LOC113539365


Basic Information

Item Value
gene id LOC113539365
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8553457 ~ 8562707 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935085.2
CTCACGTGATTGCCGGAATCCACGTGACGCCATTTTCCCGACTAGGTTAGAGTGCAGAGTTTGCGTGAGAAGAATGAGAGATGTTATTACAAACAGATGGTGTAGATTGAAGCAGACTGAGGTTACGTATAATGATTATATATCAAATACACATTACATGCagttactgtcatgtttttattttctaatttttcaacaacaacaacaataacaacaacaacaaaaagtaaaagaaagccGAATGCAGACATCAGTGTCTCCGAAAAGCAAGTGTCTGTGGAGCAGGAGGTCCTCCAGACCACACCCATTTCCTCTGGCCAATCGCCATCTTATCTGCCTGTGCTGTAAATGATGTTGGCTTTCTCTGTTCCTGGAATGATTTACTGTCTGCACATCGGGCTGTATTTCtgatgctttattattattattattattattattattattattattattaggtgaTTGCCTCTAGTGTTGCGCGGTTTAGGATAAAGTTGCTTCCCCCTGGTACTGCACATTGATCAAGGAAAGTAAGCTTTTTCCTGCATCTACTCCAGAAAAACAATCTCAGAAAGATGCAAGGTTTCTGGATCCTGCTCTTAGCAGTTCATATTATGTaCTCCTTTGCTGCTACTACTACGACTAAGACCTATCATGAGAAACTGATGTACGGACAACAGCTTAGTATCAGGCTGCCGACTGGGGCTGAGAATTTGGAGTATGTCTCTGCGGATGAATCACAGAAGAATGTCCTTTGGTCCAGATTTTCCATAACTAAAAGGGGAATAGTAATCGGAAGAGATGATAACAGAAAATTTGAAATTCTTTCTGTCACATTTGAAGATCAGGGAACCTACACTGTGTATAACTTCTGGAACAAAAAGATTTCCATCCATTTATTGAAGGTTATCACTAAAACAGGTATCCAGGACTGTGTGGCTGGTGAAACCTTAAGCATTTCACTGAGTGGTGTTTCGAAGAATAATGCCACACTACATTTTTCAAACGATGATTTCAACCTCACTCTGGTGGAGCGTGGCTCACCTGTGGGCAACTTACATCCTGAGTACATGGGACGGATCCAGGTGACTAGCAACAGCATTGAGGTGCTCAATGTCAATGTGTCAGATGTGGGCAACTACACACTCAGAGATCGTCTAAATCGCAAAGTCAAGATCATCTCTATGAGATTGGTTGatcATCATGAGGGAGTGAATGCAGGTCCTTTAATGGGTCTGCTGATGTTGCTTGGTATACCACCCTGTATCTACTGTTGCTGCAGAAAGAAGATCTGTAATAAGAGAAGccaacacaccaccaccaccaccaccaccactgtgATGTTAGACAACCAAATTAATCCACCTGGACCTCCAGTAGACTACGCCAACTCCACAGCTATTGCGGGCCCCACACCGGTCTATACTCCTGGTTACCCTGCTGTAGGTACTGTTCATCCTCCTCCTAATCCTACATTTCCTCCTCAACCACCCTACAGTGGATATCCTGCCACATCACCTGCTATGCCCCCTAACCCGCCCTTTAACCCCGGATACGCTCCTGCATCTGGGTTTCCTCCAGCTCAGCCTCCTCAATGGAGTGGTGCTCCCTACAACCAATCTGCTCCAGCTggtTTTGCTCCAGTAATGTACAATGCTCCTGCTGGGCCTGAGCCAGTCACAGGGGAAATAACTCCTATGACTCCACTACTCACACCTCCACAACCTGAGGTGGCACAGCCTCCAGCCCCATACGCTGGGGCTAATGTCATTAACTCCTCGGACTCTGCTGCCCAATTCAACATCAACATGGGAAAGGACTCAAGCTCCAACTTCCTGTAGATTCTCCAGCCTCCTTCAGCCTCCTTTACAACCTCACATGCCTGCTAATTTAACCAAAACAGAGAAACCTTATATAACcatgtatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatata
>XM_034303159.1
CTCACGTGATTGCCGGAATCCACGTGACGCCATTTTCCCGACTAGGTTAGAGTGCAGAGTTTGCGTGAGAAGAATGAGAGATGTTATTACAAACAGATGGTGTAGATTGAAGCAGACTGAGGTTACGTATAATGATTATATATCAAATACACATTACATGCagttactgtcatgtttttattttctaatttttcaacaacaacaacaataacaacaacaacaaaaagtaaaagaaagccGAATGCAGACATCAGTGTCTCCGAAAAGCAAGTGTCTGTGGAGCAGGAGGTCCTCCAGACCACACCCATTTCCTCTGGCCAATCGCCATCTTATCTGCCTGTGCTgtgaTTGCCTCTAGTGTTGCGCGGTTTAGGATAAAGTTGCTTCCCCCTGGTACTGCACATTGATCAAGGAAAGTAAGCTTTTTCCTGCATCTACTCCAGAAAAACAATCTCAGAAAGATGCAAGGTTTCTGGATCCTGCTCTTAGCAGTTCATATTATGTaCTCCTTTGCTGCTACTACTACGACTAAGACCTATCATGAGAAACTGATGTACGGACAACAGCTTAGTATCAGGCTGCCGACTGGGGCTGAGAATTTGGAGTATGTCTCTGCGGATGAATCACAGAAGAATGTCCTTTGGTCCAGATTTTCCATAACTAAAAGGGGAATAGTAATCGGAAGAGATGATAACAGAAAATTTGAAATTCTTTCTGTCACATTTGAAGATCAGGGAACCTACACTGTGTATAACTTCTGGAACAAAAAGATTTCCATCCATTTATTGAAGGTTATCACTAAAACAGGTATCCAGGACTGTGTGGCTGGTGAAACCTTAAGCATTTCACTGAGTGGTGTTTCGAAGAATAATGCCACACTACATTTTTCAAACGATGATTTCAACCTCACTCTGGTGGAGCGTGGCTCACCTGTGGGCAACTTACATCCTGAGTACATGGGACGGATCCAGGTGACTAGCAACAGCATTGAGGTGCTCAATGTCAATGTGTCAGATGTGGGCAACTACACACTCAGAGATCGTCTAAATCGCAAAGTCAAGATCATCTCTATGAGATTGGTTGatcATCATGAGGGAGTGAATGCAGGTCCTTTAATGGGTCTGCTGATGTTGCTTGGTATACCACCCTGTATCTACTGTTGCTGCAGAAAGAAGATCTGTAATAAGAGAAGccaacacaccaccaccaccaccaccaccactgtgATGTTAGACAACCAAATTAATCCACCTGGACCTCCAGTAGACTACGCCAACTCCACAGCTATTGCGGGCCCCACACCGGTCTATACTCCTGGTTACCCTGCTGTAGGTACTGTTCATCCTCCTCCTAATCCTACATTTCCTCCTCAACCACCCTACAGTGGATATCCTGCCACATCACCTGCTATGCCCCCTAACCCGCCCTTTAACCCCGGATACGCTCCTGCATCTGGGTTTCCTCCAGCTCAGCCTCCTCAATGGAGTGGTGCTCCCTACAACCAATCTGCTCCAGCTggtTTTGCTCCAGTAATGTACAATGCTCCTGCTGGGCCTGAGCCAGTCACAGGGGAAATAACTCCTATGACTCCACTACTCACACCTCCACAACCTGAGGTGGCACAGCCTCCAGCCCCATACGCTGGGGCTAATGTCATTAACTCCTCGGACTCTGCTGCCCAATTCAACATCAACATGGGAAAGGACTCAAGCTCCAACTTCCTGTAGATTCTCCAGCCTCCTTCAGCCTCCTTTACAACCTCACATGCCTGCTAATTTAACCAAAACAGAGAAACCTTATATAACcatgtatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process

