rrh (rrh)


Basic Information

Item Value
gene id rrh
gene name rrh
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20205863 ~ 20209292 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935353.2
TTACCTCAGACACACAGTAACCCTAGCAACGTTCACAGGGCCTAAACCCCCAACCCTCATCTCCAAacctttccctctctcctctctctttcgctcCTCACTGCCTGCTGGATATGCTGGAGGAAGTTCCATTCATCCATGTGAACTGGGCTGGACAGTAATTACGTCCAACTAGTGCTTTTGGTGTGGGATTGAGTGTATTTTGGAGACATGGGACCCGAAATCCTAAATTCCTCAAACGAAACCGTCAGCTATGGTGGGAAAAGTGCCTTCTCGCAAATGGAACACAACATTGTTGCGGGATACCTCATTGCTGCATgtGTGATCAGTTTGTCCAGTAACCTTGTGGTGCTGATTATGTTTGTAAAGTTTAAAGAACTGCGTAATGCCACTAATGCCATCATCATTAATCTGGCTTTCACTGATATTGGAGTAGCAGGCATTGGTTACCCCATGTCTGCTGCTTCTGACCTGCATGGCAGCTGGAAATTCGGGTACACTGGTTGCCAGATCTACGCTGCCCTGAATATATTCTTTGGGATGGCCAGCATTGGACTGCTTACTGTGGTAGCCATTGATAGATATATAAGTATCTGCAGACCCGATATAGGCCAGAAGATGACaatacactcatatacactgTTGGTTATGGCTGCATGGCTCAATGCAGTGTTCTGGTCTGCCATGCCAGTTGTGGGTTGGGCTGGATATGCTCCTGATCCAACTGGAGCCACATGCACCATCAACTGGAGGAACAATGATGCGTCCTTTATCTCCTACACGATGGCTGTGATTTCCGTTAACTTTATCATACCACTGTCTGTCATGTTCTATTGCTATTACAATGTTTCAGTCACCATGAAGAGGTACAAGGCAAGCAACTGCCTGGACAGCATTAACATCGATTGGTCAGATCAGATAGATGTAACTAAGATGTCTATTGTGATGATTGTGATGTTCTTGGTGGCCTGGTCTCCATACGCTATTGTATGTCTTTGGGCATCATTTGGTGATCCTAGAAAGATTCCTGCACCGATGGCCATCATCGCACCACTCTTTGCAAAGTCTTCCACCTTCTACAATCCCTGCATCTATGTCATTGCCAACAGGAAGTTCAGAAGAGCCATTGTGGGGATGCTGCGATGCCAGACCCGACGACATGTCACCATCAACAACCAAGTTCCTATGACGATCTCACAGTTGCCTCTTAACCAGTGACCTAATAATATTGACAGAGCCCATCATGTTCTCTGCTCAGCGCTGGGTGCTGATATTTccttgcattgttacagcagcatagGATATGAAGTAGACTGTTTGCTACTAGATGTAAGTTAAACATTGCTTTATGTGAAGAGTGTTGTGAAACCTGAGTTTCAGAGTGGAAATTAAGTTTGCCTCATCACCATAGAAATTCCAGTAAGGTCTTGacacaaaagaaataaaattatttgtaatcaAA

Function

symbol description
rrh Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gut; heart; and integument. Orthologous to human RRH (retinal pigment epithelium-derived rhodopsin homolog).

NR:

description
visual pigment-like receptor peropsin

GO: NA

KEGG:

id description
K04253 RRH; visual pigment-like receptor peropsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935353.2 True 1462 mRNA 0.45 7 20205863 20209292

Neighbor

gene id symbol gene type direction distance location
eif4eb eif4e,LOC108263665,LOC103132121,LOC103460523,LOC106937591,LOC107556921,LOC107747571 coding downstream 45319 20157144 ~ 20160544 (-)
lingo2b lingo2,LOC107585221,LOC107666555,LOC107733787,LOC107556920,LOC107747569 coding downstream 55288 20127747 ~ 20150575 (-)
c9orf72 c3h9orf72,cunh9orf72,zgc:100846,LOC107747573,LOC107556919,LOC107733782,LOC107695028 coding downstream 85146 20111710 ~ 20120717 (-)
kiaa1109 kiaa1109,si:ch211-233a24.2,LOC107733727 coding downstream 95198 20066702 ~ 20110665 (-)
letm1 letm1,LOC107747576 coding downstream 173018 19996869 ~ 20032845 (-)
dapp1 dapp1,LOC107667071,LOC107747563,LOC107666557,LOC107585227 coding upstream 7924 20217216 ~ 20223681 (-)
gabrb1 gabrb1,LOC107666521,LOC107747557,LOC107733746,LOC107585222,LOC107667065 coding upstream 52743 20262035 ~ 20279042 (-)
gabrg1 gabrg1,si:dkey-155h10.3,LOC107747559,LOC107667066,LOC107666522,LOC107585224,LOC107569420,LOC107733747 coding upstream 100552 20309844 ~ 20317169 (-)
gabra2a gabra2,si:dkey-52k1.6,LOC108262858,LOC107747556,LOC107666515,LOC107569424 coding upstream 118613 20327905 ~ 20343502 (-)
trim8a LOC108263671 coding upstream 218579 20427871 ~ 20442232 (-)
G49661 NA non-coding downstream 21574 20181078 ~ 20184289 (-)
G49605 NA non-coding downstream 141352 20064256 ~ 20064511 (-)
G49606 NA non-coding downstream 180199 20020687 ~ 20025664 (-)
G49584 LOC108263592 non-coding downstream 235569 19895698 ~ 19970294 (-)
G49484 NA non-coding downstream 490443 19714165 ~ 19715420 (-)
G49700 NA non-coding upstream 6361 20215653 ~ 20216430 (-)
G49797 NA non-coding upstream 87826 20297118 ~ 20360451 (-)
LOC113537651 NA non-coding upstream 140118 20349410 ~ 20351476 (-)
G49806 NA non-coding upstream 254601 20463893 ~ 20464950 (-)
G49836 zmp:0000000662,LOC108263473,LOC108421699,LOC107747548,LOC107569423,LOC107666523 non-coding upstream 263185 20472477 ~ 20473295 (-)
metap1 metap1,LOC107556924 other downstream 270 20182053 ~ 20205593 (-)
slc4a11 slc4a11,LOC107695019 other downstream 437729 19716600 ~ 19768134 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other downstream 538202 19614717 ~ 19667661 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other downstream 886130 19316487 ~ 19319733 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other downstream 1592342 18330368 ~ 18613521 (-)
atp10d atp10d,LOC107556926 other upstream 15617 20224909 ~ 20256520 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other upstream 148642 20357934 ~ 20369445 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other upstream 1178451 21387743 ~ 21478705 (-)
plekhh2 plekhh2 other upstream 1402371 21611663 ~ 21645512 (-)
G50837 NA other upstream 1740563 21949855 ~ 21950189 (-)

Expression


Co-expression Network