vwa11 (LOC108262774)


Basic Information

Item Value
gene id vwa11
gene name LOC108262774
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8932174 ~ 8945247 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934907.2
GTTACGCATTTCTGGAGGAAGTTCAGAGTCAGCGTGGGATCTGTGAAGCTGAAGATGAGGTCATCGGTGTGCGTTATTGCTCTGCTGGTTCTGGTTCTGCCTGGCGTGCAGACATTTATGCCAGTAGGCAGTGGCAACACGCATGTGACCATCACCGGCAAAGCTGTGATGAAAAAGATCCATGAAGTATGTGAGGCGGTGGCTGAGTCAGAAGGAAGACCATTTAAACCATCAGGTTCCTCTGCGGAGGAACTGCTGCGTGCATGTTTGGGTACAGACACTGGTCAGGTGTCAGGTGCCAAGTTCCATGAAGCCCTGAATCAGATTTATATGCAGAATGGACTAGTGGATCGTGACTATGCGTCCAGTAATCCGCATCACTTCAGCAGTGAGGCTTTTAAGGAGGGACATTCTCTGATCAGCCAGGGTGTCGCCTCAGTCAAAGCCAGCATTCGTAAGGATAACTTACAGGCTGCTCGGGAAACACTGGGAAGAGTCTTACACACTCTGCAGGATTTTTACAGCCACACTAACTGGGTGGAGCTGGGTAACAAGAACATATATATCAACCTCATTAAACCAGATCTCACCATAGACAATGTTGCAGatgtggaCACCCCAACCTGCAGTGACTGTGCCAGTGGTACTTGTTCAAACCCTCTGCTGCCCTCCATTTTAAAAGAGAGGAAACTCACATCAGGATACATGGGCCTGTTTTCTCCCAGCAAACCTAAAGgtAAATGCAGTCATGGTGGCAATGCTGATCTTAGCAGTACCCAAAATCCTCGTGGTGGAATCAGCAAAGATGAGCGTCATGCCCATAACGCAGTCCTACACGACACCGCAGTCGCACTGGCAACAGAGGCTACTCTTGAGCTCCTGGAGGATATTCGTGGAGCCGTTGGCAATAAAAATTATCTCCGGATGATGGGCATTGCTCGTACTGCTGTCTTATGCTTTGTAATTGACACAACAGGCAGCATGTCTGATGACATCGCTGAAGCTAAGAGAGTTGCATACCAAATCATTGACACTAAGAAGGGGACAAAGGATGAACCTTCAGAATACATATTGGTCCCATTTAATGACCCGAgctttGGACCACTTATAAGGACAACAAACCCAGACACGATGAAGACTGAGATTTCTAAACTCGATGCTAAGGGTGGTGATGATGAACCAGAAATGTGTTTGTCAGGACTGCAGctGGCTCTGACTGGAGCTCCTGCCTCCTCTCACATTTATGTTTTTACTGACGCCACTGCAAAAGACATGCACTTAGAAAGAACCGTCATCGCCCTCATCCGCAGCACCAAGTCCACAGTCTCATTCTTCATGACAAAAAAGACGAGATCAACAAGATCTTTGAGTGCACAGGGACGCTCAGGTTTCCAGGTGTATTATAACTTGGCTTTGGCTTCTGGAGGTCAAGCTATAGAGGTCACTAAAGCCAATCTGCCCAGTGCTACTGAAATCATCTTAGACACCTCCACATCTGCTTTGGTAACAATCCTGCAGAGAGCCAGGAACCTAGGTCGTGTGGAGAATTTCCCTTTCTTTTTAGATGGATCGTTGTCCAATATTACTGCCTATTTGACAGGAAATAACCTCAAGTTTACTCTGCATAGCCCATCAGGTGTGTCTCAGCCTCACAGCACAAGTAATGGGCCTCTTGCTTCGATTCATACTGTGGGGAACCTGCAGCGGCTTGACTTCAGCAATTCAAATGAAACAGGCCTGTGGCGCATCAGCATGGAATCCACAGAAGCCTACACTATCAAAGTGACGGgtCAAAGTGCAATAACTTTAATTTACAACTTCGTGGAGGAATTCGGTGGACCCCACCCAGGATTTGCTATTATTGATGGTCGCCCACAGAAAGGCTTACCTGCTAAGCTGTTAATGACAATAACTGGACAGAAGGGTGCTGAAGCTCTGAAGCTACAGCAAGTTGCTCTAGTGGAAGTTTCAAATGCCAATGTGGCGAATGGAACCATCAAAGAATTGGGTGATGGAAACTTTCTGGTTACTGTGAATCAAGCTCCAGAAGAGGAATTTGTGGTTATGATAAAAGGAGAAGATAAGACCACCTCAAGCTACTTCCAAAGGCAGACCACAACACAGATGTCCCTGTCTAAAGTCACTGTCAAGGCTGTAGTAGGCACCGCAATGGTGCCAGGAAAAGACTTTATCGTATCTTTTACTGTAACTACTAATGGAACTGGTGGAAAGTTCGTAATCAGTGCTAAGAATGACAAAGATTTTCCTCTCACATATGACACCAGACTTACCGTGAACCCAGGAGGTAATGCTTCAGGCACAGTGACTATCAAACCTCCTGCAAGCACTGCGTCAGGAACCGATGTCACACTGACCGTTCTGGCTGAAGGGCCCGGAGCTGATGATTCTAACTATGCCGTTCTCCGAATGTCTGTCCTCGCCGAGGTGACTGACTTTACTCCTCCAAAGTGTCTGATTGTTGATGCTAGTGCTGTCTGTCCATCTGACTGCTCCCAGTCAAATTGGAACATGTCTGTCAACATCACTGATGGCGGTGGATCTGGTACTGAACACATCTCCACCCAGAAAGGCAGTGGCACACTCTCCTATGAGACTGTGGTGGATGGGGGTATAACCGTAGTCATGGGTTACTACAATGCCTCCTGCTGCTCACCTCATGTAATTGTAGCTGCTGTTGATAAGGAGGGAAATGTAGGGAAATGCACCTACTCTGTCCAGAGGAGCGGAGGGGTTTCCCTCagtctgtctcttcctctctgggCCTGTCTGCTGGTTTCAGCCCTGAGCATATTGCGTGCATAATGTGCTTCCcttgtaatgaaaaataaatagataaaaaagtaCCCATGCAACCACGTAAAaaccaaaatagaaaaaaagtatTCCCCAATGCAATGAAAATGTATAACACCACAGTGTTTAGGGTCAAATGTGAGTGACATACTATCATATTAttgtaaaaatttattttaaataagctACATTTAGTAAATTGGTATGCTGTGCAGTTCTATTTAAACCATGTTTAAACTGAACCTGTAAAATTATCCAGCTAAATGAGTTATCTATGTATTATGTGGAAAACTAAAATTTTGACTATTCAACTGTTCCTTCTGAAAATGGCTTGCTTAAACTCACCCTCACACAAtgcatttgttaatatttaagGCTCTTACTTTTCATGATCTTATGTTCTTTATCACCTGAGAGGACaaaggtgaaataaaagtgtgGTATTGTTTAATCTGAAGTACAGGGGTATTTTTATCACTATCCCATTCCCTCTTACCTCTTGCAAGGTTATTAAATTTCTTACATTCCCAACAGTATACACATCAACCACCAGGAGG

