sfxn3 (LOC108263463,LOC108441766,LOC107678536,LOC107708462,LOC107582521,LOC107570532,LOC107733760)


Basic Information

Item Value
gene id sfxn3
gene name LOC108263463,LOC108441766,LOC107678536,LOC107708462,LOC107582521,LOC107570532,LOC107733760
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19036992 ~ 19044321 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934553.2
CctcgatacacacacacacacacacacatgcacgcgcgCGCGGGCCGTTACTCTTAATCATCGCAGACATCAAGCCGTGTAGAAGCTGCGTTTGAGGGGTCATTCAGTTTACACGCATCCCGAGGTGCATCTTCTGTTTTAGAGTTTGACACAGAAAGTAGAAGAGGAAGGATGGCTGGGGATCTGCCGCTGAACATCAACATTAAGGAGCCACAATGGGACCAGAGTACGTTTATGGGCAGAGCCCGGCATTTCTTCATGGTGACTGACCCAAGAAATGTGCTGCTGTCGAATGAGGTTCTGGAGGACGCACGAGTCATTGTGGAGGATTACAGGAAGGGAATTGTGCAACCAGGCCTGACAGAGGATCAACTATGGAGGGCCAAATACATCTATGACTCTGCCTTCCATCCCGATACGGGTGAGAAGATGCTGCTGATTGGTCGCATGTCTGCACAAGTGCCAATGAACATGACCATCACAGGCTGCATGCTCACATTCTATAGGACAACTCCAGCAGTTGTGTTCTGGCAGTGGGTCAACCAGTCCTTCAATGCCATCGTCAACTACACAAACCGCAGTGGAGATGCACCAATCACTGTAAATCAGCTTGGAGCAGCCTATGTCAGTGCCACAACTGGAGCTGTGGTCACTGCTCTTGGCCTCAAGTCCCTAACCAAGCACCTGCCAGCTATTATTGGACGGTTTATTCCATTTGCTGCAGTGGCAGCAGCAAACTGCATTAACATTCCCTTCATGAGACAACGGGAACTGAAGTATGGCATTCCTGTCACTGACGAGGAGGGGAATCGCCTGGGAGAGTCTCCCAGCGCTGCTCAGCAGGCCATTGTACAGGTGGTGGTGTCCCGAATCGGCATGGCAGTACCAGCCATGGCTATTCCTCCCATTATCATGAATGCCTTGGAGAAAAAAGCTTTCATGAAGCGCTTCCCAGTGCTCAATGCCCCAGTACAGGTTGGGCTTGTGGGATTATGTCTGGTGTTTGCTACTCCGTTGTGCTGCGCCCTGTTCCCACAGAAGAGctctaTGAAGGTGAGCAGCCTGGAGCCTGAGCTGCAGGAGAGGATACGACAGAGCAATCCTAACACGACCGTGGTTTATTTCAACAAGGGCTTGTAGGGGACTTTTTCTTCAAGTCCAAACTGCTGTCTGTACTTTGCTATAATGGAGTTCAGTGGACACAACTTGAAGAGTAAAtattgaatttcttttttgtttgttcattttctgtttaaaaatgaatggtGTGTTGTAAAACCTGCACTTTTCCTTAAGACAATATGCAGTCCTGGCTGACATGTACCTGATACTATGAGGATGTTGGAGGATTTTATTACTGCTGCGTTTATGATCACAGACCCTTTATGTGCTAATATTAATATGTGGCGTCCCCAATTATTTTTTCATGTGAATtctatttatcattatttatttttatttgcaaaaatacttgatgtgtgtatatgttagTGTGTTTAGATCTACAATATTTATACCTAACTTTCCAGACCAAACATCTGTCCACAGTTTAAGTGTCTAATTACAAGAAATGGTCTTGAAGAATCAATTTTGGGTCATGGGATTATTTTTAACCAGTTTAAAAGGTTTCATCTggcatgctcctgagtgtgcaCCTGAAGTGCTCTTAACCCTTATGACCCTCACACTACTGACCTAATAGACCCTGGTGGATACGAAAGTTGAGATGTATACACACTCCTCTGTAAACACATCCAGATCTAAACTTTTTGGTGATTGTTTGGTGGTCATACTAAGTCAGCGTGTGTTTAAGCCTTGTGTGGTTTTAACTAGTATGAGTTGAATGgtgcatataaatataaataaacaaatatatatattcatatatatattcaaatgtTACATTGTGGGTATAGACTGATTTGTGGGTTTAGTGGTGTCAAAACTGCTGAAGAATGTGGTGTCAGTGTAATGCTTAAAATGTCTAGTTTCTATTTTGACCATAGGCCATTGTGAAGTTAACAGAGAAACATGTATCTGATAGCTAGAAATGGAATTATTAAagttaattttttgtttttgttacatctTATACAGTCACCGAAGCATGTTTTAATTCTCTATTACTGGCAGTGGCATAGGGAATAAAATCTGTTATTGTTACACAGTTCTGAAATAAGCCATGATGGATGCaacataaaattatatttatttttgtgtcaaTAGATGTGGTTGCAATGTACCAAAAATGTGATTATAACCCTGTTATACTAAGAAGACCTTTAATTCCTGTTCTATTTGGAGCATATATGATCAAACATATAGTTCAAAAAAGTATTGTAATGAGGTGataatgttttgtgttgttttgtgaaGTGTTTCTGTGGATGAATTTAACATACTCTGCAGTGTTTCGTTCTATCGTTCCACTTGAACTGTGTTGTATGAAATTTAGTTTGTTTTGGGAGGGAAAAACATGCTCTGAGGGGGAGTAGACAGCCCTACTATTCATGCTCACTACTTGGGCTGATGCATAAAACACTGGCTTCTATTAACTAATCTATTGTTTTGGATATTATGCAAatacaatgtttaattaataataagcatGAACGATTTCAGATATAAATCCCAAATTAAACATAATGCTAAATGGCCAATAGCAATGTGGAcctgtataactgtataaagTCAAATGTTGGCTTGGGGAGTTCAGAGCAGCTTATGAGCTTAAATGCAGATCACAGAATTAGGTTAGGAATGGCACAGTGACTCCAGCACTACTGTTTCAACACTGGCAAGTATGTTAAGACGTGAGCACATTCTGAAACACACTGCCTTCAGAATCATCCTATGTGAATGTACTGTAAGCAATCACAGTATGTAACTAACTCTGACTAATAAAGTTATAATACAAGTTAA

