mgme1 (mgme1)


Basic Information

Item Value
gene id mgme1
gene name mgme1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23837939 ~ 23840860 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936298.2
GCGGAACGCTTGTTTATACAGGTTTTAGAGAGCACAGATTACGGTCACACAAAGTCATTGTGGGAAATGGTGTTTTATTGGTTAATTTAAAACTACATTTCCCTACTCCCTTCGTTAATCGGACGGGACTCAAATTCAAAGTAGTACGGTACAAAATTTATGAGCTGTGAAAGTCTGTTAGATTCGTGAAATATTTAATGGGCTCGTTGGGTTGCACACAAAGCTGGAGTTTGCGAGAGGTGTATGTGGATGTAGCATTCAGCTCAAAACAGGAGCCACAATGCGGGTTTATAGGCTGTGGCTGCAGTCGTATTGTATGAGCGCTGTGCTCTCTGGACGCTTCTCTGGCTGCTCGTGCTCACGTATGGCTATGTTTTCGTCCTTCCCTTGTTTGCGGGCGCGCAAGAAGAGCAGCCAGTACGGCGATGTGGACTCTGAACACTATTCAGCACTAGTGAAAGCGGTCGTGTCTACGAGAATCAGCTCTCAGACTCCAGAAAGTATTGAAAACGAAGATCAGTGGCTTTACGGATCTATCGTAAAATCCAAGCCCCAGGTGTGCAGAGCGCTTAAAAACCCGTGGCCTCTGTTAAACGACGCAAAACGTGTCCTTGACGCAGAGAACGTGGAGGGAAGCATGACTCGGATAAGCTTGCAAAGAGGTTCAGATCACGCATCTATACCAAGTGTaacaaaaatacttcaaaagACAATGTCACCCCAGCAAGCCTTTTATTTGGAGAgatggaagaaaaagaagatcGCTGAGCTTGGCGTGGAAGGCTTCAAAGAATACAGCAACAATCTTTTCACACAGGGGAAACTGTTGCATGTAGCTGTTGAAGGAATTTTAACTGGAGAAAAAACCCTAATTGAAGATGGAGTGTGTCTTGAAAACGTGTCTGGGTATTTACAAAGTATCAGTCACGTGTTGGAGGACATTACAGGAGTGAAAGCCATTGAGAGTGTTGTGCAGCATCAGCCTCTACAGTACCTGGGCATTGTCGATTGTGTTGCCATGTACAAgaATTCACTGTGTGTCATAGAGTGGAAGACATCAGAGAAGCCAAAACCTTTCCTTTACAACACATATGACAACCCCTTGCAGGTGGCCGCCTACATTGGAGCCTTAAACAGTGACAAAAACTACAACTACCAGGTGGATAGTGGCTTGATTGTGGTTGCCTACAAAGACGGCTCACCAGCCCACTCTCACTTCCTGAAAGCAGACCAGGTTGTGCAGTATTGGGATAAATGGCTCTTCCGACTGGAGGAATATATGGAGAATGATGGGCCACCCAGTCCTTGCTGATGGCCCAAAAACTAAAAGTGTCTATAATCGTCCAACTGTGTGCTCAGTTGGTTTTGTTAGTCTTCTTCCTTTCTGTTCCAAGAAAGGGTCTAAAATCCATGGAAAGCAGTGCTTTATATGATTACACAAAATTCCAGATACGTGTAGTATCTACTGATACTTTACAAAAGAAGCTTGCACTTTCTGTATTATAGTACCATAAACTAGTCAGAAATATTTAAGTGCAGAGGACTATACCAATCTAATTTCCACTCACAGATGACTGAAAAATTCTTTCTGGCCTTTTGGTACTTCCTTCTTTACAAAGGAAATATTTAGATGAACAGCTTCTGCTTGAATGGATTTTACATTAGTGCAGTTGAATGTCTGGAATTGAATTCCCCCTGTTGTGAAAATTAACCTTTTTGAATGTTATGTATAGCTTTGTATTTTTGCAGTGCGTTGCTTCGTAGTTAACTTGTAAGTAAATCttgaggtttcttttttttcattactggAGGATACAGCACTTCCTTTCCAAATTACGTTAAAGTATTACTTGGATATGCAGAAGCATTTGAAATTGGTTTTATTGAACCATTTGTCATTTATGTATAGGCTGAGTATGGaatgctgtaatttttttgttgctttatttGCATtgcaaattttataaaaattaaatgtagttgacttttttctgaaaa
