slc43a1b (LOC108262782,LOC108412479)


Basic Information

Item Value
gene id slc43a1b
gene name LOC108262782,LOC108412479
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8723908 ~ 8739750 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934999.2
tgagtgagagccATACGCCTCATGGTTTGCCACTTGTAGTTGTGCAGAAGAAATAACACCAGCAAACAGAATAGGACAAAAAGTCAACGCGGACTCTCTAAActagttattttttattttaacaggaTTTCCCATAACTCTATACACgaaatggCACCGTCTCTCTCACAAGCCTACAGAAGGCGCTGGTGGATGGCCTTGACGGCTATAATTGAGAACCTGCTCTTCTCTGCCGTGTTGCTGGGCTGGGGTTCACTCCTAATCATGCTCAAGGCTGAGGGTTTCTACTCACATTTGTGCATAGAAAATGAGACTGAGCATCATGTTAACAGAAGCATGGAGGAGAGCTCTGTGTGGCCGAGCTGTGATGAGCAAGAGGAGATACTAAATCTTGGCTTTACGATTGGCTCGTTCATCATCAGCGCAGCCACTCTGCCACTGGGAATCCTGATGGACAAGTATGGGCCACGCCCCCTACGGCTGCTGGGCAGTTCCTGTTTTGCCTTCTCAATGATTTTGATTGCTGTGTCAGCATATGATCCTTCAATATTATCGCCTCTCATCTTTATTGCTGTCTCCTTCAATGGCTTTGGAGGAATATGTCTGACCTTTACTTCATTAACGCTCCCCAATATGTTTGGAAATGTGCGTTCCACCATTCTTTCACTCATGATTGGTTCCTATGCTTCCTCTGCAGTTACCTTCCCAGGAGTCAAGctAATCTATGATCTAGGGGTGTCATTCCACTTGATCTTCTGGGTGTGGGCAGGCTTGGCATGCCTCGTCTTCCTCAACTGCTTAGTTAATTGGCCTGTGGAGCCTTTTCCCGCCCCTGAGGAGATCAGCTACATtaaaaaaataaagctgagtGGTGTAGCAATGGATCATAAGGTAACAGGGGATCGCTGTTACAATCATGTAACCACTGTAGGGCAGGAAATGACTAAAAAACACGTTTTGGAGGAGTATAAACAAGGCACTGGAGCAGCTGCACAGATCCAGGGTACCCAGCCATTTCGCCGTTCTGTGTGTTCTGCTATCTTCTTGTGGAGTTTGATCACCATGGCTATGACCCAGCTCCGCATCATATTTTATATGGGAGCCATGAATAAGATGCTggagttcctggttacacacgGTGACCCGAATGCGCCAGAAGAGTTGGTgaaagaagcagaagaacaaGTGAGCTTCTACTCATCTGTCTTCGGCACTATGCAGCTGCTGTGTCTCCTGACCTCCCCTCTTATTGGTTATATCATGGACTGGAAGATGAAAGAGTGCGAGGAGGATAATAGCTTGGTGGATGGAGAGAAAAGGCCACctaagagagacagaaagatccAGAAACTCACCAATGCAGTCAGAGCTTTTTTCTTCACCAACTTCTTGCTGGTGTTGTTTGGCATCACATGCTTGATAGACAACCTTCCTCTCCAGTTGGTGTCCTTTGTTCTTCATACTGTTGTAAGAGGTTTCATTCATTCTTGCTGTGGAGGACTCTATGCTGCAGTGTACCCATCTAACCACTTTGGCACTCTGACGGGCCTGCAGTCTCTACTGAGCGCCCTGTTCGCTCTCCTCCAGCAGCCACTGTTTGTCGTCATGTTGGGTCCATTCGGGGGAGACCCATACtggATCAACTTTGGGCTGCTTATTTTCTCACTGGCTGGCTTCCTGTTGCCAGGATACCTGTTCTACCATCGTAGACAACTCATTAAACAGAAGAAGGTACGGGATCAGGCAGCAACTGGCCAATCAGCAGTTGTTCTTAACCAATCAGCAAATGGCCCTGACAAACTCCACAGTGATGGGCTTGATACAGACGAGATTTAAGAAGGAACAATATAGAAAACTAATTTGTGACAAAGTCAATGCATTCTTGCTTTTCTGAACAACAGACTTGAATACAAACAACCAAAGCATTACACCATGGACATTTTAATGAGACATTTAGGAAAATTTCGATTCAGCCATATgttgggattttaaaaaaagggagcAATTACAGAAAGGTCCAAATTTTCAAATCGCACAATTTGCAAATTCTATGGATGCAGCTTTTAGGTCTTGTGACAGAAGCAGCaggattgtttttatttaaaaaaaattaatagacctcatttatcaagcaaAACATCAGAAAAACATTCGTATtctataaaaaaagattttttacaCACAAGCAGACTCATTAAAGTGAACCTCGACTTGAAGTTTTCATATTGCATAATTGATGtgcataaattaaaatacataagactaaaaaaagaaatggcacccaATAACAGGAGGAAGAGATAGTCTCAGTCTGTGGTAGCCGATGCAGtagctgagctgcattattggaggATTTAACCACATCGTGCTTAGAAGACACTCTTTCACCAATTTAGttgtcattctgtcattttcagctctctgatAGCTTTGCTTTTCATGGTGTTTCGTGTTGTGGGCATCACTAAACATAAATCTGCTGTGCTGTGAATGTGCTTGGTCATTTACAAGAGTGTACAAAGAAACTTGTTACCGAAACCTGTAAATCTGGTGGGAATTTAGGTTtggcctacaaaaacatttacatatcaCATTATGCTGACTGGTTGCTATCACCTTAAGCTACCTCTAGTTAGAGCTCAGTTAAACATTACATCTAATTTGTAGTCTGTTGGTACTGCATGTGTCTGTTTAGAGCTCTTTTTAATAGTAATGTTCTGTTAGTTACTGTAGTTTACACTGAGTGGATGAACGAATGTACATTTGCTTATTATTCTGCTTACTAGTTTGttttaatgcatgttttgtttagCAGTCAGTGCTTCTATTTCTTGTGTCAtgaggtcatgagttcaaaccctAGCACTGTCctggttgggtccttgagcaagacctttaATCCTAAACTGCTCAACTGTATTCTGTCTCAACTATAAGAGACTTTGGATAAAATCCTcagccaaatgagtaaatgcaCATAAATTTATAGTTGTAAAATTATTTGCTAACTGCACTCTGAGCTTGTACATTACTTTGCACTTGAAGTGTATGATTACATTTTCATGTCAGAGTTATAGCACTATAGAAAAATTACTTTAACAGCAGTCAGTCTACTTTAGATGCAGAATTTCATGATATTGGGAGAATAAGATAAGCTAGTCCTATTTATTGACATACTGTAAACGACCTGAATGTTTTTGTGGACTTCCACCTTAAAGTTTGATGAGTTGCACTTCTGCTATCAGAGATTTATTTGTCTGTGAACTTGCTTTTTATGTATTAATCTTTCTCATAACAAATGTTAGACAACAGTCCGGACCTTCAGCAAGAAGGTTACATGGTTATATATATGGATGCACTAGATGGACTtcctttttaatgaaaatgccTAGTGCTGTGGGAGCTGAACAGTGTTGGGTCTGTGATAGTGACTAGAATGTTGtcagttcaaatcccagggTTGCCAGAGAGCCACTGTTTAATCCCCAGCTGCttagccattttttaaaattactttctGCCTCCTTTATAAAGAATTTTGGATAAAACAAGTAAATGCACTGtactttatttgttatttgttgaaAACCTATCAGGGTTTCtatttaaagtttatattttattctgtaatcAGAAGTGCTATTTACAATGTGAGGaaacataaattacatatataaattGATTGCtctatattttcttaaatatttacctttgtaaatattttatgaatagtgggaaaaaaatagagTGAAATATGAATCACAAGCCAGTGTAAAAATTGCAAAGTGTTTTACTGACTTAATGAAAGATGTTCAGTGTCACAGTGTCCATGAcattttttccttattaatttattattgcataaataaacatacaatTACTAACTGATGTAACAAATATGGTTTGTTGTCTCGTCTGAAGCATATACACAAGTAACATACATGAGTAAAAATAAAGGCCTGCAGTGCTCTCATTTatgcaatctctctctctctctctctctctctctctctcacacacaca

