vps37c (LOC108262788,LOC108426122)


Basic Information

Item Value
gene id vps37c
gene name LOC108262788,LOC108426122
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8494136 ~ 8505726 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935138.2
cTGAAAAGCTGTCTGTATGCCAGTGTCTTTGGGCTGTTGGTGGGATTGAGTGCCATTGTTGTTTATGGCTACGCAGTCAATGACATAAAATCTGTTAAAACCTGCGAATCTGAAGAGTTTACAGAATTTATTTGTCCAAAACAAGAAGTCATTGAATATTTCAAATCAATCTCAGCACTGCTTTTGGTTTATGACATGGGAGCACTCACTCTTCAAGGCCTCCTTTTATTTTCAGCTATGAAAGGTttgaaaacaaactgaaaaaaaacaagcctatAATACACCAGTATAATAACATATATACTTGCATAACTGAGAAATTGTAAAATGTGATGTATAACTCATAAATTgtaatgtttgtttatatactttttaatttcatacttctttttaataaaaatgaagtttTGAAAAGTAAGCATGGTGCTGCAAACTGTAGTGTATGTAAAAAAAGTTCTGCATTTTGTGTTAAGTGGACACTACATATGAAAGATGCCACTTTTTAGACATACTTTACACATAGGCTTCATTGTGATTATATAactttgattatatttattatataactaTTTTAGTTGTTGGGATATTTATTTGATAAATCATACCACTAGATATAATAACCTAATATAGCATGAAGATGTATTTTCAAGATGCTTTTCGGTACTCATGTTTCTAAGCAAGGTAGTTAAGATATTTTGTATTggtactgtaaatatttatattgtattcaGGTTTTACGAGTACTTAAAATGACACAGAGCCTGTTTTAGGAATTTGGAGGTCATGTCAAATAGATTTTATACTGtcatatactatactatactatactatactatactatactataatataatataatataatataatataatatatgagaCAGTACAGAAGCTATGCACAGTACCTACATAAAATGCATTCAGTATAATGCTGTAAGTGTAAGGCAGAACAACAGAAGGCAGAACAACAGAAGAATAATAAGGATAAGCTAGTAGATGCACATTGTAAAATGGTAAATGATAACGTCAAACAgtggaatggggaaaaatgttatCTTAATGACTTTGACCATTggaacagtctctagagtttacacacaatggtgcgaaaaacaaaaaatctccACTGAGCGGCAGTTcagtgggtggaaacgccttgttgatgagtgaagtcagaggaaaatggccagacttaATGCATGCTATTCAGGCTTACTGGCTTTTTGCCAAGGTTTGGCgagttgtgtgttctgagaaaTTGTAGGCTTGCTGtaagctcaaaccagtctggccattccgCATTGGCCTCTTTCATCAGCAaggtatttttttgtttttgcgcCATTCTGTGTACATTCTAGAAACTGTTCTATGTGACAGtctcaggaaatcagcagtatctgaaataccagccatctggcactaacaaccatgccactgtcaaaatcactgagattacattatttgcccccattctgatgtttgatgtaaacactaactgaagctcttggcctgtatgtgcatgattttatagcattccgctgctgccacatgattatctgattggataacttcatgcaggtgttcctattaaagtggccagtgagtgtatgtcaATGTATATGACAATACatgtcaatttaaaaaaaagccttttaaaCCACACTCACTTGTGTGGAAACATGAAATCACTCTGTTTTTATAACCATTTTCCTCAGAATGAGTTTTTACCATATTCAGAGCCAACAATATCAGTGTCTAGAtgacctgcattcatgaaattttacatgcgctttaatgtcatattattgattatttttgatTAGTGATCATTTTTGGATTTATGTTAGATTTCCTactgaaaatgcaaaaaaatgtatttttttatataacaaccTATGGTGTTTTCTtggttaaacaataaagaaatatttctaCAAAATTTACTGTAAAGGTCTTTATCTTTACAgggaaattaacattttaattctaacatcatCCAAACAGTAGATTTTTGGCTTTATATAAAGCATGCAAATTGACATGTTTAATGAGACAAGGCCTAAtttgcagaaataaatgtaactttttaaaaaaaggtctaacaaaaaaattgtaagaatatcagcaagCAGATGGCAAAGACTGATAGTGGTATTTACTTAATCTTTTTGTTACatccactgtttttttgtttgtttgtttgtttgttttgttttgtttttaacgaTTATACTCAGTCTACTTTTCCTGTGATCTCATCATGAGCAGCAGTATAAAGAGTTTATTGAAGAGTAAACATAACGTATACAAAAACAGTTGTAATGGAAGTAAGCCACTGTGCTGCGCCTCCCCGCTGCCAGGGAAAGAATGGAACATTCCTGTCACTTTGGGGTTTCCCATGAGTCAGCTGAACAACGGACGATACCACTAGCGAACAGCAGTTAGTTACAAATTCAACATGTTACCATTACCTCTTGCGAAATGTATCATATTATATGTTAAACtagtaaatattgtaattaaatGACGATATTCctttaaacagtgtttttttttgtttgttttaaatccaACTTGTGTCGTGTAGCATTTCCACCAACCCCCCTTGACAGAATTGAGAGTGGATTATACCAAAATATGGCGGCGGTATCTGTCAGCAAGAAGTGAAACTTTCGCTTAAGAGAGTGAATATTTCCTATTAAATGCAGCATTTCCTGGATGCTGTCGTTGTTTCGACGTTTCCGTCGTTTTACCAGAAACGAGATTTCGTGTACTTTTTGTGGTCGTCTTTCATTCGACGTTTTTTCCTTCTATATTTGCTCTTGGCTGCTAGCTGTTTAGCTGACTGAAAAGGCTCTTTTCGATAAATAGAGCAAAGTGCCGTGCAGACAGCGACAAACATTAGCGGATATAACCGGCTTCATTGCAGATTCTTGGGTGATTTGAAGGTTAAATCCGCGTGAAACATTTACAGAGACgtatgtttattagttttatttacaaCCAAGGGCAGCGCTTCCGTGTTCATTTTACGTCACTGGCTTCCGATTCAAGTCGGATGTTTGTCGATGTGCTCTCTAACCCGAGGAATTTGATTTGCTAGCACCTTctgtaCTGGCAAATCAATGGAGAAGCTTCAGGATCTCAGACAATCCGAGCTCCAGGATTTGCTGGATAACTCGGAGCGGGTGGAGTCAATGGCACTGGAGTCAGATGAGATCCAGAACATTCAACTGGAAAGGGAAATGGCTCTGGCTTCCAACCGCAGCCTGGCTGAACAGAACCTCGACATGAAACCACGactggagagagatagagaacgGCTGGTGGCGAAATATAATGAACTGGAGGAAGTGAGGGAGAGATACAAACAGCACTGTGCTCTCAGAGATGAGATTATGGGCCAGGTGTCTCCTGAGGGGTTATCATCTCGTCTACAGGCAGAGGGCGCCAACACAGAGGCAGAGTCAGAGGTTCTAGCTGATGAGTTTCTAGAGGGTTCCTTATCACTAGACTCCTTCCTTGAGCGCTTCCACTCTCTCCGCTGCCTTGCTCACAGAAGACGTGTGTGCGTTGAGAAGCTGCAAGAGATTCTGCGCCAGAAGAACCAAGGAGCCGGAGAGTCTGGCGTGACACCAGAGCCGTGCTCCAATCCGGAGGCCGGCTCCGTGTCACCGTGGCAACAGCAGCAACCCCAGCAACAGCCACAGCAGAAACCCAGCGTGAGCGCCAACCCGCCCAACTGTGCCCTACCATACACTCCATACCCCGTTTCTCCTCCTAGCCAGCCCTGTTCGGCCTCTACAGCTGCCCCCTCCAACCCCTCTGGTGCTTTTCAGCCCTACTCAAACCAGGCCGCAGCTTTTACTCCATCCTCAGGCTACCCCGCTGCCCGGCCTGCCTTTGCCCCATCCACATGCCCGTACCCCACCCAACCTGCATTTCCAGCTCCCCAAGGTCCTCCGTTTGGGCAGTTTGGCCCTAGTAATGCACCCTACCCCAGCCCATACCCTTATGGAGGTTATAGTTACCCCATAGGCTCCCATATGCCCCCTTCTCAGTCACCTACAGGTAGGCCGCTTTATAGGCCAGGGTTTGGTGTACCACAGCCGTACTCCTGAACCACAGtgttcccctctctctctctttctctctctcagtgtctcttaTTCCCTCACCTctgctctgtctctttcctccCTCCTCTTTTGCCTCCAAATGACACTGAGATTTGTGGTTTGCATACCCCCAAattttctcttcctgtttgaGGCTTGcacaaaatgtttgaaattcGGTTACCACATGTTTTTCTCCCCCCCCCTGACACCTCAGTGAAAGACTTGCTCCAAAAATCCGTCAGAGACCAAAATGGCCGTCAGTCACCTTTGGACTTGCTTCAGTTCCTGGCTGTTCTAGCATGTTTCCAGATCGGAGATTTCAAATTGTTGATTGTGTTTATTGAATTTGCCATTATGTTTCAATTCAGTGGAATTGTGTTGCTGTTTGGCCTCATATGGATATGGTCCATAATTCAGAAtcataactttttatttaactaGTAATGAGAAACGTTACACTACTTAATCATAAGAATCATTTATTACCTGGCTACTTTCTGGTTTATGTAgccgcttttttttttttttccccctctgtccAGAAAATAACAGCACTACCATTCACTGAAGACACAAACTACTTTACAAACTGTCTACATGTTTAACACCACATTTCCAGGCATTTTATTTGGGTGGAAATATTTGACCCCTGAATCATATTGTCTGTACCTTGTTACGAGAGTAGTCAGTTCTGTATTTAATGCAACGTTGCACCTGCTCCTTCACTCCCCTCATTCATCTCCTTGTCTGCtgaactgacttttttttcctctcctctccttctctctttcttaacctttttcttttttttcatttttgttttgttcacacTTCCCTTGCTCCATGTACAGCTTGTTGACTGAGAACAATGAGAATTACATGAAGGGACTGTTTAAATACTCTAGTGAAGACTGTGTGATTTGTAtaaacagatatgaataataatggtaaaaaaaaaaaaaaaaacaaggggaatataatataaacatatcttTATCTGCTATAGCACAGTATATGGGGTGGCGTTTGAGGCAAAGGGAACCATAACACAGCACAGTGAGCACGCGAGGGAGTTTGAGCTGCATAACATCCTTTGGAGTTTACATACAGCATTCTGTAACCATCTTGACACTGAAAATGTTCTAAAATGAAGATTGCGCAGACAGATTAATCTTGTAAGCCCATATTTGTCTGTTACAATGGTAATAAGTATTATTTGTCTGTTACAATGGTAATGGTAATAAGGGCTTAATGAATTcaattataaatgttattaataacCGGCAAAGCTCTGGTTTACCTGACATGGATATAAATGAAGGCTGTATGTATCTGTGGAGGTTGTATGTAGTTACCTGCAGCACCCCCGCCTTTTGGAGTGTGTATCTTCTATATGTTGACTGGTAGAATGACCGTTTTGAATCACATTTGCACTCCACAATAACAGCTTCCGTCCCTACGGTAAAAGGGCCTGGGGGCGAGCCTGCGAACCGTCAGCTTTAGAAAAGATGCTCGGGGTAAActgttgaattttattttatcagacattatttttaacttacaagcaatcaaaaaaaaaaatagaggcatCCCCAATAAAGCCTCAGGTGGCTTTAATGAATTCATGAACTCAGTAATTAAGACTCAGGTTCGGAGCAAAACCCTGTCATCTATGGCCCGTCCTCAGGACCTGAAACGAGGGAGAAAGCTGGCATAAAATAAAGGAGGGGAAATGGGGTGTTTATTTAGTCGCACACTGTGATGTGCAGCATTAGAGGAAAGGCATTCTGTGGGATTGATGGTGATGACTGTAGCCTGttaagtgtattatttttatttttatttcctttggtgtgaatattaaacactgaagtTGATCTA

