XLOC_005321


Basic Information

Item Value
gene id XLOC_005321
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20314995 ~ 20334709 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011121
CACGAATGAAATTAAAGGACTCTCTTGTTTGCAGCTATGATGAGCATGTACTTCAGTGATAGGGATGGGTGCTGGCACTGGCTCTGATAAACCCTCCTATCAGTGACTCAAGCTGTGGTCTGTGAGAGGGTGTAAGCAGAAGAGCAGTGTAATCACCCGTGTCAGCATTGCCCTGCCCTCCTGCTGGCACACGTTACACATGACTCAGCTAAAACTCAACCATTGCCTTTATTTAATCCACTTCCTAATTAATGTGCTGTCTGATCAGGTCCATTCTTAGAGATTATGTGTGTTACCTACATATTGATTGgtttattgaattaattatttgctgttgttgtatttttaaatgatgtttgtattttttaatagcgTATGATTGTAATATCGTCCTCAAGGGTCGACCTCAAGTGCGATAGCATTATCATCATGTTGTGTTAATTAAACACCAACTGGCAAAAGGCCTGGAGAAGTGGAGCAGCGGAGATTGCCAGTACTGGTTAAGCGGGATGCAGACACAGAAgccacaaaaacaacatttaaccTCAAATCTCTAATACACTGTGACAGATGACTGACAATAAAGAGGAACAGACTCAGTGGCTTATGTATAAGCTATAACAATGTCACAAAATAAACTGAAGCACATGTGTCTGACAATTCAGTTTTAAACATGCGCTTCACTGTTGCTTTGTGAATAGGCACTCTTGGAGGACTTTAGATCTCTTACTGATCTGCCATATCTCCAGAGTTTCGGGTGTtggcctcatttacatttaagTCCacgatgtttaaaaaaaaaacactggctgTCACAACTAATTTTTAATACCATTACTCATTTGCAACTGAAATTTAACATGCACAAGTTCACCTTTCTATTCAGTGGTAATTTAAATTGGCTTGCTGTCCTCTGAGAAGTCTCAATCCTAAGGCTCAACTTGAATTGAACACCGGCAGTATTAGAAAGAGAATGGAATAGAATGGAAGTGCATAGTGACTAATGCTAGAGGCTGTGCTCTTtagcatgctttttttttaaagcaccaaTTTCCCATACTTGACATGTCCGTTTGAATCCCACTTTAGAGCAGTAGAAGTAGACCAAGAGGGGTTACATTACAGTTAAAGTTGGAGTTAAAGTTTAGTGGTTGAATGTGATAGAAGCCAGCTATGGTGCTATACGTCTTTAATCTTTTTGTTAGTTCAGCAACTTCCATGCTGTAGACGCATATTTGAGTGCTGTAAAAGTAGAACCAGGGAATTtatgttggtgccgtgacccacatgagagtgaggtttagtggggtgagtgtaacagaggccatgCAGCTACAGTAGTATACACTTTGGAAGTAAACCTTATTTTGACTGTGGAAGTGTGGGAAAACTCTTtaaatttagttgtttttagtgAGCCAAACTAAAGACCCATTTGAATCTCGAATGGTAATTTGGTGATTtgaatgggagtgaggtttagagaGGTGAGTGTAGCATAGGCAAGCTGATCTGTTGGTAAACCTAACTCCCTTGGCTTCAAGAGGCACAAACTGACAGCAGGGTTACAGTGTTTAGTGTTTTTGCTAATGTGTCAGGCTTCCATGCTGGAGACACCTTAAGTTCAGCTTGGAGTGGTGGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011121 True 1643 lncRNA 0.40 2 20314995 20334709

Neighbor

gene id symbol gene type direction distance location
XLOC_005320 rhbdf1b coding downstream 11557 20227395 ~ 20303438 (-)
XLOC_005319 CR352324.1 coding downstream 125709 20189169 ~ 20189286 (-)
XLOC_005318 NA coding downstream 194284 20056971 ~ 20120711 (-)
XLOC_005317 shisa9a coding downstream 449410 19792281 ~ 19865585 (-)
XLOC_005316 maff coding downstream 968317 19340786 ~ 19346678 (-)
XLOC_005322 hbbe3 coding upstream 4704 20339413 ~ 20340543 (-)
XLOC_005323 hbbe2 coding upstream 15156 20349865 ~ 20350629 (-)
XLOC_005324 aqp8a.2 coding upstream 19982 20354691 ~ 20362061 (-)
XLOC_005325 aqp8a.1 coding upstream 31400 20366109 ~ 20373058 (-)
XLOC_005326 lcmt1 coding upstream 43667 20378376 ~ 20409794 (-)
XLOC_005303 AL772266.1 non-coding downstream 1576466 18738413 ~ 18738529 (-)
XLOC_005298 NA non-coding downstream 1860588 18453207 ~ 18454407 (-)
XLOC_005295 NA non-coding downstream 2087265 18224534 ~ 18227730 (-)
XLOC_005327 SLC16A6 non-coding upstream 240931 20575640 ~ 20584439 (-)
XLOC_005332 CR753823.1 non-coding upstream 1235074 21569783 ~ 21569899 (-)
XLOC_005335 NA non-coding upstream 1829321 22164030 ~ 22220870 (-)
XLOC_005337 NA non-coding upstream 1935791 22270500 ~ 22280703 (-)
XLOC_005340 NA non-coding upstream 2108931 22443640 ~ 22445101 (-)

Expression


Co-expression Network