si:dkey-174i8.1 (LOC108262936,LOC108438205,LOC107568550,LOC107743623,LOC107568549,LOC107696867)


Basic Information

Item Value
gene id si:dkey-174i8.1
gene name LOC108262936,LOC108438205,LOC107568550,LOC107743623,LOC107568549,LOC107696867
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10323316 ~ 10330221 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934564.2
TGATTTCGCTTCATTCAGATAGTGTTAGAGAGACAAATCTGCTTTGGGAATTATGGGCTTTAATTGCTCACTTGGGATATTTATTTGGACATATTCAGATATTATGACCAGATAGAATCTgatttcactgtatttttttctgtcagatgGAAGGGTATTCTAACCACAGTGGCACAGAGGTAGACAGGATTGCCTGATCTGGATATGACTGTGGTCTGGAACTGGGGTTTGCCCACTTTCTGGGTGGCACTCAGCTGCCTCTCATGCTTGAGACTGGCACTGCCACTCAGTGGAGAGCGCAAGATCTACCCAAAACCACCTACCATGGGTAAAGTCCCTCCACACATCATCTTTGTGATGGTGGACGATCAGGGCTACAATGATGTGGGCTACCATGGCTCGGACATCCACACGCCGGTACTGGACCAGCTGGCTGCTGAAGGGGTGAAGCTGGAGAACTACTATGTCCAGCCAATCTGCTCACCCTCTCGTAGTCAGCTCATGACCGGACGGTATCAAATTCACACTGGCCTTCAGCACTCCATCATTCGCTCACGTCAGCCCCTGTGTCTGCCCCTCGACATGCCCACACTTCCCGAAAGGCTGCGTCAGGCCGGCTACAGCACCCACATGGTGGGAAAGTGGCACCTGGGCTTCTGCCGGCCTGAGTGTCTGCCCACTAGCCGAGGCTTTCAGAGCTTTCTGGGTTCACTGACTGGTAGTGGAGACCATTTTAACTTCCAGAGCTGTGACGGAGCAGAGACTTGTGGCTTTGACCTGCACGATGGTGAACGACCGGCCTGGGAGTTGAGTGGGAACTACTCCACATGGCTGTATGCACAGAGGGTGAAAACAATCTTGCGGACTCATGACCAGCAGAAGCCTCTGTTCCTGTACGTGGCACTCCAGGCTGCTCACACTCCTTTACAGGCTCCTGCTCATCTCCTCCAGCGTTATGCTTCTCTTGGGAATCAGCCACGGCGCCATTACGCCGCCATGCTAAGTGGTGTGGATGAGGCTGTGGGCGAGATTGTGGCGGAGATGCGTAATCGAGGGTACTACCGTAACTCCGTGCTCATCTACTCTTCAGATAACGGAGGCCAGCCTCTGTCGGGGGGCTGCAACTGGCCCCTCCGTGGAGGGAAAGGCTCATACTGGGAGGGGGGAGTGCGAGCGGTGGGCTTTGTTCACAGCCCTctgctgaagatgaagaggaagatcAGTCGTGCTTTAATACATGTCTCAGATTGGTACCCGACCTTGCTGTATCTGGCAGGATCTCCTGAGCCAGACCCTCAGCGCTTAGATGGGTGTAATGTTTGGGGGGCCATCAGTCAGGGCCTACCTAGCCCTCGTACTGAAATCTTGTTTAACATCGACCCTGTTTCGCGGCGACATGGAGAGCATGATCGCAGGCTGTTGATGGAAAACGGCTTTGGGATGTGGGACACAGGAGTGCGTGCAGCAATTCGAGTGGGTGACTGGAAGCTCCTGACAGGGAACGTGGGAGATGGAGACTGGTTCCCCCCACAGATCCTGCCTGGAGCTCCACAGCAGTGGCAGGACATGGAAAAGAGACAGGATCAGCGTGGGAAGTCTGTGTGGCTCTTCAACATCAGCGCTGACCCTTTTGAGAGGCATGATCTGACACAAGCTAGGCCTGAGGTGGTAAAGCTTCTGCTGTCAAGGATTGCTGACTATAACCGCACTGCTGTGCCTCCAAAAAACCCACCAGATGATCCAATGGCTGACCCCCAGCTCCATGGAGGCGTCTGGATGCCATGGCTGgcaaagaaagaaggagagggTGCAGACAGAAGAGGAGCGACAGATAGACGCAATTGGAAGCTTAGATTCAAAACCTGCAAAGTGTGCAAACTGAGAGCTCTGTTTAGAAAGATCAGGTCAGAGAATGAGACATGCGCTGTGCTCTGTTACACAACaatgagagaagaggaggaggatggtgaAGATCTCCCTGGAGTAAAGATGCTGTATGGCTACATATGAAACAGTTGTGGAGCTTGTACTTATAACTACATCTAAATCATGAGCCATATTTATACAGTTTGTGTATATCCATTTCATGTTGAATTTAGGCATTGCCtcttataaaacaaaatattggtATATTTTATGCATCTGGTTCTAACAATTCCATTTCTGGGAACGTGAATTCCTCAAAACGTAAATGTAGTTCAAATAACAATGCAATTGGAAATATTCAGTATTTGAAAAATACTGAGTACAATATATGAAAAGCACACATCTGTAAGGGTGTGTTAGTGATGGGACGCAGTCCTGTGTGGTGATGACACGATCCTGCAGGGAGAAGACCAGGTCATGGTGCTGTAAACTGTACAGCTGGCCAGTCTCCAGGCTGTCACCTTCCCTGACCTCATCACGAGTCCGTCATTAAATCTAATCAGTCATGGAGCAATGATGTAGAACTTTCCCTTCAGACACTGGCATTTTCTTCTCTGGAATGGGATTATGATCCCAAAAATAAGGTGATGAATAACAATGTGATTACTAAAAATGGTACATAGATGGAtggagacatttttaaaaactatataaTGATACTCGAGGCTCAATAATCAATTATTATTCCATcagcgtttttttttaatttggcaaataaaaccttttttgtcaaatgtatatttttaaataataaaactttcttTCAGAATTGTGGCAAAGTTGACCATCTTAAAAGGTATTCTGAGAAAAGgtctaaaaatgaaaatgctaaaGACAGAAAGGGTTTCTTATTCTTTAATGTTTAGACTAATTCATACATTTACTGCAGcctatttttaaccatttaatgtGGACAATTATACTAAATGACAGGTTTGTATTTTACAATATGTCAAACCTttcataaaaatgatcaaacatgcttgtaaaaacattatgtacaataatacacattttccactcaaacaGTACTGTAGGAGAAACAGTTTCtttgttctaacaaaaaaaaaagtcatt
>XM_026934574.2
GGCTGAGTTTGCCATCTACTTTAGGCTAATGCAGGAAATGGACTCGTTTTTTTGTTGCATCGATTTCCTCTTGACACCATGGGGGAAAGCTGAGGTACGGTCGATAGCCCCTCTGATGGCCTCTCACACACCGGATGTGCAGCATTTCTCTCACAGatgGAAGGGTATTCTAACCACAGTGGCACAGAGGTAGACAGGATTGCCTGATCTGGATATGACTGTGGTCTGGAACTGGGGTTTGCCCACTTTCTGGGTGGCACTCAGCTGCCTCTCATGCTTGAGACTGGCACTGCCACTCAGTGGAGAGCGCAAGATCTACCCAAAACCACCTACCATGGGTAAAGTCCCTCCACACATCATCTTTGTGATGGTGGACGATCAGGGCTACAATGATGTGGGCTACCATGGCTCGGACATCCACACGCCGGTACTGGACCAGCTGGCTGCTGAAGGGGTGAAGCTGGAGAACTACTATGTCCAGCCAATCTGCTCACCCTCTCGTAGTCAGCTCATGACCGGACGGTATCAAATTCACACTGGCCTTCAGCACTCCATCATTCGCTCACGTCAGCCCCTGTGTCTGCCCCTCGACATGCCCACACTTCCCGAAAGGCTGCGTCAGGCCGGCTACAGCACCCACATGGTGGGAAAGTGGCACCTGGGCTTCTGCCGGCCTGAGTGTCTGCCCACTAGCCGAGGCTTTCAGAGCTTTCTGGGTTCACTGACTGGTAGTGGAGACCATTTTAACTTCCAGAGCTGTGACGGAGCAGAGACTTGTGGCTTTGACCTGCACGATGGTGAACGACCGGCCTGGGAGTTGAGTGGGAACTACTCCACATGGCTGTATGCACAGAGGGTGAAAACAATCTTGCGGACTCATGACCAGCAGAAGCCTCTGTTCCTGTACGTGGCACTCCAGGCTGCTCACACTCCTTTACAGGCTCCTGCTCATCTCCTCCAGCGTTATGCTTCTCTTGGGAATCAGCCACGGCGCCATTACGCCGCCATGCTAAGTGGTGTGGATGAGGCTGTGGGCGAGATTGTGGCGGAGATGCGTAATCGAGGGTACTACCGTAACTCCGTGCTCATCTACTCTTCAGATAACGGAGGCCAGCCTCTGTCGGGGGGCTGCAACTGGCCCCTCCGTGGAGGGAAAGGCTCATACTGGGAGGGGGGAGTGCGAGCGGTGGGCTTTGTTCACAGCCCTctgctgaagatgaagaggaagatcAGTCGTGCTTTAATACATGTCTCAGATTGGTACCCGACCTTGCTGTATCTGGCAGGATCTCCTGAGCCAGACCCTCAGCGCTTAGATGGGTGTAATGTTTGGGGGGCCATCAGTCAGGGCCTACCTAGCCCTCGTACTGAAATCTTGTTTAACATCGACCCTGTTTCGCGGCGACATGGAGAGCATGATCGCAGGCTGTTGATGGAAAACGGCTTTGGGATGTGGGACACAGGAGTGCGTGCAGCAATTCGAGTGGGTGACTGGAAGCTCCTGACAGGGAACGTGGGAGATGGAGACTGGTTCCCCCCACAGATCCTGCCTGGAGCTCCACAGCAGTGGCAGGACATGGAAAAGAGACAGGATCAGCGTGGGAAGTCTGTGTGGCTCTTCAACATCAGCGCTGACCCTTTTGAGAGGCATGATCTGACACAAGCTAGGCCTGAGGTGGTAAAGCTTCTGCTGTCAAGGATTGCTGACTATAACCGCACTGCTGTGCCTCCAAAAAACCCACCAGATGATCCAATGGCTGACCCCCAGCTCCATGGAGGCGTCTGGATGCCATGGCTGgcaaagaaagaaggagagggTGCAGACAGAAGAGGAGCGACAGATAGACGCAATTGGAAGCTTAGATTCAAAACCTGCAAAGTGTGCAAACTGAGAGCTCTGTTTAGAAAGATCAGGTCAGAGAATGAGACATGCGCTGTGCTCTGTTACACAACaatgagagaagaggaggaggatggtgaAGATCTCCCTGGAGTAAAGATGCTGTATGGCTACATATGAAACAGTTGTGGAGCTTGTACTTATAACTACATCTAAATCATGAGCCATATTTATACAGTTTGTGTATATCCATTTCATGTTGAATTTAGGCATTGCCtcttataaaacaaaatattggtATATTTTATGCATCTGGTTCTAACAATTCCATTTCTGGGAACGTGAATTCCTCAAAACGTAAATGTAGTTCAAATAACAATGCAATTGGAAATATTCAGTATTTGAAAAATACTGAGTACAATATATGAAAAGCACACATCTGTAAGGGTGTGTTAGTGATGGGACGCAGTCCTGTGTGGTGATGACACGATCCTGCAGGGAGAAGACCAGGTCATGGTGCTGTAAACTGTACAGCTGGCCAGTCTCCAGGCTGTCACCTTCCCTGACCTCATCACGAGTCCGTCATTAAATCTAATCAGTCATGGAGCAATGATGTAGAACTTTCCCTTCAGACACTGGCATTTTCTTCTCTGGAATGGGATTATGATCCCAAAAATAAGGTGATGAATAACAATGTGATTACTAAAAATGGTACATAGATGGAtggagacatttttaaaaactatataaTGATACTCGAGGCTCAATAATCAATTATTATTCCATcagcgtttttttttaatttggcaaataaaaccttttttgtcaaatgtatatttttaaataataaaactttcttTCAGAATTGTGGCAAAGTTGACCATCTTAAAAGGTATTCTGAGAAAAGgtctaaaaatgaaaatgctaaaGACAGAAAGGGTTTCTTATTCTTTAATGTTTAGACTAATTCATACATTTACTGCAGcctatttttaaccatttaatgtGGACAATTATACTAAATGACAGGTTTGTATTTTACAATATGTCAAACCTttcataaaaatgatcaaacatgcttgtaaaaacattatgtacaataatacacattttccactcaaacaGTACTGTAGGAGAAACAGTTTCtttgttctaacaaaaaaaaaagtcattc