KEGG:

id description
ko03050 Proteasome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935085.2 True 1988 mRNA 0.44 9 8553457 8562707
XM_034303159.1 False 1874 mRNA 0.45 10 8553457 8562707

Neighbor

gene id symbol gene type direction distance location
vps37c LOC108262788,LOC108426122 coding downstream 47731 8494136 ~ 8505726 (-)
tmem132a LOC108262772 coding downstream 74438 8471530 ~ 8479019 (-)
trnam-cau_3 NA coding downstream 84315 8469071 ~ 8469142 (-)
trnam-cau_2 NA coding downstream 85350 8468036 ~ 8468107 (-)
trnam-cau_1 NA coding downstream 86402 8466984 ~ 8467055 (-)
LOC113539349 NA coding upstream 3854 8566561 ~ 8573850 (-)
kdm2aa LOC108262769,LOC108434796 coding upstream 19483 8582190 ~ 8604478 (-)
zgc:165520 zgc:165520,LOC108262789,LOC108434798,LOC107746898,LOC107749989,LOC107679874,LOC107552638,LOC107674222 coding upstream 42382 8605089 ~ 8610844 (-)
ndufs8a ndufs8,LOC108434795,LOC105908478,LOC105022883,LOC106602580,LOC107746464,LOC107679876 coding upstream 49354 8612061 ~ 8616849 (-)
tmem187 tmem187 coding upstream 61859 8624566 ~ 8626389 (-)
G42914 NA non-coding downstream 2102 8551130 ~ 8551355 (-)
G42894 NA non-coding downstream 60153 8493068 ~ 8493304 (-)
G42671 NA non-coding downstream 172742 8380340 ~ 8380715 (-)
G42665 NA non-coding downstream 254013 8299180 ~ 8299444 (-)
G42650 NA non-coding downstream 349052 8204197 ~ 8204405 (-)
G42970 NA non-coding upstream 191444 8754151 ~ 8754896 (-)
G42987 NA non-coding upstream 205281 8767988 ~ 8769186 (-)
G42994 NA non-coding upstream 294551 8857258 ~ 8861508 (-)
G43029 NA non-coding upstream 453495 9016202 ~ 9017636 (-)
G43198 NA non-coding upstream 754721 9317428 ~ 9341922 (-)
LOC113539440 NA other downstream 60474 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 83028 8470358 ~ 8470429 (-)
trnam-cau_4 NA other downstream 83400 8469986 ~ 8470057 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other downstream 336906 8134641 ~ 8216551 (-)
maml3 maml3 other downstream 963794 7438904 ~ 7589663 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 192207 8754914 ~ 8783798 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 238536 8801243 ~ 8853794 (-)
sf3b5 sf3b5 other upstream 662169 9224876 ~ 9228884 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 1437252 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 1573603 10136310 ~ 10161523 (-)

Expression


Co-expression Network