Function

NR:

description
PREDICTED: sideroflexin-1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K23500 SFXN1_3; sideroflexin-1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934553.2 True 2922 mRNA 0.41 11 19036992 19044321

Neighbor

gene id symbol gene type direction distance location
mat1a mat1a,LOC108263526,LOC107678534,LOC107582520,LOC107708460,LOC107733750,LOC105911600 coding downstream 18083 19011981 ~ 19018909 (-)
si:dkey-228d14.5 LOC108262905 coding downstream 133472 18898163 ~ 18903520 (-)
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding downstream 184885 18845152 ~ 18852107 (-)
alox5a alox5,alox5a,LOC107747471,LOC107582511,LOC107690200,LOC107678516,LOC107708393 coding downstream 199195 18831551 ~ 18837797 (-)
washc2c fam21c coding downstream 208670 18810075 ~ 18828322 (-)
lzts2a lzts2 coding upstream 20712 19065033 ~ 19114569 (-)
sema4ga LOC108263187,LOC108441763 coding upstream 94174 19138495 ~ 19171153 (-)
slf2 LOC108263189 coding upstream 128919 19173240 ~ 19185983 (-)
wdr32 dcaf10,wdr32,LOC107708468,LOC107678556,LOC107733687,LOC107582526 coding upstream 158791 19203112 ~ 19214161 (-)
pomk pomk coding upstream 165958 19210279 ~ 19212029 (-)
G48975 NA non-coding downstream 67196 18969591 ~ 18969796 (-)
G48970 NA non-coding downstream 79533 18957157 ~ 18957459 (-)
G48954 NA non-coding downstream 107490 18928182 ~ 18929502 (-)
G48947 NA non-coding downstream 146180 18890563 ~ 18890812 (-)
G48940 NA non-coding downstream 183279 18853513 ~ 18853713 (-)
G49053 NA non-coding upstream 8206 19052527 ~ 19052751 (-)
G49108 NA non-coding upstream 146006 19190327 ~ 19190615 (-)
G49184 NA non-coding upstream 207272 19251593 ~ 19251863 (-)
G49215 NA non-coding upstream 356343 19400664 ~ 19400863 (-)
G49232 NA non-coding upstream 383425 19427746 ~ 19428725 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other downstream 423471 18330368 ~ 18613521 (-)
col13a1 col13a1 other downstream 1375573 17578178 ~ 17661419 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other downstream 1462570 17561404 ~ 17574422 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other downstream 1560900 17471187 ~ 17476092 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other downstream 2054263 16979131 ~ 16982729 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other upstream 272166 19316487 ~ 19319733 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other upstream 570396 19614717 ~ 19667661 (-)
slc4a11 slc4a11,LOC107695019 other upstream 672279 19716600 ~ 19768134 (-)
metap1 metap1,LOC107556924 other upstream 1137732 20182053 ~ 20205593 (-)
atp10d atp10d,LOC107556926 other upstream 1180588 20224909 ~ 20256520 (-)

Expression


Co-expression Network