>XM_034303048.1
TTTATTGTTGGCATATCCGTTATGCGTTAAAACATTTCCTTGTAAcgttttatatatgtattttaaagaaatattttcttttttcctttcagagtTAAAGTACCTTGTGATTTCTACATTgccataaaatgtttaaaaaaaaagccagctgTTTCTGTCCAAATTACAATAATGCTCCCTGCGGAACGCTTGTTTATACAGGTTTTAGAGAGCACAGATTACGGTCACACAAAGTCATTGTGGGAAATGGTGTTTTATTGGTTAATTTAAAACTACATTTCCCTACTCCCTTCGTTAATCGGACGGGACTCAAATTCAAAGTAGTACGGTACAAAATTTATGAGCTGTGAAAGTCTGTTAGATTCGTGAAATATTTAATGGGCTCGTTGGGTTGCACACAAAGCTGGAGTTTGCGAGAGGTGTATGTGGATGTAGCATTCAGCTCAAAACAGGAGCCACAATGCGGGTTTATAGGCTGTGGCTGCAGTCGTATTGTATGAGCGCTGTGCTCTCTGGACGCTTCTCTGGCTGCTCGTGCTCACGTATGGCTATGTTTTCGTCCTTCCCTTGTTTGCGGGCGCGCAAGAAGAGCAGCCAGTACGGCGATGTGGACTCTGAACACTATTCAGCACTAGTGAAAGCGGTCGTGTCTACGAGAATCAGCTCTCAGACTCCAGAAAGTATTGAAAACGAAGATCAGTGGCTTTACGGATCTATCGTAAAATCCAAGCCCCAGGTGTGCAGAGCGCTTAAAAACCCGTGGCCTCTGTTAAACGACGCAAAACGTGTCCTTGACGCAGAGAACGTGGAGGGAAGCATGACTCGGATAAGCTTGCAAAGAGGTTCAGATCACGCATCTATACCAAGTGTaacaaaaatacttcaaaagACAATGTCACCCCAGCAAGCCTTTTATTTGGAGAgatggaagaaaaagaagatcGCTGAGCTTGGCGTGGAAGGCTTCAAAGAATACAGCAACAGTTTGCGAAACACTTGGATGGAAACCAGTGTGTGCCTCTTGTCGAACCTTCCAAATGGAAAgaATTCACTGTGTGTCATAGAGTGGAAGACATCAGAGAAGCCAAAACCTTTCCTTTACAACACATATGACAACCCCTTGCAGGTGGCCGCCTACATTGGAGCCTTAAACAGTGACAAAAACTACAACTACCAGGTGGATAGTGGCTTGATTGTGGTTGCCTACAAAGACGGCTCACCAGCCCACTCTCACTTCCTGAAAGCAGACCAGGTTGTGCAGTATTGGGATAAATGGCTCTTCCGACTGGAGGAATATATGGAGAATGATGGGCCACCCAGTCCTTGCTGATGGCCCAAAAACTAAAAGTGTCTATAATCGTCCAACTGTGTGCTCAGTTGGTTTTGTTAGTCTTCTTCCTTTCTGTTCCAAGAAAGGGTCTAAAATCCATGGAAAGCAGTGCTTTATATGATTACACAAAATTCCAGATACGTGTAGTATCTACTGATACTTTACAAAAGAAGCTTGCACTTTCTGTATTATAGTACCATAAACTAGTCAGAAATATTTAAGTGCAGAGGACTATACCAATCTAATTTCCACTCACAGATGACTGAAAAATTCTTTCTGGCCTTTTGGTACTTCCTTCTTTACAAAGGAAATATTTAGATGAACAGCTTCTGCTTGAATGGATTTTACATTAGTGCAGTTGAATGTCTGGAATTGAATTCCCCCTGTTGTGAAAATTAACCTTTTTGAATGTTATGTATAGCTTTGTATTTTTGCAGTGCGTTGCTTCGTAGTTAACTTGTAAGTAAATCttgaggtttcttttttttcattactggAGGATACAGCACTTCCTTTCCAAATTACGTTAAAGTATTACTTGGATATGCAGAAGCATTTGAAATTGGTTTTATTGAACCATTTGTCATTTATGTATAGGCTGAGTATGGaatgctgtaatttttttgttgctttatttGCATtgcaaattttataaaaattaaatgtagttgacttttttctgaaaa

