mrpl14 (mrpl14,LOC102799944)


Basic Information

Item Value
gene id mrpl14
gene name mrpl14,LOC102799944
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23862719 ~ 23867530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936389.2
ATTTTGAAATATGGAAATTATGGGTGAATGCAGCCGGAAGTAATTCTACTGGAATAGCTGGTTCACGCTGATGAAGATCACTATGGCCTTCTCATCAATGGCACTTCCAAAGATATTATCGACAACACACTACAGGTTTTTCAGTGTTTCAACAGTTGTGGCAGCTCTTCAGAAGCTGACAAGAGTACGGGTGGTCGACAACAGCAGTCTTGGAAACACCCCCTATCACCGTTCTCCTAGAGTCATTCATGTATACACCAAGAATGGAGTGGGCAAAGTGGGTGACACTGTCCTATTGGCCATTaaaggacagaaaaagaaagcactGATTGTGGGTCACAAGATGCCTGGACCAAGAATGTCACCTAGGTTTGATTCAAACAATGTTGTTTTGATTGAAGAAAATGGGAACCCAATAGGAACAAGGATTAAAGCACCCATACCTACACATTTACGCAAACTAGAAGGTGATTACTCCAAATTATTAGCTATTGCACAACGCTTTGTGTAGCTTGTGTTACTGAGCTGTAAATTACCATTTGGCTGAGAAGACTTCTGCTACTATTGCTGTTTGGTAGTGTTTctaattaaacaaaagaaagaaaaatatattaatgtctCCAAAACATGGCAAACCACTTAACAGttaataaaacttaataaagtgatataaaaaagtctaaa
>XM_026936398.2
CACGCTGATGAAGGTGAGGTGATTAACGCATAAGAAGGTGTTTAGCCTACTTATATTTGCTGATCACTATGGCCTTCTCATCAATGGCACTTCCAAAGATATTATCGACAACACACTACAGGTTTTTCAGTGTTTCAACAGTTGTGGCAGCTCTTCAGAAGCTGACAAGAGTACGGGTGGTCGACAACAGCAGTCTTGGAAACACCCCCTATCACCGTTCTCCTAGAGTCATTCATGTATACACCAAGAATGGAGTGGGCAAAGTGGGTGACACTGTCCTATTGGCCATTaaaggacagaaaaagaaagcactGATTGTGGGTCACAAGATGCCTGGACCAAGAATGTCACCTAGGTTTGATTCAAACAATGTTGTTTTGATTGAAGAAAATGGGAACCCAATAGGAACAAGGATTAAAGCACCCATACCTACACATTTACGCAAACTAGAAGGTGATTACTCCAAATTATTAGCTATTGCACAACGCTTTGTGTAGCTTGTGTTACTGAGCTGTAAATTACCATTTGGCTGAGAAGACTTCTGCTACTATTGCTGTTTGGTAGTGTTTctaattaaacaaaagaaagaaaaatatattaatgtctCCAAAACATGGCAAACCACTTAACAGttaataaaacttaataaagtgatataaaaaagtctaaa
>XM_034302988.1
AATAGCTGGTTCACGCTGATGAAGGTGAGGTGATTAACGCATAAGAAGATCACTATGGCCTTCTCATCAATGGCACTTCCAAAGATATTATCGACAACACACTACAGGTTTTTCAGTGTTTCAACAGTTGTGGCAGCTCTTCAGAAGCTGACAAGAGTACGGGTGGTCGACAACAGCAGTCTTGGAAACACCCCCTATCACCGTTCTCCTAGAGTCATTCATGTATACACCAAGAATGGAGTGGGCAAAGTGGGTGACACTGTCCTATTGGCCATTaaaggacagaaaaagaaagcactGATTGTGGGTCACAAGATGCCTGGACCAAGAATGTCACCTAGGTTTGATTCAAACAATGTTGTTTTGATTGAAGAAAATGGGAACCCAATAGGAACAAGGATTAAAGCACCCATACCTACACATTTACGCAAACTAGAAGGTGATTACTCCAAATTATTAGCTATTGCACAACGCTTTGTGTAGCTTGTGTTACTGAGCTGTAAATTACCATTTGGCTGAGAAGACTTCTGCTACTATTGCTGTTTGGTAGTGTTTctaattaaacaaaagaaagaaaaatatattaatgtctCCAAAACATGGCAAACCACTTAACAGttaataaaacttaataaagtgatataaaaaagtctaaa

Function

symbol description
mrpl14 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Predicted to be active in mitochondrion. Orthologous to human MRPL14 (mitochondrial ribosomal protein L14).

NR:

description
39S ribosomal protein L14, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02874 RP-L14, MRPL14, rplN; large subunit ribosomal protein L14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936389.2 True 684 mRNA 0.39 3 23862719 23867530
XM_026936398.2 False 670 mRNA 0.39 3 23862719 23867467
XM_034302988.1 False 656 mRNA 0.39 3 23862719 23867478

Neighbor

gene id symbol gene type direction distance location
mgme1 mgme1 coding downstream 21859 23837939 ~ 23840860 (-)
kifc1 kifc1,LOC108261151,LOC108261048,LOC108261613 coding downstream 111958 23727152 ~ 23750761 (-)
c1d c1d coding downstream 182738 23672419 ~ 23679981 (-)
phf10 phf10,LOC106589650 coding downstream 813595 23032198 ~ 23049124 (-)
fam120b fam120b coding downstream 885076 22964720 ~ 22977643 (-)
arid4b arid4b,LOC107690809,LOC102789854 coding upstream 322888 24190418 ~ 24316428 (-)
LOC113542016 sipa1l2 coding upstream 945444 24812974 ~ 25090822 (-)
dnajc12 dnajc12 coding upstream 1440776 25308306 ~ 25330202 (-)
msh6 msh6 coding upstream 1627146 25494676 ~ 25504756 (-)
LOC113541965 zc3h6,LOC102799538,LOC100704674 coding upstream 1818154 25685684 ~ 25697851 (-)
G51781 NA non-coding downstream 137631 23724878 ~ 23725088 (-)
LOC113544646 NA non-coding downstream 146779 23687614 ~ 23715940 (-)
LOC117596832 NA non-coding downstream 175220 23686729 ~ 23687499 (-)
LOC113537953 NA non-coding downstream 190569 23668808 ~ 23672150 (-)
G51600 NA non-coding downstream 353980 23508529 ~ 23508739 (-)
G51876 NA non-coding upstream 14497 23882027 ~ 23882335 (-)
G51887 NA non-coding upstream 77321 23944851 ~ 23946345 (-)
G51903 NA non-coding upstream 137858 24005388 ~ 24005685 (-)
G51943 NA non-coding upstream 268976 24136506 ~ 24136795 (-)
LOC117596863 NA non-coding upstream 392822 24260352 ~ 24269139 (-)
G51576 NA other downstream 408502 23447908 ~ 23454217 (-)
znf318 znf318 other downstream 1073915 22774355 ~ 22788804 (-)
LOC113541574 LOC108263228 other downstream 1290851 22565771 ~ 22571868 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other downstream 1739070 22035285 ~ 22123649 (-)
G50837 NA other downstream 1912530 21949855 ~ 21950189 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other upstream 149366 24016896 ~ 24040100 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other upstream 240821 24108351 ~ 24132483 (-)
lyst lyst,LOC107569426 other upstream 584456 24451986 ~ 24651847 (-)
herc4 herc4,LOC107689351 other upstream 794455 24661985 ~ 24735888 (-)
LOC113542183 NA other upstream 2042488 25910018 ~ 25910119 (-)

Expression


Co-expression Network