Function

NR:

description
arylsulfatase I-like

GO: NA

KEGG:

id description
K01135 ARSB; arylsulfatase B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934564.2 False 3003 mRNA 0.46 4 10323317 10328227
XM_026934574.2 True 3014 mRNA 0.47 5 10323316 10330221

Neighbor

gene id symbol gene type direction distance location
camk2g2 camk2g,camk2g2,LOC107726985,LOC107666428,LOC108410509,LOC107684098,LOC100707324,LOC106606853,LOC106576966 coding downstream 5121 10255625 ~ 10318195 (-)
synpo2la synpo2l coding downstream 70229 10244156 ~ 10253087 (-)
myoz1a myoz1,LOC107601804,LOC107726982,LOC107743622,LOC107696874,LOC107568548,LOC107666563 coding downstream 82533 10234757 ~ 10240783 (-)
usp54a usp54,usp54a,LOC106606172,LOC106576704,LOC107582762,LOC107698809 coding downstream 90235 10165718 ~ 10233081 (-)
ldb3a ldb3,ldb3a,LOC107743565 coding downstream 194337 10076289 ~ 10128979 (-)
ndst2a ndst2,LOC107666426,LOC107726987,LOC107743572 coding upstream 1512 10331733 ~ 10447727 (-)
zswim8 zswim8,LOC107713895,LOC107743573 coding upstream 119098 10449319 ~ 10488807 (-)
si:ch211-51a6.2 si:ch211-51a6.2,LOC108263106,LOC108438184,LOC106606783,LOC107555315,LOC107565929 coding upstream 162616 10492837 ~ 10511847 (-)
chchd1 chchd1 coding upstream 183730 10513951 ~ 10516957 (-)
mtg1 mtg1,LOC107666383,LOC107565923,LOC107696879 coding upstream 227380 10557601 ~ 10562588 (-)
G43987 NA non-coding downstream 6868 10315725 ~ 10316448 (-)
G43982 NA non-coding downstream 18234 10291067 ~ 10305082 (-)
G43981 NA non-coding downstream 57728 10265356 ~ 10265588 (-)
G43978 NA non-coding downstream 69378 10253724 ~ 10253938 (-)
G43910 NA non-coding downstream 80434 10241941 ~ 10242882 (-)
G44103 NA non-coding upstream 323493 10653714 ~ 10655844 (-)
G44105 NA non-coding upstream 343125 10673346 ~ 10723668 (-)
G44173 NA non-coding upstream 486451 10816672 ~ 10817292 (-)
G44262 NA non-coding upstream 592088 10922309 ~ 10925258 (-)
G44271 NA non-coding upstream 623284 10953505 ~ 10956492 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 161793 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 314755 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1094432 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1469522 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1539518 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 1378393 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1680710 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1814619 12144840 ~ 12152522 (-)
nin nin other upstream 2104888 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 2194415 12524636 ~ 12534215 (-)

Expression


Co-expression Network