 ~ 19203687 (+)
dlg5a dlg5 other upstream 473670 18176741 ~ 18222050 (+)
LOC113541016 ankrd2 other upstream 1718691 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 2228370 16465939 ~ 16467350 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 2386822 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 2458178 16234514 ~ 16237542 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other downstream 202759 18902438 ~ 18912195 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 327289 19026968 ~ 19036644 (+)
grxcr1b LOC108263619 other downstream 514528 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 556385 19256064 ~ 19262088 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other downstream 641671 19341350 ~ 19356098 (+)

Expression


Co-expression Network