ncoa4 (ncoa4)


Basic Information

Item Value
gene id ncoa4
gene name ncoa4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22589052 ~ 22598199 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936487.2
TCGAGTTATATGTAATATGGATGCAACAGTTCCCCCCATTAACTACGAAGGGCATATGTTTATGATCGTCTAACGGAACCAttttggcagtgtgtgtgtgtggaatttgCCGGCTCGTGTTTCTGTCCTTTTCCGCACGACAGCTTTTCCACGAATAATTCCATGCCATCAGTGTCATCCAAACACAAACTGATGTCCAGGAGAGAACACGGcaTGTCGCCACTAGGAGAGCGAGAGGACGCGGCCCTCCGGCAGTGTGTTCAGGCTCGGGCGCAGCTGGAGGGGGCCATAGCTGGAGTGATTAAAGCTGAGGCCCAGCTCAGGGGGAACTCTCGAGAGGTGAAATCTCAGCTGCACAGCTGTATCAGCAGGCATTTGGAGACACTGCGCTCACGAGAGGTTTGGCTGCTCGAGCAGATTGACCTGTTGGAGCACCTGAAGGCAGAAGCTCTGCAGCAGCAGTTACAGCAGCTCCACTGGCTCCGGGGCCAGTTTGACATCCTGATCCATCAACTGCAAAATTCCAACAGCAACAGCCTTGCCAGCCAGCTCACTAGCTGCTTGGAAAAGTTTTCTGGTCTGAATCTGAGTCCTGAGGAAACGCCAGAGATGAGTTTTGAAGCGGACGCCCGCTCCTTGCGCCAAGCCATTACCTCTTTTGGGACCATTTCCACTCAGATGTTGAAGACCTCTGTCTCCAGCCTAACCAGTCAAAAATCAGGCTCTGCTGAGGAAACTTGGCTTGTACAAAACTGCCCCGTCGCTACAAAGAGACAGAAGCTGGATCAAGAATGGGGAGGCCCACTTGCCGAGTGGTTACTCACCAAAGGTCCTGTGACTAGCGCTCCAATTGTATACCAGTCCAGTAATGACCCTCAGGATTGGCTGTTAACCCCTAAAGAGAAACTTCAGGTACATTGCCCACTTGTCCCCTTTGACTTCCAGAAGGCTTGGGGTCAGCTCAAAGATCTAGAGGTGTGGCTCCTGAAGGAGAAGTCTCCTGCACGTGAGCGAACCAGCAGCAATGCCAGCACTAGCAGCTCCGCTTTCTCCATCGAGAAGATTGAAGAGAATGACTTCAAAGAGGAAGGGGAAGTTGAGGGAGTCCAAATGGAGAATGATGAGGAGACTGATAACACTGAGGCTTTTGACGACTGGCTCATCACCCCCAAAAGCAAGTCGATGGAGACCAGCCCTGCTTCAGATGCAGATCAGTGGAAGCAGGTGTTCAAACCCTTTCATGAGACCTTTTCCCCTGACGAATGGCTCCCAAAGTCAGACTGTGGCTCGTGCTGCACCTCACGTGTCAAGGCAGTGGAGATTGAGAACCTGGGGAAGCTCAAGTGCCTGAAAACTCCCCTGTCTTCGGCTGCCGCTGCTCCCACTACTCCCACTCGCTCTTCTGTGAGTCCTGATCCAGTGGAGGTCTGGCTCCAGCAGGTCGTCCCTATAGAAAATAACTGCAAAGCCAATGAGACATGTTCAAGCTTTGCGCAGTGTGTGTGCGACACCAACTGTGGGAAGGAGGCTCTGAGTGCCTGGCTACTTAAGAAAGAGGGCAGAGACAAGAATGGCATTCCCATGGACAAGAATGCCACCAACAAACCAGCCATGttacagcagcaggagcagaagGTGCAGGCCATCCTGGACGCCTGGCTCCATCCCAGCAAAAGAGTAGAAGCTCCATTTCTGTCCTCTCTGTCAGGCTGGGTTTCTCCATGCAAGCTTGGGGGGAAGGAGAAAGCCACTTTTGAGGAGAGGAGCTCACACGTTAATTTGCTCAGAGTTTCTGAGGGTCCCTTCCACAAACCCCTGAAACCTGAGAATTGGGTGCTGGctgaaaagaaacacacagagacctcCAGCAAGCAGAACACACCAGAGCCAGACACTGAAGATGACAAATGGCTCCTACGCAAGAGGGCCAACGTACAGGACAGACTTGGTCTTCCCAAAGtatgtgatttattttcctgtctTAAGCTTGACGGGGACAAGGAGAAGTGGCTACATCACATTCCTGTACAGatgtgAAAACCGAATCCTATTCAGTAATCCTCTCCTGGACCTACTGAATTGCTGATCATCCTGCAGAAAATCATCTGTTGCCTTATTTTCAAATTTCTATAGGCTCAAAGGTCTCTCTCTAACTGTTctaattgttttctttgttaaataagtaTTTGCTTAACGTTGTGCTCTCAGGAGAGAATAAGGCTTTTCACGCAGCATAAAAATTTAGTTGAAGTTATTACAGAAGGAAATCAATAAGTGTTTGTGCAGAAAGTGCTATGCCAAACCAGTGAAACAAATTTTACATGACCTTATGAGATAAAGGTCATAAAAGAATGGATGAACTTGATTTatgtaaaaggaaaaataattctTTGAGGCTGAAGAATAATGATGAAGCTGatcaagagttttttttaaatcatgcatTAAACAATTAAGCATGCTTTTTACATATGAGAGGTTCCTGTACACCCAGAGGAGAAAAGACTGGTTTATTGGCACAGTTCATTCCATTTTGCTGAGATGCATTTTGCCTGAAGTTTGGCATTTTCCTACTTAAATTGCATTCATTTATGAAGCCATGtggttaattttttaaatgtatggtGAAACATGATCCTGGATTGTTGACCAGATAGTTTTGCTTCCAGTATGGAAAGCTGAAATTGTTTTCTAAAATGGCATGTAATGGCAAGGAGCAGCACATTTAAAGGAATAAGCACACTAAAGAGGTAAACAAACAATACAATATTCTGCATAGCTCATTTTGATAACTACTCATCTTCCGGTATTTAAGGTTTGCCACAGTGTGTTAAGAGAATCtgagtttgtttttattccacTTTATTGTGTATGTTTAGACTGAACGGATAGCGTACAGTAATTCCTGAATACAGCGTGGCAAACGTACATAAGAAAACAGTAAGTTATAAccacttgtttttctttctgctcGGTCACCTTAGATGGTTCTCAAAGCTATGTTGCTTTAGCTAGCATGGGTTCGAGAAGACATAGTTAGGTGCAgtagattaattaataaagcaaatgtaaaatattaagcaGATTTACCAAGAAACCTTAAAAGAGGACTTTGCCAGCTCACCCTAAAAGGACCAAGGGTTTGGTGCAATACATAGTAACAAGATGTGACATTAATACCACTTTTATGTGAGTGTTTTATTAGGGTCCCTTTTTAAACCCATTATCTCATTCTGAAGTGCAAAACTACAAGCACAAATGCATCACaaacaaatcctacacctatGCTAATTGGAGTATTATTGCTTGTATGCTTTCTGTCCTCTGCTCCATGTATCATAATCtaactattaataaatatatttaaacacattaaaagacG
>XM_034302766.1
ATAAGGGGCGGGTCTTAGGGTGTATGCACCCTTGGGACCCTAGCAGCAGTATAAAGCATGAAGGTGGCTAATTAGAGCTGTGGTTTAGGATTATTGGAGGCAAAACATCGCTGAGGAATTTCGGTTGTGTGTCACTGAGCAGACAGCAGACGAGcaTGTCGCCACTAGGAGAGCGAGAGGACGCGGCCCTCCGGCAGTGTGTTCAGGCTCGGGCGCAGCTGGAGGGGGCCATAGCTGGAGTGATTAAAGCTGAGGCCCAGCTCAGGGGGAACTCTCGAGAGGTGAAATCTCAGCTGCACAGCTGTATCAGCAGGCATTTGGAGACACTGCGCTCACGAGAGGTTTGGCTGCTCGAGCAGATTGACCTGTTGGAGCACCTGAAGGCAGAAGCTCTGCAGCAGCAGTTACAGCAGCTCCACTGGCTCCGGGGCCAGTTTGACATCCTGATCCATCAACTGCAAAATTCCAACAGCAACAGCCTTGCCAGCCAGCTCACTAGCTGCTTGGAAAAGTTTTCTGGTCTGAATCTGAGTCCTGAGGAAACGCCAGAGATGAGTTTTGAAGCGGACGCCCGCTCCTTGCGCCAAGCCATTACCTCTTTTGGGACCATTTCCACTCAGATGTTGAAGACCTCTGTCTCCAGCCTAACCAGTCAAAAATCAGGCTCTGCTGAGGAAACTTGGCTTGTACAAAACTGCCCCGTCGCTACAAAGAGACAGAAGCTGGATCAAGAATGGGGAGGCCCACTTGCCGAGTGGTTACTCACCAAAGGTCCTGTGACTAGCGCTCCAATTGTATACCAGTCCAGTAATGACCCTCAGGATTGGCTGTTAACCCCTAAAGAGAAACTTCAGGTACATTGCCCACTTGTCCCCTTTGACTTCCAGAAGGCTTGGGGTCAGCTCAAAGATCTAGAGGTGTGGCTCCTGAAGGAGAAGTCTCCTGCACGTGAGCGAACCAGCAGCAATGCCAGCACTAGCAGCTCCGCTTTCTCCATCGAGAAGATTGAAGAGAATGACTTCAAAGAGGAAGGGGAAGTTGAGGGAGTCCAAATGGAGAATGATGAGGAGACTGATAACACTGAGGCTTTTGACGACTGGCTCATCACCCCCAAAAGCAAGTCGATGGAGACCAGCCCTGCTTCAGATGCAGATCAGTGGAAGCAGGTGTTCAAACCCTTTCATGAGACCTTTTCCCCTGACGAATGGCTCCCAAAGTCAGACTGTGGCTCGTGCTGCACCTCACGTGTCAAGGCAGTGGAGATTGAGAACCTGGGGAAGCTCAAGTGCCTGAAAACTCCCCTGTCTTCGGCTGCCGCTGCTCCCACTACTCCCACTCGCTCTTCTGTGAGTCCTGATCCAGTGGAGGTCTGGCTCCAGCAGGTCGTCCCTATAGAAAATAACTGCAAAGCCAATGAGACATGTTCAAGCTTTGCGCAGTGTGTGTGCGACACCAACTGTGGGAAGGAGGCTCTGAGTGCCTGGCTACTTAAGAAAGAGGGCAGAGACAAGAATGGCATTCCCATGGACAAGAATGCCACCAACAAACCAGCCATGttacagcagcaggagcagaagGTGCAGGCCATCCTGGACGCCTGGCTCCATCCCAGCAAAAGAGTAGAAGCTCCATTTCTGTCCTCTCTGTCAGGCTGGGTTTCTCCATGCAAGCTTGGGGGGAAGGAGAAAGCCACTTTTGAGGAGAGGAGCTCACACGTTAATTTGCTCAGAGTTTCTGAGGGTCCCTTCCACAAACCCCTGAAACCTGAGAATTGGGTGCTGGctgaaaagaaacacacagagacctcCAGCAAGCAGAACACACCAGAGCCAGACACTGAAGATGACAAATGGCTCCTACGCAAGAGGGCCAACGTACAGGACAGACTTGGTCTTCCCAAAGtatgtgatttattttcctgtctTAAGCTTGACGGGGACAAGGAGAAGTGGCTACATCACATTCCTGTACAGatgtgAAAACCGAATCCTATTCAGTAATCCTCTCCTGGACCTACTGAATTGCTGATCATCCTGCAGAAAATCATCTGTTGCCTTATTTTCAAATTTCTATAGGCTCAAAGGTCTCTCTCTAACTGTTctaattgttttctttgttaaataagtaTTTGCTTAACGTTGTGCTCTCAGGAGAGAATAAGGCTTTTCACGCAGCATAAAAATTTAGTTGAAGTTATTACAGAAGGAAATCAATAAGTGTTTGTGCAGAAAGTGCTATGCCAAACCAGTGAAACAAATTTTACATGACCTTATGAGATAAAGGTCATAAAAGAATGGATGAACTTGATTTatgtaaaaggaaaaataattctTTGAGGCTGAAGAATAATGATGAAGCTGatcaagagttttttttaaatcatgcatTAAACAATTAAGCATGCTTTTTACATATGAGAGGTTCCTGTACACCCAGAGGAGAAAAGACTGGTTTATTGGCACAGTTCATTCCATTTTGCTGAGATGCATTTTGCCTGAAGTTTGGCATTTTCCTACTTAAATTGCATTCATTTATGAAGCCATGtggttaattttttaaatgtatggtGAAACATGATCCTGGATTGTTGACCAGATAGTTTTGCTTCCAGTATGGAAAGCTGAAATTGTTTTCTAAAATGGCATGTAATGGCAAGGAGCAGCACATTTAAAGGAATAAGCACACTAAAGAGGTAAACAAACAATACAATATTCTGCATAGCTCATTTTGATAACTACTCATCTTCCGGTATTTAAGGTTTGCCACAGTGTGTTAAGAGAATCtgagtttgtttttattccacTTTATTGTGTATGTTTAGACTGAACGGATAGCGTACAGTAATTCCTGAATACAGCGTGGCAAACGTACATAAGAAAACAGTAAGTTATAAccacttgtttttctttctgctcGGTCACCTTAGATGGTTCTCAAAGCTATGTTGCTTTAGCTAGCATGGGTTCGAGAAGACATAGTTAGGTGCAgtagattaattaataaagcaaatgtaaaatattaagcaGATTTACCAAGAAACCTTAAAAGAGGACTTTGCCAGCTCACCCTAAAAGGACCAAGGGTTTGGTGCAATACATAGTAACAAGATGTGACATTAATACCACTTTTATGTGAGTGTTTTATTAGGGTCCCTTTTTAAACCCATTATCTCATTCTGAAGTGCAAAACTACAAGCACAAATGCATCACaaacaaatcctacacctatGCTAATTGGAGTATTATTGCTTGTATGCTTTCTGTCCTCTGCTCCATGTATCATAATCtaactattaataaatatatttaaacacattaaaagacG

