zswim8 (zswim8,LOC107713895,LOC107743573)


Basic Information

Item Value
gene id zswim8
gene name zswim8,LOC107713895,LOC107743573
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10449319 ~ 10488807 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936466.2
gagagagagagagagagagagagagagagagagagagagagagagagagacggatgaCGGGAGAAGGAAATCAGGGGAACTCGGCTCAGATAGGTGGTATTTCGGATTTGGATCAATCAGGAGTCGTGGTGGGAGCAGAATTTGGGAATTTGGAGCCGAGGACTGAGAAACCGGTGGGAGATCTCGAGAGCAAAACAGTACCATGCTATTGTAGGAAGAATTATGAGAGGTCTGTGGgagtgcaaacaaaaatacagcgcTAGCTAGCTGTGGGTGCCGGTGAACAAATGTCAAGCCTGTGTTGCACGGTGCATTGTGTCGGTCACATCACCGTACAGCTTCGCTAACTCGCGTATTTGAGAGACAATCCCAAAAGAACTGAATAAACAACCAGCAGCGCGACTACATTCTGGTGTTTAGACTAGGATTAGGGATCAAGTGTTGTCCTGGCATGGCTTGTCAATATTAAAATCGCGCTGAATTGAACAGTGTTCGTTTATTTCGAAGGATAAAAATGAACAGCATTAGCCAGTGATGTTAGTTCGCGTTGTCTCGGGATGTCTTTGTAGCCAAATCGGATTAGCCTCAAAACTATTTGCTAGCAGCTAACGAGTCGCGAGCAAAAAAACTAGCTAAGCTAGTCGCTAGGAGTTAGCTAGGTCGCTAGCTTAGCTGTTCGTTCGATTTTTGCCTGAACTGTAAAACCACATACAAGTAATTTTAAGTAAAGAAAATTGACTAGTTGTTGTAAGTTGACAGTGTTTACATCGATGATACGCAGGCGTCTTGTTAAATAagagtgtattttgtttttaccGGTCGCTTGATGGTTAGCTTGtcttttagctagctaggtttgCTAGCCGGCATCAGAGTAGCTTTTGTGGAGCACAAGCAGAGTGGCTCAGCTGCTTTTTGGAGTAAGAAGAGAAAGGGGTCGTGGTGAAGGAAGGAAAACTTGTAAGTTCGACTAACTTTGCAAACAGTTTTATCGTGTCTGAGTTATTTCTCTAAATATTTATCACAACACTAGCTACTCAATGTCATAATGGCAGTATAAAGCAATATATGGAGTTTTCAGTGGACAGTTTGTGCcttgaaacaacaacaacaaagatcCAGCAAAAGGAAACTTGGAGTGTTTGAGCATTTGGGATCAACTCACACACGAGTCGAGTTTAAATATCTAGGTTATCAGAAATGTCATTGCTCTTTCAGAAAGGGTAGAAAGTGTTACTTTGTGCATCTTTGAGTTGTAGTGCTTTAGTTCTGCGCCTTACAcatcaatgtttattttttcgtGTCCTCGTGCTTTTGGGATATATTCAAGAAGCAGTCCTGATTTCGACAGCATAAAAAGTGGGAACACATTCCGAAAAACATGGACTAACTTTCCATGACGATGCCTAAAGATCAGATCTGACTGAAAGGAGTGAATGGAGGTATTTTTGATGCACCGTGTGTGTTGTCACCGTAAACAGGCCTCGAAAAAGAAGTGTGCTTCTAGCTGAGAGACTTTGGGCGAGTTGCTCCTTGCTGTGTTTTGATTCACTTCAGTCCCCCTCCCCCAAGCTACAAGTTGCCCCAGTAGAAGTGCTCTTCTTCGCCCATGCACTCAGCCTGCACTCTGTGTGTCAGCTGTGCAAGCTGAACTGTCCTGCCTGAGCTGCAAGTGACTCCAAGGCTTCCGCTTTTTTCACCCTCACCACCAGCCAATGTGATGGAACTGATGTTCGCAGAGTGGGAAGACGGAGAGAGGTTCTCCTTCGAGGACTCGGATCGATTCGAAGAGGATTCCCTTTGCTCCTTCATCTCAGAGGCAGAAAGCCTGTGTCAGAATTGGAGAGGATGGAGAAAACAGTCCGCTGGTCCCAACTCACCTACTGTTAAAATTAAAGATGGACAGGTCATCCCTCTGGTAGAGTTGTCAGCCAAGCAAGTGGCATTCCATATCCCGTTTGAGGTGGTGGAGAAAGTTTATCCTCCTGTTCCCGAGCAGCTTCAGCTTCGCATCGCCTACTGGAGCTTTCCTGAAAATGAGGAGGATATCAGGTTGTATTCCTGCTTGGCCAATGGGAGCCCCGATGAGTTCCAGCGTGGAGAGCAGCTCTATCGGGTGAGAGCTGTGAAAGATCCCCTGCAGATAGGTTTCCATCTCAGTGCCACTGTCCTCTCACCCCAGGCTGGCCAGTCAAAGGGTGCCTACAATGTGGCTGTCATGTTTGACCGTTGCCGCATCACTTCCTGCAGCTGCACCTGTGGAGCTGGAGCAAAATGGTGTGCTCATGTGGTGGCGCTCTGCCTCTTCAGGATTCATAATGCGTCTGCTGTGTGCTTGCGAGCCCCCGTATCCGAGTCCCTGTCCAGACTGCAGAGGGACCAACTGCAGAAGTTTGCACAGTATCTCATTAGTGAGCTTCCGCAGCAGATCTTACCCACAGCCCAGCGTCTTTTAGATGAACTTCTGTCCTCACAGTCCACTGCAATTAACACAGTATGTGGAGCTCCAGACCCTACTGCTGGGCCTTCAGCTTCAGACCAAAGCACCTGGTACCTGGATGAATCCACCCTCAGTGACAACATTAAGAAGACGCTGCACAAGTTCTGTGGCCCCTCCCCAGTAGTGTTCAGTGATGTGAACTCGATGTATCTCTCATCCACGGAGCCCCCAGCTGCAGCTGAGTGGGCCTGCTTACTGAGGCCACTGAGGGGCAGAGAGCCAGAGGGCATCTGGAACCTTCTGTCCATTGTCAGGGAGATGTTCAAGAGGCGAGACAGCAATGCTGCACCACTTTTGGAAATCCTCACTGAACAGTGCCTCACCTATGAACAAATCATTGGTTGGTGGTACAGTGTGCGGACATCTGCATCTCACAGCAGTGCCAGTGGACATACAGGCCGCAGTAATGGGCAGACGGAGGTAGCTGCTCACGCCTGTGCCAGCATGTGTGATGAAATGGTGGTGCTCTGGAGGCTGGCTGTGCTTGACCCCACCATGAGCCCCCAGAGGCGTTTGGAGCTTGCTGCCCAGCTCAAGCAGTGGCACCTTAAAGTGATTGAGATTGTGAAGCGGGGACAGCACCGCAAGTCTCTGGACAAACTCTTCCAGGGTTTCAAACCGGCTGTTGAGTCTTGTTACTTCAACTGGGAAGTGGCATACCCTCTGCCTGGCATCACCTACTGCAGTGCAGACAAAAAGAACGCTTCCTTTGGCTGGGCCCGGGCAGCGCAGCCACAGAGAGGGGCCAAAGCAGGGATGAGCGGGGAACCTCTGGAGCctgggggaggaggaggaggaggtggacgAGCTGGGGGATCTGAATCTGGAGCTCCTGAACACAAATCACGTGGCAACTCCCACCCACCCCAGCAAGAGGTGGCCGTGCGTCCCAAAGAGACCATTGTGAGCAAAAGAAAAGCCATGTCTGGAGTGAACAGTGGAGGTATGTTAGTACGTTTAGGTGGGGGTATGTCTCTATCTGTAGATGAAAGCACAAAGGGTGGGTATAAAGCTTGCAGCTCTTCGCTATCTACTAGCGGCAAAGGCAAGCTAACGCAGAGTGGTAAGAGTTCGTGTGGAAGTTCGAGCGCTGCAGGTGGGAAGCATCCAAGTGCTAAACGCCGCACTAGCAGTGAGGACAGCTCTTTGGAGCCTGATATGGCTGAGCTGAGCCTGGATGACGGCTCTAGCCTGGCATTGGGAGCAGAGGCGAGCAACACTTTTGACTTCTTGCCTCCACCCCCTGAGATGCTGCCCTCACCCAGCTCTCTCCTCAGAGAACCACGCAAGTACAGCAGCAGTAGTGGTGGTGGCAACATCACCAAGGAGCGAGCGTTTGAGGGTAAACGTGGCATCCATGCAGCAATACCACTGGCAGCTGAAGCCCCTCACTGCTTCCCCAAAGAAAGCCCAATGGCTGTCTTGGCAGTAGCAGTGGAGAAAGAGGTGGATGTGGAGGCAGAACTTGAGGAAAATGGAGGAGATGAAGATCCAGTAGAGGATGCTCTGCCATCTATATCAGCTATGGTCACAGCAAAACCTTCTCGAAGCcgaagagagggagaaggaagCAACACAGCAGGTACACCTGGACCCCAGATCCCAGAGGCAGCAGCTGGTGGAGACCCAGTTGGTGAGGATGATTACCAGGCGTACTATCTCAGTGCAGCCTCTGAGGAGGGAGCCGAGAGAGGAGTGCCAGACAGCAACCTTGAGGAAGAACCGGACATCTTCGCTGGAATCAAACCTCTGGAGCAGGAAGGTCGGATGGAGGTGCTGTTTGCCTGTGCAGAGGCTCTATATGCTCATGGTTACAGTAATGAAGCATGTCGTCTGGCTGTGGAGCTAGCGAGAGACCTCCTGGCCAACCCCCCTGACCTCAAAGTGGAACAGCCACAGACAAAGGGTAAGAAGAGTAAGGTGTCAACCAGCAGACAGACGCAAGTGGCTACCAAAACTCTTTCCAAGGCAGCGTTCCTGCTCACAGTGCTGAGTGAGAGACTGGAGTTCCATAACCTAGCCTTTAGCACTGGCATGTTCTCATTGGAGCTCCAGAGACCTCCAGCTTCCACCAAGGCCCTGGAGGTGAAGCTGGCATATCAGGAGTCAGAGGTGGTTGCTTTGCTGAAGAAGATTCCTCTGGGTCTTGTGGAGATGACTGCTATAAGGGATAGAGCTGAGCAGTTACGCGACGGAAACTTCTGTGATTATCGTCCAGTTCTGCCCCTAATGCTGGCCAGTTTCATTTTTGACGTTTTGTGTACTCCAGTGGTCTCTCCCACGGGTTCACGTCCACCCAGTCGTAATCGTAACAATGAGATGCCAGGTGATGAAGAGCTGGGCTTTGAGGCTGCTGTTGCTGCTCTAGGTATGAAGACTACGGTTAGTGAAGCAGAGCACCCTTTGCTGTGTGAGGGCACTAGGAGGGAGAAAGGAGACCTCGCTTTGGCTCTTATGATCACCTACAAGGATGACCAGAGCAAGCTGAAAAAGATTTTAGACAAGCTCCTTGACCGTGAGAGTCAAACCCATAAGCCCCAGACTCTCAGCTCATTCTACTCCAGTAAACCGGCTGCAGGTAGCCAGAAGAGCCCATCCAAACATGCGACTCATGGAAGCAGTGCCACAGGAGGTGTGTCCAAACACGCAACGCCGGCTACAACAGGAAGTTCCACCTCTGTGCAAAGTGTTTCAGGTGGTGGGGCGGCTGGGCAGCAGGGTGGGCTGACGGGCACTGGGGTTCAGGGCACGGCATCAGGAGATGCAGCCAGTGAGAGCCGAGAGCAAGATGGAGCTCAGTCATCCTCGTGTGAGCAGCAGAATGAAGTGGCTTCTTTCAAGCCTGAGGGCACGGTGCCCAGCCGCCTGGCACTCGGTGGCCGGGGAGCCTATGGATCACGCTGCTGGGGCTCACCTGTAcggcagaaaaaaaagcacacagGCATGGCAAGCATTGACAGTAGCGCTCCTGAGACCACCTCTGACAGCTCCCCCACACTCAGTCGTCGTCCGCTGAGAGGTGGATGGCCGGCGTCTTCTTGGGGGAGGGGTCAAGACAGTGACAGCATCAGCAGCTCATCTTCTGATTCGTTGGGCTCCTCGTCATCCAGTGGGTCGCGCAGAGCTGGGGGAGGAGCCAGAGCCAAGAGCACTGACACCAGCAGGTATAAAGGGCGTCGCCCTGAATGCCACGCTCCACATGTGCCCAACCAGCCATCGGAGGCGGCAGCTCACTTCTACTTTGAACTGGCCAAGACTGTGTTGGTAAAGGCTGGAGGAAACAGCTCGACCTCCATCTTTACTCAGCCTTCTGCCAGTGGGGGCCACCAGGGGCCTCACCGCAACCTGCACCTGTGTGCCTTTGAGATCGGCCTTTATGCCTTGGGCCTGCACAACTTTGTGTCTCCCAACTGGCTGTCAAGGACGTACTCATCTCATGTGTCCTGGATCACAGGCCAAGCCATGGAGATTGGCAGTGCTGCTCTTAACATCCTTGTGGAGTGTTGGGATGGTCATCTCACCCCTCCTGAAGTGGCGTCACTGGCAGACCGGGCATCACGGGCCCGAGACCCCAACATGGTACGAGCTGCAGCTGAACTCGCACTGAGCTGTCTACCTCACGCTCATGCCCTAAACCCCAACGAGATCCAGAGGGCACTGGTGCAGTGCAAAGAGCAGGATAACTTGATGCTGGAGAAGGCGTGCATGGCAGTAGAGGAGGCGGCAAAGGGAGGAGGTGTGTACCCTGAGGTATTGTTTGAGGTGGCCCATCAGTGGTACTGGCTGTATGAGCAGACGGTGGGTGGAGTCTCTGCATCACAGAGGGAGGGGCCAAGCCGATGTGGGGCAAATGGTGGAGCGGCTCGGAGACCTCCGGAAGGGAACTGCGGTGTGTTGGAAAGCTCCGTGGCCATGGACTCTGCCGGTGTAGCAGCTGTTACTGCGTCGGTCAGTGCAGCCGCTGTTGTGCCCGTTATATCTGTGGGCTCCACTCTCTACCAGTCGCACACACTGCCGGGCACGGCCATGGCACACACGCCAGGTCTGCACCCCTATACCACTATCCAAGCCCATTTGCCTACTGTCTGCACCCAGCAGTATCTGGGCCATCAACTCCAGCATGTCCCCCGACCTGCCGTCTTCCCCGTGTCCGGTACTGCGTATCCACAGGGAATGCATCCTGCCTTTATTGGTGCGCAGTACCCTTTCTCTGTAACCTCCGGGCCTCATCCTCCCATGGCAGCAACTGCAGTCACCTTCCCCGGAGTCCCCGTACCGTCCATGACTCAGATTGCTGTCCACCCCTACCACACCGCCGAGGCGGGTTTACCCCTCAGTACTACTGTGGCAGTCGGTGGGGTTCACTCAGGCTCCACCATCCAGGCCATTCAGGGGACATCTCTTCCTGGCCTTTCTTCTCAGCCACCTTCATTGGTTAGTGCGCCGTTCCCTGTGGAAGACGAGCAGCACAGTCAGCCTGTCAGCCAGCAGGGGCTGCACTACCTGCATTCGGCCTACAGAGTTGGTATGCTGGCCCTGGAGATGCTGGGTAGGAGAGCTCACAACGACCATCCTAACAACTTCTCCCGCAGCCCCCCATACACAGAGGATGTGAAATGGCTGCTAGGCCTCGCTGCACGACTCGGTGTGAATTACGTGTATCAGTTCTGTGTGGGGGCTGCCAAAGGTGTGCTGAGTCCATTCGTGCTGCAGGAGATCATTATGGAGGCTCTGCAGAGGCTGAATCCTGCACACATTCATGCTCACCTCCGCACTCCTGCCTTCCACCAGCTCGTGCAGCGCTGCCAGCAAGCCTACCTACAGTACATCAACTATCGGCTGATCCACCTGACCCCGGCAGACTACGACGACTTTGTAAACATAATTCGAAGTGCCCGCGGGGCGTTCTGTCTCACCCCGATGGGCATGATGCAGTTCAACGATGTCCTGCAGACCCTGAAGAGGGGGAAGCAGACCAAGGAGCTGTGGCAGCGGATCTCGCTGGAGATGGCCACGTTTTCACCCTGAGAGCTCCACACACCAGCAGgcactgactgactgaacttcAGCTCGCCCCAGAGCTCAGCCCAAGCCTAGTGTGAGCCACAGTGCCCCCTGCAGAATCCAGACCCATCACTGGCAGCACAATCAGTCCTCCTCTTGGTCCTGTATTACTCCAGGATGTGCAATCTCATGGAGTTTCGGAGACATGGGAATAACTCGTTAAAATGATCCTTCCCTTATTATCGAACCCATTGTCGtgtctgatttttttgtgtgacgTCGAGTAACTTATGACTAGTGTTTTATCTTAAAAtctgtctcttttcctcttttcactATGTTGATGCTCTGCTTCACTGAGTTTTAGTTGTATAGTTATTGAAatacaatgtgttttttttttttttttcttcattagttTTGTTGATGTTTGTTGATTCAAATTTGAATGAAAACTAAATGTCAGACTCATACTGCAACATTCCTCTACTTTTGGAGGAGTGAGCCTCCACCGGGCATAAAGGATTACAGCGTTGGATACTCAGTGTATGAACGAGGGAAGAACATCCTTTATTAAAAGAAGTAAACAGACATTTAATAGGAAACAATAATCAAGTACGGGTGAGGATTCTTCTacgttttgttttattctttggtttttttttttttgatattttgtatAGTGTGGTGTGTGCAGCGAACAGTTTGAGGAATGAAAGTGACTGCTAGCTGAGTTCCCTTTTCCAGCTGGCTGTTGGTGGCGAGGGCTTGAGGTTTTGGAGCACAGACGTTTGGCTggaccagattttttttaacctacatGACTTTTCAGAATTTATCTATTACAGTTCCACTGCCAACAGGCTCTCGTCTTTCCACTCTTTTCCTCAGCATTAAACTTCACGGATATtaatatgtgcatgtgtatttatCATCAAATGTCGATGTGCATACACAGGCAAAAGCAGTATTCTCCTTTTATCTCAGATCTCATTAATGTCTGTCTCcctgagacagacacacacacacacacacacgtgtttttGATGTTAACCTAGAGAGGTGGTCCATTGCCAGGTTCCTGTGTTCCAGCCTCAAGTCCGGCACCCACTTTGGAGCTCACTAGTAGGGAATGATTGTAGAAATTgtactgtgatatttttgtattcttcaaaGTGTAGCTTGATTGGGAagaagatatataaatatataaatatatatgaatatataaactGTGCTGATTGCAAATGGTTGTAATCTagactaaaggaaaaaaaatataaaaatggaaCAGACAAAAagcaatattgaaaatgtagAGTTTACTTAATAAAGATAACTCAAAACACTAA

