si:ch73-109d9.2 (LOC108262783)


Basic Information

Item Value
gene id si:ch73-109d9.2
gene name LOC108262783
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8956126 ~ 8961692 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935011.2
TTCACACAGCCTAGCGTCGCAAACACTGCATtagcattatttttctttcttctcgcTGCATTTCGAGatctctttctgtttatttgtgcaCTATAACATAGAGAAAGGGCTGtagaaatgatttattatttataaatttacctATTCAGGCAGTCAATATATTGTAGGGCATATTATTTTGGCTAGCTATCTGGTTTCTCGATGTTAAggttagctaagctagctacaTATGCTACTAGCAGCTGCTGCTTAATAACGTGTAATAAGATTAGCGAAATTAGAAACATTTCGGAAACAAAACTTGAATACATATGAACGAGGCAAAATTTCAGACCCAGGAGTTTTAACCTGCTATTCAGGTGTATGCTTGAGGGATAAAACGTAAAGAACCAGGAGCACGGCGTTGTCTTGTTTAGCTATCTACTTCAGCTCCAGCTACTCATTCACCCCGAAGATGTCTGAAATCATCCTGACGTTTCAGACCCAGCTGTCTGGAGTCATGGAGACAGTCTTTAAGGCTGCTATATTTGAGATCACCAGGCTGGTGGAGGACAGTTTCCTGGAGGAAGTGTCCCGGAGCCGTGAGCAGGTGGAGTCTCTGAAGAAGAAACTGCAGTGGTCTGAGAGCAAAGGCAGGAGAAGATGTGCTGAGTGTGGCAACACCAAAGTGGCCAGTGAAGAAAGACGAGAGAAATCCTCTCCAGCACAACCAGGTGTGGAAAACGCTCGGATTCTTAAACAGGAGAGAAGCGCGGAGGAGAGCTGGAGAAGCTGTGGAGTTGAGAAGGCAGTTGAACTTTCTGGAATGGTGGAAACAGAACCCGTATCCAGTCCGCTTAACGCCGCAGAGCATGCGGTTCAAGAGGAAGGAAAGCTGGACTGCATGCTTAAATCTGAGTCTGTTCAGACTGCCACTGCTACTGAGCTACAAGATGAGTGGAAACTGAGTACTGAAGtaaCAGAAGGCTCTGACAACTCTGCTCATAGTAAGACTTACAGTGAGCAGGAGCTGCAGCAGATTCAGAATGACTGGAGCTCTGGGTTGGACCAAGCCACCGAGCCTGAGCAAGACATGGACCATATCCAGGGTCTGCTCTATAGAACTCGCTACAACATGGAGGACTTGGGAAGCTATAGCAACCAGGAGCTGGATATGGGAGGGATGAATGGCCTAACAGACCCTCCTCAGAGAGCTGGAGAGGTTTTGGGTTTCGGGGTGCTGGCGGGTTCTTTGCAGACTGACCTGGGTACATCTGAGGAATGCAGAAGACAGCTCAAAAATAAACGAGCAAACAAAGGCTCGTCGTCGTTACACAACACTTCAGATACAGGCGACATGGACTGTTTGCTTATTAATGAGGAGGGCTACTTGCAGGATGTAAGTGGTCTCTCTCAGGCTCCAGGTTCACATGCCGGAGACTCACAAGGACACCCGATATACAATAGAGATACAGTTAATGATGGTACTGATTGCTTTTACAGTGGAGATGCATTCAGCCAGCAACTAGAGCTGAATAATGGATCTGCAGTAATGTTGGGAGACAGAGAGGACAGGGATTATGCTTGCTCTCAGTGTATGATCAGTTTCCCAGACCAGGTTTCCCTTAAAGCGCACTTGAATGGTCACCGTCATCGCAACATCACCACTTCCTACGTCTGCAACCAGTGTGGGAAGAAGTTCCCTCAAGCCTGCAACCTGAAGGTCCACCAACGCGTGCACCAGAGGGAGGGTCTGCACCTGTGCAGCCACTGCGGGAAAGGCTACACGTCCTTCAGTGACCTGCGGAGACACCGTTGCAGCCAGGCTGGAGACAAACCCTACAGCTGCTCGCTGTGTGGGAACAAGTTCAGCCGCCTGTGGAACCTCAAGCTGCACCGGCGCATCCACACGCAGGAGAAACCGCACCGGTGCAGCATGTGTGACAAGAGCTTCACCCGGGCGGACATCCTGAAGGTCCACCAGCGCACCCACACCGGAGAGAGACCGTACTCCTGCAGGGTCTGTGGACTCACCTTTAAACGCCTCGACCATCTCAGATCACACCAGCGCAAACACGGAGCCAATCTGAATAACCACCAGAACTAGTCGTTTGTAGAATAATGAAGTCTATACaacattacttttattttgcaACAAGTGACTAATTTACAGAATTGTAGTACATTTAGTCGAAACACTGCGTCTCAGTGAAGTTTGTAATGGAGGAAGGAGCAGATCAGTGTACTAAAAGAGCAGGTTAGTGTATTAATTGAGcagactgttataaagcagaTATGATGCACTATGGATTACACACAGCTCTCCAGTGGTTTCTTTAGATAGtcttatttattacagttgcaattttcataattttatttgctccaaaaatatttactgcaggtttcacagtgtttttaaaattattgtggtgttttttttttgtgactccTAAAGTAATAGTTTCCAGTAGGCTTTTACAGGGCATAGAACAAGACAGCAACAAAATCGTCCCACCATCAACCAGGTTGTGCCtcggctgatgtgtgtagtgaagCGGGAAGATGTAGCTTGTGCTATAATGACATCAAGGTACACAACACTCCTGTGAAGCACATTAAGTTTAATAAACATACACTTCGAATGAAAACGTAAATGAAAAgacataaaatcataaaatcttTTGTCCCAGGCAGCCATTCAACTGATTTGTCCACGCCTGCTATTTTTTAACTGTATAGTAAGATGTggtataaaacacaatgttcgCATAGCTTGTCTAGAGCTGTTTCATTTATTGGTGTTCATTTTGAACGTTGTACGTAGTGATGTGTTTCTTACATTTCTTACCCTAAAACATACGAAATACCTAAGGAGTTTTCTTTGATTCTTATAAGAAATTCCAAAAGGCTACTATTGTATCTATGATTTTTACAAGTAGATCTAAACACACCGTTTGCCTTTTGGATGTTGGACATCTACTGTAAATCAGTGATTATGTGTAAGCTATGCATATTTGTTCAGCAATATTGTACTCCCAAAGTGTATCGAATCACACAAAAATGGATTGAGGATTAATTTGTAAGTGAAATGTAATCTTTGTAATCTTTGAAAATATTAGCGAGAATCCTAGAAATCAAGCTAAAAGGCAAATCAATTTTCTAACTAGGCTTTGTGAAATATGCTTAAATATTCATAGACAACTCATTCAGCAATGTGAGGACATGAAATTTTTATGCTTGCACTTGTACAAGACAATTTGAGCCTGAAATCGAATTACAGTCCTTTGCCCTGTAGAAGCCTATGAAAGATCATTTCTTGTGTTATTCAACTTTAGAAGCACAAAATGCCCactaaaataattgtaattttcCTTCAATTCCCTCTCGAATATTTTGCCAAGGTAGTTTGTGTCATGGTTTAAGGAAGTGAGTGTTAGTAATTTCTATATGTACTGTTTAATACTGCAGTGCCTCTGTAATTACTTTGTTTTGCAAACTGAGAACTAGTCTCTTATTTAATActattttaataatgaatgttttACTGAGTCATATTTACATACTTAGTTACTTTTATCTGAGatctattattatttctatcaaATATATGCAGATTTATGGTTTGTTAGGATGGCGTTTGTATTGGTCTCCCACGGATGTCTGTGGGGCAGCAACTCACTGGTACATTTTTACAAACTTAAAAAGATATGCCTTTAAGTTATGTGAAGCTGATCGACAGGGAAGTCACTGTGGGGTGAAAAGCGTGTGTAAGCAC