Function

symbol description
ncoa4 Predicted to enable transcription coactivator activity. Acts upstream of or within erythrocyte differentiation. Is expressed in digestive system and hematopoietic system. Orthologous to human NCOA4 (nuclear receptor coactivator 4).

NR:

description
nuclear receptor coactivator 4-like isoform X1

GO: NA

KEGG:

id description
K09289 NCOA4, PTC3; nuclear receptor coactivator 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936487.2 True 3382 mRNA 0.45 10 22589052 22598199
XM_034302766.1 False 3324 mRNA 0.45 10 22589052 22597096

Neighbor

gene id symbol gene type direction distance location
prkn park2 coding downstream 164641 22317419 ~ 22424411 (-)
LOC113538327 LOC108263699,LOC108420514 coding downstream 271673 22300917 ~ 22317379 (-)
ubr2 ubr2 coding downstream 289690 22266696 ~ 22299362 (-)
pkdcca pkdcc coding downstream 384077 22180147 ~ 22204975 (-)
LOC113544981 NA coding downstream 678259 21908981 ~ 21910793 (-)
tjap1 tjap1,LOC107728071,LOC107559778 coding upstream 28435 22626634 ~ 22689305 (-)
LOC113540869 dnph1 coding upstream 128707 22726906 ~ 22729307 (-)
LOC113540936 dnph1 coding upstream 140009 22738208 ~ 22742475 (-)
ppp2r5d ppp2r5d,LOC106605890 coding upstream 148535 22746734 ~ 22771957 (-)
si:dkeyp-121d4.3 LOC108263047 coding upstream 192984 22791183 ~ 22814948 (-)
G51169 qki,LOC107739475,LOC107565601,LOC107669572 non-coding downstream 42562 22544227 ~ 22546490 (-)
G51058 NA non-coding downstream 396136 22107092 ~ 22192916 (-)
LOC117596869 NA non-coding downstream 411721 22165739 ~ 22177331 (-)
LOC113538981 NA non-coding downstream 424628 22153348 ~ 22164424 (-)
G51053 NA non-coding downstream 529731 22058153 ~ 22059321 (-)
G51276 NA non-coding upstream 7348 22605547 ~ 22608037 (-)
G51289 mea1 non-coding upstream 49151 22647350 ~ 22743272 (-)
G51389 NA non-coding upstream 291860 22890059 ~ 22890274 (-)
G51390 NA non-coding upstream 292098 22890297 ~ 22890507 (-)
G51462 NA non-coding upstream 472144 23070343 ~ 23070721 (-)
LOC113541574 LOC108263228 other downstream 17184 22565771 ~ 22571868 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other downstream 465403 22035285 ~ 22123649 (-)
G50837 NA other downstream 638863 21949855 ~ 21950189 (-)
plekhh2 plekhh2 other downstream 943540 21611663 ~ 21645512 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other downstream 1110347 21387743 ~ 21478705 (-)
znf318 znf318 other upstream 176156 22774355 ~ 22788804 (-)
G51576 NA other upstream 849709 23447908 ~ 23454217 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other upstream 1418697 24016896 ~ 24040100 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other upstream 1510152 24108351 ~ 24132483 (-)
lyst lyst,LOC107569426 other upstream 1853787 24451986 ~ 24651847 (-)

Expression


Co-expression Network