zgc:165520 (zgc:165520,LOC108262789,LOC108434798,LOC107746898,LOC107749989,LOC107679874,LOC107552638,LOC107674222)


Basic Information

Item Value
gene id zgc:165520
gene name zgc:165520,LOC108262789,LOC108434798,LOC107746898,LOC107749989,LOC107679874,LOC107552638,LOC107674222
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8605089 ~ 8610844 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935173.2
ttatttctgattttgcaATGAAAATACACTGCCTAAAATTTAAGCATTAAATCTATTTGAAATTATTCAGAATATGTGGTTCCTCTTAATGATCAGTTTTCCAGTCTGACAGCagatttttctttccattttgctTGAAACTTacattaaattgtttaaattgaAAAGCCTTAGCACCAAGATGAAGGACCGACTGGCACAGCTGAAGGAGAAAACAGACCAAGCACCTGATGATGTGGAGATCCAGGtggaaaataaagaatttatgGATGAGTTCTTTGCTCAGATTGAAGAGATCCGCACCAGTATTGAGAAGATTGATGAGAATGTGACTGAGATAAAGCGCCTGTATTCTCTTATCCTCTCTGCACCTACCTCAGACCAAAAGACACAAGACGACCTGGAAGCCATCACCAATGAAATCAAGAAATTAGCCAACAACGTTCGCAACAAACTCAAAAGCATCGAGCAGAGTTTGGAGTCAAATGCAGAGGAGAGAGTTTCAGCCGATATGCGGATAAAGAAATCTCAGCACGCTGTCCTAGCAAGAAAGTTTGTGGAGGTTATGACCAGGTACAATGAAGCACAAGTAGAATTCAGAGACAAGAGCAAAGGGCGGATCCAGAGACAGCTAGAGATCACGGGTAAAACCACCACTgatgaggagctggaggagatgCTGGACGGTGGCAATGCTGCTGTCTTCAcagcagggATCGTGGACTCGGCCATCTCCAAGCAGGCCTTGAGTGAAATTGAAGCGAGACACAAAGACATCATGCGACTGGAGAGCAGCATTAAGGAGCTGCATGACATGTTTGTGGACATTGCCATGCTAGTGGAGAATCAGGGAAGCATAATTGACAGGATTGAAAGCAACATGGACCAGTCTGTGGGCTTCGTGGAACGAGCAGTGGCTGACACCAAAAAAGCAGCCAAGTTCCAACAGGAAGCCCGGAGGAAACAGATGATGATCACATTGTGTTGCATCATTCTTGCGGTCATCATTGGCTCCCTCGTGTACAGCTGGTTGAAGTGAAGAGGTCCAAGAGCCAACTCAGAGTGGAGTCTTAGACATCAATCAAGAGATGATGCTGCAGACTCACAGGCTTTCTTTGCCTTTCCTCTCTTTTATATTTCCATTGTTTGtccttgttttcatttttttttttgttatcctAAATGTTCAACTTACTTTACTTGCTCTTTGTAGGCCTACATAACAGTCTGCGATGTGTAATCCCTTTTTGTGAAGagtcaggtttgttttttttttgtgtaggtAGACCAGAAtaatagtatttattttactgaaagcacaaattctgagttttaACTGATGCACTGCCATTATC

Function

NR:

description
PREDICTED: syntaxin-3-like

GO: NA

KEGG:

id description
K08486 STX1B_2_3; syntaxin 1B/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935173.2 True 1355 mRNA 0.42 11 8605089 8610844

Neighbor

gene id symbol gene type direction distance location
kdm2aa LOC108262769,LOC108434796 coding downstream 611 8582190 ~ 8604478 (-)
LOC113539349 NA coding downstream 31239 8566561 ~ 8573850 (-)
LOC113539365 NA coding downstream 42382 8553457 ~ 8562707 (-)
vps37c LOC108262788,LOC108426122 coding downstream 99363 8494136 ~ 8505726 (-)
tmem132a LOC108262772 coding downstream 126070 8471530 ~ 8479019 (-)
ndufs8a ndufs8,LOC108434795,LOC105908478,LOC105022883,LOC106602580,LOC107746464,LOC107679876 coding upstream 1217 8612061 ~ 8616849 (-)
tmem187 tmem187 coding upstream 13722 8624566 ~ 8626389 (-)
p2rx3b p2rx3,p2rx3b,LOC107674197,LOC107746906 coding upstream 27573 8638417 ~ 8646104 (-)
ssrp1b ssrp1b,ssrp1,LOC108262778,LOC107664573,LOC107746478 coding upstream 43318 8654162 ~ 8675424 (-)
med19b med19b,LOC108412480,LOC103047628,LOC108262795,LOC107551486,LOC107730510 coding upstream 128656 8739500 ~ 8743565 (-)
G42914 NA non-coding downstream 53734 8551130 ~ 8551355 (-)
G42894 NA non-coding downstream 111785 8493068 ~ 8493304 (-)
G42671 NA non-coding downstream 224374 8380340 ~ 8380715 (-)
G42665 NA non-coding downstream 305645 8299180 ~ 8299444 (-)
G42650 NA non-coding downstream 400684 8204197 ~ 8204405 (-)
G42970 NA non-coding upstream 143307 8754151 ~ 8754896 (-)
G42987 NA non-coding upstream 157144 8767988 ~ 8769186 (-)
G42994 NA non-coding upstream 246414 8857258 ~ 8861508 (-)
G43029 NA non-coding upstream 405358 9016202 ~ 9017636 (-)
G43198 NA non-coding upstream 706584 9317428 ~ 9341922 (-)
LOC113539440 NA other downstream 112106 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 134660 8470358 ~ 8470429 (-)
trnam-cau_4 NA other downstream 135032 8469986 ~ 8470057 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other downstream 388538 8134641 ~ 8216551 (-)
maml3 maml3 other downstream 1015426 7438904 ~ 7589663 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 144070 8754914 ~ 8783798 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 190399 8801243 ~ 8853794 (-)
sf3b5 sf3b5 other upstream 614032 9224876 ~ 9228884 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 1389115 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 1525466 10136310 ~ 10161523 (-)

Expression


Co-expression Network