Function

NR:

description
PREDICTED: zinc finger protein 696-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935011.2 True 3757 mRNA 0.42 4 8956126 8961692

Neighbor

gene id symbol gene type direction distance location
vwa11 LOC108262774 coding upstream 10879 8932174 ~ 8945247 (+)
slc43a3a slc43a3 coding upstream 47559 8898290 ~ 8908567 (+)
tmx2b tmx2,LOC108412483,LOC105022872,LOC106602574,LOC106609908 coding upstream 204280 8743828 ~ 8751846 (+)
slc43a1b LOC108262782,LOC108412479 coding upstream 216376 8723908 ~ 8739750 (+)
si:dkey-28b4.8 si:dkey-28b4.8,LOC108262771,LOC108434786,LOC107664566,LOC107551445,LOC107556825 coding upstream 243237 8675584 ~ 8712889 (+)
si:ch73-109d9.3 LOC108262807,LOC103132489,LOC106930291,LOC106944652,LOC102224490,LOC103464124,LOC105931504,LOC107393648 coding downstream 2211 8963903 ~ 8967930 (+)
si:ch73-109d9.1 LOC108262808,LOC107556808,LOC107556784 coding downstream 7297 8968989 ~ 8981873 (+)
galnt2 galnt2,LOC107676591,LOC107725470,LOC107666462,LOC107743534 coding downstream 39967 9001659 ~ 9095683 (+)
cog2 cog2,LOC107601846,LOC107666500,LOC107725477,LOC107743537,LOC107552949 coding downstream 168287 9129979 ~ 9143030 (+)
phactr2 phactr2,LOC107601847,LOC107552951,LOC107666519,LOC107676579 coding downstream 190638 9152330 ~ 9211293 (+)
G42833 NA non-coding upstream 2100 8953522 ~ 8954026 (+)
G42792 NA non-coding upstream 85200 8812836 ~ 8870926 (+)
G42783 NA non-coding upstream 185063 8769324 ~ 8771063 (+)
G42782 NA non-coding upstream 188523 8764611 ~ 8767603 (+)
G42763 NA non-coding upstream 296565 8658225 ~ 8659561 (+)
G42848 NA non-coding downstream 50794 9012486 ~ 9015041 (+)
G43137 NA non-coding downstream 262671 9224363 ~ 9224593 (+)
G43186 NA non-coding downstream 382363 9344055 ~ 9347236 (+)
G43330 NA non-coding downstream 527067 9488759 ~ 9488959 (+)
G43337 NA non-coding downstream 533285 9494977 ~ 9495210 (+)
trnak-cuu NA other upstream 486245 8469624 ~ 8469881 (+)
G42685 NA other upstream 489814 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 1284716 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 1325986 7620545 ~ 7630140 (+)
G42075 NA other upstream 1735103 7203950 ~ 7221023 (+)
sprn sprn other downstream 1590567 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 1632882 10594574 ~ 10608704 (+)
dntt dntt other downstream 2137901 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 2721172 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 2745243 11706935 ~ 11707005 (+)

Expression


Co-expression Network