Function

NR:

description
PREDICTED: von Willebrand factor A domain-containing protein 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934907.2 True 3371 mRNA 0.45 17 8932174 8945247

Neighbor

gene id symbol gene type direction distance location
slc43a3a slc43a3 coding upstream 23607 8898290 ~ 8908567 (+)
tmx2b tmx2,LOC108412483,LOC105022872,LOC106602574,LOC106609908 coding upstream 180328 8743828 ~ 8751846 (+)
slc43a1b LOC108262782,LOC108412479 coding upstream 192424 8723908 ~ 8739750 (+)
si:dkey-28b4.8 si:dkey-28b4.8,LOC108262771,LOC108434786,LOC107664566,LOC107551445,LOC107556825 coding upstream 219285 8675584 ~ 8712889 (+)
pold4 pold4 coding upstream 258745 8670798 ~ 8673429 (+)
si:ch73-109d9.2 LOC108262783 coding downstream 10879 8956126 ~ 8961692 (+)
si:ch73-109d9.3 LOC108262807,LOC103132489,LOC106930291,LOC106944652,LOC102224490,LOC103464124,LOC105931504,LOC107393648 coding downstream 18656 8963903 ~ 8967930 (+)
si:ch73-109d9.1 LOC108262808,LOC107556808,LOC107556784 coding downstream 23742 8968989 ~ 8981873 (+)
galnt2 galnt2,LOC107676591,LOC107725470,LOC107666462,LOC107743534 coding downstream 56412 9001659 ~ 9095683 (+)
cog2 cog2,LOC107601846,LOC107666500,LOC107725477,LOC107743537,LOC107552949 coding downstream 184732 9129979 ~ 9143030 (+)
G42792 NA non-coding upstream 61248 8812836 ~ 8870926 (+)
G42783 NA non-coding upstream 161111 8769324 ~ 8771063 (+)
G42782 NA non-coding upstream 164571 8764611 ~ 8767603 (+)
G42763 NA non-coding upstream 272613 8658225 ~ 8659561 (+)
G42714 NA non-coding upstream 281179 8611601 ~ 8650995 (+)
G42833 NA non-coding downstream 8275 8953522 ~ 8954026 (+)
G42848 NA non-coding downstream 67239 9012486 ~ 9015041 (+)
G43137 NA non-coding downstream 279116 9224363 ~ 9224593 (+)
G43186 NA non-coding downstream 398808 9344055 ~ 9347236 (+)
G43330 NA non-coding downstream 543512 9488759 ~ 9488959 (+)
trnak-cuu NA other upstream 462293 8469624 ~ 8469881 (+)
G42685 NA other upstream 465862 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 1260764 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 1302034 7620545 ~ 7630140 (+)
G42075 NA other upstream 1711151 7203950 ~ 7221023 (+)
sprn sprn other downstream 1607012 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 1649327 10594574 ~ 10608704 (+)
dntt dntt other downstream 2154346 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 2737617 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 2761688 11706935 ~ 11707005 (+)

Expression


Co-expression Network