Function

symbol description
mgme1 Predicted to enable single-stranded DNA exodeoxyribonuclease activity. Predicted to be involved in mitochondrial DNA replication. Predicted to act upstream of or within mitochondrial DNA repair. Predicted to be active in mitochondrion. Is expressed in several structures, including digestive system; lens; solid lens vesicle; vasculature; and ventral mesoderm. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 11. Orthologous to human MGME1 (mitochondrial genome maintenance exonuclease 1).

NR:

description
mitochondrial genome maintenance exonuclease 1-like

GO:

id name namespace
GO:0004527 exonuclease activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K19465 MGME1, DDK1; mitochondrial genome maintenance exonuclease 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936298.2 False 1998 mRNA 0.41 4 23837939 23840680
XM_034303048.1 True 2016 mRNA 0.40 4 23837939 23840860

Neighbor

gene id symbol gene type direction distance location
kifc1 kifc1,LOC108261151,LOC108261048,LOC108261613 coding downstream 87178 23727152 ~ 23750761 (-)
c1d c1d coding downstream 157958 23672419 ~ 23679981 (-)
phf10 phf10,LOC106589650 coding downstream 788815 23032198 ~ 23049124 (-)
fam120b fam120b coding downstream 860296 22964720 ~ 22977643 (-)
ppm1g ppm1g,LOC107660231,LOC107717838,LOC107702697,LOC107754752 coding downstream 903078 22927645 ~ 22934861 (-)
mrpl14 mrpl14,LOC102799944 coding upstream 21859 23862719 ~ 23867530 (-)
arid4b arid4b,LOC107690809,LOC102789854 coding upstream 349558 24190418 ~ 24316428 (-)
LOC113542016 sipa1l2 coding upstream 972114 24812974 ~ 25090822 (-)
dnajc12 dnajc12 coding upstream 1467446 25308306 ~ 25330202 (-)
msh6 msh6 coding upstream 1653816 25494676 ~ 25504756 (-)
G51781 NA non-coding downstream 112851 23724878 ~ 23725088 (-)
LOC113544646 NA non-coding downstream 121999 23687614 ~ 23715940 (-)
LOC117596832 NA non-coding downstream 150440 23686729 ~ 23687499 (-)
LOC113537953 NA non-coding downstream 165789 23668808 ~ 23672150 (-)
G51600 NA non-coding downstream 329200 23508529 ~ 23508739 (-)
G51876 NA non-coding upstream 41167 23882027 ~ 23882335 (-)
G51887 NA non-coding upstream 103991 23944851 ~ 23946345 (-)
G51903 NA non-coding upstream 164528 24005388 ~ 24005685 (-)
G51943 NA non-coding upstream 295646 24136506 ~ 24136795 (-)
LOC117596863 NA non-coding upstream 419492 24260352 ~ 24269139 (-)
G51576 NA other downstream 383722 23447908 ~ 23454217 (-)
znf318 znf318 other downstream 1049135 22774355 ~ 22788804 (-)
LOC113541574 LOC108263228 other downstream 1266071 22565771 ~ 22571868 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other downstream 1714290 22035285 ~ 22123649 (-)
G50837 NA other downstream 1887750 21949855 ~ 21950189 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other upstream 176036 24016896 ~ 24040100 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other upstream 267491 24108351 ~ 24132483 (-)
lyst lyst,LOC107569426 other upstream 611126 24451986 ~ 24651847 (-)
herc4 herc4,LOC107689351 other upstream 821125 24661985 ~ 24735888 (-)
LOC113542183 NA other upstream 2069158 25910018 ~ 25910119 (-)

Expression


Co-expression Network