Function

NR:

description
PREDICTED: large neutral amino acids transporter small subunit 3-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08228 SLC43A1; MFS transporter, LAT3 family, solute carrier family 43, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934999.2 True 4023 mRNA 0.40 15 8723908 8739750

Neighbor

gene id symbol gene type direction distance location
si:dkey-28b4.8 si:dkey-28b4.8,LOC108262771,LOC108434786,LOC107664566,LOC107551445,LOC107556825 coding upstream 11019 8675584 ~ 8712889 (+)
pold4 pold4 coding upstream 50479 8670798 ~ 8673429 (+)
si:dkey-9i23.6 NA coding upstream 89457 8626903 ~ 8634451 (+)
si:dkey-9i23.8 LOC108262892 coding upstream 100501 8618725 ~ 8623407 (+)
LOC113539337 NA coding upstream 177170 8536839 ~ 8546738 (+)
tmx2b tmx2,LOC108412483,LOC105022872,LOC106602574,LOC106609908 coding downstream 4078 8743828 ~ 8751846 (+)
slc43a3a slc43a3 coding downstream 158540 8898290 ~ 8908567 (+)
vwa11 LOC108262774 coding downstream 192424 8932174 ~ 8945247 (+)
si:ch73-109d9.2 LOC108262783 coding downstream 216376 8956126 ~ 8961692 (+)
si:ch73-109d9.3 LOC108262807,LOC103132489,LOC106930291,LOC106944652,LOC102224490,LOC103464124,LOC105931504,LOC107393648 coding downstream 224153 8963903 ~ 8967930 (+)
G42763 NA non-coding upstream 64347 8658225 ~ 8659561 (+)
G42714 NA non-coding upstream 72913 8611601 ~ 8650995 (+)
G42718 NA non-coding upstream 170526 8552711 ~ 8553382 (+)
G42717 NA non-coding upstream 172024 8551498 ~ 8551884 (+)
LOC117596914 NA non-coding upstream 295267 8425810 ~ 8428641 (+)
G42782 NA non-coding downstream 24861 8764611 ~ 8767603 (+)
G42783 NA non-coding downstream 29574 8769324 ~ 8771063 (+)
G42792 NA non-coding downstream 73086 8812836 ~ 8870926 (+)
G42833 NA non-coding downstream 213772 8953522 ~ 8954026 (+)
G42848 NA non-coding downstream 272736 9012486 ~ 9015041 (+)
trnak-cuu NA other upstream 254027 8469624 ~ 8469881 (+)
G42685 NA other upstream 257596 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 1052498 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 1093768 7620545 ~ 7630140 (+)
G42075 NA other upstream 1502885 7203950 ~ 7221023 (+)
sprn sprn other downstream 1812509 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 1854824 10594574 ~ 10608704 (+)
dntt dntt other downstream 2359843 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 2943114 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 2967185 11706935 ~ 11707005 (+)

Expression


Co-expression Network