Function

symbol description
zswim8 Predicted to enable zinc ion binding activity. Predicted to be part of Cul2-RING ubiquitin ligase complex. Orthologous to human ZSWIM8 (zinc finger SWIM-type containing 8).

NR:

description
zinc finger SWIM domain-containing protein 8-like isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K25207 ZSWIM8; zinc finger SWIM domain-containing protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936466.2 True 8856 mRNA 0.51 26 10449319 10488807

Neighbor

gene id symbol gene type direction distance location
ndst2a ndst2,LOC107666426,LOC107726987,LOC107743572 coding downstream 1592 10331733 ~ 10447727 (-)
si:dkey-174i8.1 LOC108262936,LOC108438205,LOC107568550,LOC107743623,LOC107568549,LOC107696867 coding downstream 119098 10323316 ~ 10330221 (-)
camk2g2 camk2g,camk2g2,LOC107726985,LOC107666428,LOC108410509,LOC107684098,LOC100707324,LOC106606853,LOC106576966 coding downstream 131124 10255625 ~ 10318195 (-)
synpo2la synpo2l coding downstream 196232 10244156 ~ 10253087 (-)
myoz1a myoz1,LOC107601804,LOC107726982,LOC107743622,LOC107696874,LOC107568548,LOC107666563 coding downstream 208536 10234757 ~ 10240783 (-)
si:ch211-51a6.2 si:ch211-51a6.2,LOC108263106,LOC108438184,LOC106606783,LOC107555315,LOC107565929 coding upstream 4030 10492837 ~ 10511847 (-)
chchd1 chchd1 coding upstream 25144 10513951 ~ 10516957 (-)
mtg1 mtg1,LOC107666383,LOC107565923,LOC107696879 coding upstream 68794 10557601 ~ 10562588 (-)
LOC113541130 NA coding upstream 78550 10567357 ~ 10568828 (-)
pbld LOC108261389,LOC108263388 coding upstream 99069 10587876 ~ 10593240 (-)
G43987 NA non-coding downstream 132871 10315725 ~ 10316448 (-)
G43982 NA non-coding downstream 144237 10291067 ~ 10305082 (-)
G43981 NA non-coding downstream 183731 10265356 ~ 10265588 (-)
G43978 NA non-coding downstream 195381 10253724 ~ 10253938 (-)
G43910 NA non-coding downstream 206437 10241941 ~ 10242882 (-)
G44103 NA non-coding upstream 164907 10653714 ~ 10655844 (-)
G44105 NA non-coding upstream 184539 10673346 ~ 10723668 (-)
G44173 NA non-coding upstream 327865 10816672 ~ 10817292 (-)
G44262 NA non-coding upstream 433502 10922309 ~ 10925258 (-)
G44271 NA non-coding upstream 464698 10953505 ~ 10956492 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 287796 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 440758 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1220435 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1595525 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1665521 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 1219807 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1522124 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1656033 12144840 ~ 12152522 (-)
nin nin other upstream 1946302 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 2035829 12524636 ~ 12534215 (-)

Expression


Co-expression Network