Function

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 37C-like

GO: NA

KEGG:

id description
K12185 VPS37; ESCRT-I complex subunit VPS37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935138.2 True 6006 mRNA 0.40 6 8494136 8505726

Neighbor

gene id symbol gene type direction distance location
tmem132a LOC108262772 coding downstream 15117 8471530 ~ 8479019 (-)
trnam-cau_3 NA coding downstream 24994 8469071 ~ 8469142 (-)
trnam-cau_2 NA coding downstream 26029 8468036 ~ 8468107 (-)
trnam-cau_1 NA coding downstream 27081 8466984 ~ 8467055 (-)
htt htt,LOC107679870 coding downstream 224019 8220599 ~ 8270117 (-)
LOC113539365 NA coding upstream 47731 8553457 ~ 8562707 (-)
LOC113539349 NA coding upstream 60835 8566561 ~ 8573850 (-)
kdm2aa LOC108262769,LOC108434796 coding upstream 76464 8582190 ~ 8604478 (-)
zgc:165520 zgc:165520,LOC108262789,LOC108434798,LOC107746898,LOC107749989,LOC107679874,LOC107552638,LOC107674222 coding upstream 99363 8605089 ~ 8610844 (-)
ndufs8a ndufs8,LOC108434795,LOC105908478,LOC105022883,LOC106602580,LOC107746464,LOC107679876 coding upstream 106335 8612061 ~ 8616849 (-)
G42894 NA non-coding downstream 832 8493068 ~ 8493304 (-)
G42671 NA non-coding downstream 113421 8380340 ~ 8380715 (-)
G42665 NA non-coding downstream 194692 8299180 ~ 8299444 (-)
G42650 NA non-coding downstream 289731 8204197 ~ 8204405 (-)
G42642 NA non-coding downstream 303860 8189735 ~ 8190276 (-)
G42914 NA non-coding upstream 45404 8551130 ~ 8551355 (-)
G42970 NA non-coding upstream 248425 8754151 ~ 8754896 (-)
G42987 NA non-coding upstream 262262 8767988 ~ 8769186 (-)
G42994 NA non-coding upstream 351532 8857258 ~ 8861508 (-)
G43029 NA non-coding upstream 510476 9016202 ~ 9017636 (-)
LOC113539440 NA other downstream 1153 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 23707 8470358 ~ 8470429 (-)
trnam-cau_4 NA other downstream 24079 8469986 ~ 8470057 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other downstream 277585 8134641 ~ 8216551 (-)
maml3 maml3 other downstream 904473 7438904 ~ 7589663 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 249188 8754914 ~ 8783798 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 295517 8801243 ~ 8853794 (-)
sf3b5 sf3b5 other upstream 719150 9224876 ~ 9228884 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 1494233 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 1630584 10136310 ~ 10161523 (-)

Expression


Co-expression Network