LOC113539349


Basic Information

Item Value
gene id LOC113539349
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8566561 ~ 8573850 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935066.2
CCAATCCCATGTTTCTGTGTGCTGCAAAAGTTGGCATGCTCTGTcttgttttatctttttaaaatgcCATGCAGTTATCTCGTCTGACAGGTTTTTCAGTGAAAGGAAGTATAATTCTGCACGACAGGGTTCCTCTTGTTTTTCtgatgctttattattattaggactTAGGATAAAGGTTTAGAAGGTTGGCTTACCCAGGGGCTCTACATTCCCCATTTAAACCTCAGAAAAATGCAAGGTTTCTGGATCCTGCTCTTGGCTGTTCAAATTAcgtACTCCTGTGCTACTACGGTATATCATGAAGAACGGATGTATAGCGAACAGCTGAGTATCAGGCTGTCCATGGGAGCTGAGAAATTGCAGTTTACCTCTGTGGATGAAACAGACCACCATGTCCTTTGGTCTAGATTTTCCATAACTAAAAGGGGAACAGTAACAGGAAGAGATGGTAACAGGAAATTTGTTATTCGTTCTCTCACATTTGATGATCAAGGCATCTACACCGTGCTGAACTTATGGAACAGAAAGATGtccattcatttattgaagGTTACCACTAAAAGGAGTTCCCAGAATTGTGTGGCTGGTGAAACATTTAGAATTCCACTCGGTGGCCTTGCGAAGAATGATGCCACACTACATTTTTCAAACGAAGATTTCAACCTCACTCTGGTGGAGCGTGGCTCACCTGTGGGCAACTTACATCCTGAGTACATGGGACGGATCCAGGTGACTAGCAACAGCATTGAGGTGCTCAATGTCAATGTGTCAGATGTGGGCAACTACACACTCAGAGATCGTCTGAATCGCAAAGTCAAGATCATCTCTATGAGATTGGTTGATCATCATCAAGGGATTACTGCAGGTCCTCTGACAGCTCTGCTGCTGTTGCTCGGGATACCACCCTGTGTttgctgctgctgtagaaaGAAGATTTGTAAAAAGAACAGCCAACCCACCACCAACATACCCACTGTGAAGTTCGACAACCAAGTTAATCCACCTGGACCTCCACCAGCCTACATCAATCCGGCAGCTCCTGCAGGCCCCCCACCAGTCTATACTCCTGGCTACCCTGCTGTAGGTGAGAGTACTGTTCATCCTCCGCCTAATCCTACATTTCCTCCTCAACCACCCTACAGCGGACATCCTGCCACATCACCTGCTATGCCCCCTAACCcggaatttaACCCTGAATACAGCAACCAGAATCCCCTTTATCCTCCTGCATCCAGCTTTCCTCCGGCTCAGCCTCCTCAGTGGAGTGGTGCTCCCAGCAATCAACCTGCTCCAGCTggtTTCGCTCCAGTGATGTACAATGCTCCTGCTGGCCCTGAGCCAGTCAAAAGGGAAATATCTCCTATGACTCCACTACTCACACCTCCAGAGCCTGAGGTGGCACAGAATCCTGCCCCGTACTCTGATACTGATGACTCCTCAGACACCGCCGCCCAATTCAAAATCAACAAGGAAAATGACTCAAGCTCCAACATCCTGTAGTTTTTCCTCCCTCTTGactattattttaaacacaaaaaagatgCATCGTTCACAAGAGTTAAATGGCGCTGATGCATATGTCTGTACTATGAAAGGAGGTCATTtgctttttattcaaataagTAATCATTTCTGGATACATAGGATGTGTTCATGGTTTAATGAACTGGTTATAACTTACAGTGAAATAGTATTGGGTGATTCAGGTAAAATGAGACTTAAATTCAatcttaaaatacaataattggaatgaggaaaaatgaagGGCTATAACAGATTAATGAACAGATACATGAAACACCTCACAGTATGGTTGAATTATGCATTGATGtattttatgtgcattaaatggTGTTTTCTAAAGCATTTCCTAAGCAGTGGAATAAGGTGCACTGGGAAATATGGAACTTTACTCAGGCCTAATACTTAGTATGCAGGTGTTTTTTACTTTGTGTACtatattcatataattttagAGAGTGatgtgaatttattattatttaaaaaaaaactttatgttGCTAATgtaagaataaagaaataaattatgaaaCGTTACTTACCttttagttgtgtttttttaaccttgATTTTTACATAATCTGTTCAAATTCAGCTTTAGAAAAGATTGGTTATAAATTTGGGATATTGAAGAATTTTTTAACCctgatgatgtgactgtgtgaagaaataaattatacaatgttACTTAGGCCAACAACTGAATATGTAGTCAGTTGTACTTAGAAATACAGGTTGCATAAAATAATAGCAAATGTATAACACATTGTATTAAAAACAAAGTTCTATTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935066.2 True 2318 mRNA 0.41 9 8566561 8573850

Neighbor

gene id symbol gene type direction distance location
LOC113539365 NA coding downstream 3854 8553457 ~ 8562707 (-)
vps37c LOC108262788,LOC108426122 coding downstream 60835 8494136 ~ 8505726 (-)
tmem132a LOC108262772 coding downstream 87542 8471530 ~ 8479019 (-)
trnam-cau_3 NA coding downstream 97419 8469071 ~ 8469142 (-)
trnam-cau_2 NA coding downstream 98454 8468036 ~ 8468107 (-)
kdm2aa LOC108262769,LOC108434796 coding upstream 8340 8582190 ~ 8604478 (-)
zgc:165520 zgc:165520,LOC108262789,LOC108434798,LOC107746898,LOC107749989,LOC107679874,LOC107552638,LOC107674222 coding upstream 31239 8605089 ~ 8610844 (-)
ndufs8a ndufs8,LOC108434795,LOC105908478,LOC105022883,LOC106602580,LOC107746464,LOC107679876 coding upstream 38211 8612061 ~ 8616849 (-)
tmem187 tmem187 coding upstream 50716 8624566 ~ 8626389 (-)
p2rx3b p2rx3,p2rx3b,LOC107674197,LOC107746906 coding upstream 64567 8638417 ~ 8646104 (-)
G42914 NA non-coding downstream 15206 8551130 ~ 8551355 (-)
G42894 NA non-coding downstream 73257 8493068 ~ 8493304 (-)
G42671 NA non-coding downstream 185846 8380340 ~ 8380715 (-)
G42665 NA non-coding downstream 267117 8299180 ~ 8299444 (-)
G42650 NA non-coding downstream 362156 8204197 ~ 8204405 (-)
G42970 NA non-coding upstream 180301 8754151 ~ 8754896 (-)
G42987 NA non-coding upstream 194138 8767988 ~ 8769186 (-)
G42994 NA non-coding upstream 283408 8857258 ~ 8861508 (-)
G43029 NA non-coding upstream 442352 9016202 ~ 9017636 (-)
G43198 NA non-coding upstream 743578 9317428 ~ 9341922 (-)
LOC113539440 NA other downstream 73578 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 96132 8470358 ~ 8470429 (-)
trnam-cau_4 NA other downstream 96504 8469986 ~ 8470057 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other downstream 350010 8134641 ~ 8216551 (-)
maml3 maml3 other downstream 976898 7438904 ~ 7589663 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 181064 8754914 ~ 8783798 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 227393 8801243 ~ 8853794 (-)
sf3b5 sf3b5 other upstream 651026 9224876 ~ 9228884 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 1426109 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 1562460 10136310 ~ 10161523 (-)

Expression


Co-expression Network