pbld (LOC108261389,LOC108263388)


Basic Information

Item Value
gene id pbld
gene name LOC108261389,LOC108263388
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10587876 ~ 10593240 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936634.2
CACTGCAGGCACAAGATCCATGGTCTACTGGTTTTGACGACCAGTCTCTTCACAAATCCTAATACAGGACTCTTAGGGACACCTCAGTATCACAAATGGAGATTCCAATATATACTGTCGATGCATTTACTAATTTACCATTTAAAGGAAACCCTGCTGCAGTTTGTCTTTTAGAGAATGAACTGAAGGAGGACCTTTATCAGAAAATAGCAGCTGAAATGAACTTGACTGAGACTGCATTCATCACAAAACTGAAGCCAACAGAAGATTTTTGTTCAGGAGCGAGGTTTGGCTTACGCTGGTTCACCCCTACACATGAGGTCGACCTTTGTGGCCATGCGACACTAGCGTCAGCAGCAGTGCTCTTTTACAAGAAAgAAAACACCAACTCTGTGGTGGCCTTTGAGACTCTGAGTGGAGAGCTGCTGGTGCGTCAGCGAGGTGAATCGTTAGTGCTGGACTTCCCTCTCAATAAAGCAGAAGTCCAGGACAGAAAGAAATTTAATGACATCCTTAAGGCTGCTGTGGGAGATCTGCCTATTCAAGAGGTGTGTTACTGTAAAACAACAAAGGATCTGCTAGTATGTTTGCCTGACACATGTGACAGGTCCGTGCTTACTTCCCTGAACCCGGTGGCCGAGTCTCTGGAAAAAAGTGAGGATGGTGGAAGGATTAAGAGTCTTATCATCACAGTGAAAGGAGCACCAACCTCACAGCCAGGATACGACTTTTACTCCCGTAACTTTGCACCGTGGGTCGGAGTCTTTGAAGATCCAGTGACTGGCTCTGCCCATACAGTCCTTGGTCCCTACTGGTCTGAGAAACTgggaaagaagaaaatgttaGCCTACCAGTGCTCCAGACGTGGCGGTGAGCTTGAGGTGGAACTGAGAGGAAACAACAGAGTTGACATCGCTGGCCAAGCAGTGGTCCTCCTTGAAGGAGTCCTCAAACTCTAGAGAGACACCTATCGAGCTCACTATGAAATCATTTAGCCATATATAGTGCACTGCCAAATTACAGTAATTTTGCTCACTGCCAGTTTTATTGATCCATTTTATTCCAGCAGGCTAACCTGGTAACTAATCATAGGAAATGTGTGTGGTGCTCTAAGAACAGCTTTTTACAGAGTGGTCTAATTCTTTAGTCATCACAAacttagaaaataaataattaaatatctttattacaagaaaacacacaaactctcaAGACGATTTACATACAAAATTCTTTGTTCAGAataataactgtaaaaaaagtttttcctaTTAATAAAAGCATATGACAACTCA

Function

NR:

description
phenazine biosynthesis-like domain-containing protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936634.2 True 1295 mRNA 0.43 9 10587876 10593240

Neighbor

gene id symbol gene type direction distance location
LOC113541130 NA coding downstream 19048 10567357 ~ 10568828 (-)
mtg1 mtg1,LOC107666383,LOC107565923,LOC107696879 coding downstream 25288 10557601 ~ 10562588 (-)
chchd1 chchd1 coding downstream 70919 10513951 ~ 10516957 (-)
si:ch211-51a6.2 si:ch211-51a6.2,LOC108263106,LOC108438184,LOC106606783,LOC107555315,LOC107565929 coding downstream 76029 10492837 ~ 10511847 (-)
zswim8 zswim8,LOC107713895,LOC107743573 coding downstream 99069 10449319 ~ 10488807 (-)
opn3 opn3,LOC107676370 coding upstream 14619 10607859 ~ 10615623 (-)
cdc42ep3 cdc42ep3 coding upstream 57213 10650453 ~ 10659241 (-)
LOC113545523 cyp1b coding upstream 138291 10731531 ~ 10735897 (-)
polr1b polr1b coding upstream 192501 10785741 ~ 10797095 (-)
prdx3 prdx3,LOC107733724,LOC107666469 coding upstream 251791 10845031 ~ 10849713 (-)
G43987 NA non-coding downstream 271428 10315725 ~ 10316448 (-)
G43982 NA non-coding downstream 282794 10291067 ~ 10305082 (-)
G43981 NA non-coding downstream 322288 10265356 ~ 10265588 (-)
G43978 NA non-coding downstream 333938 10253724 ~ 10253938 (-)
G43910 NA non-coding downstream 344994 10241941 ~ 10242882 (-)
G44103 NA non-coding upstream 60474 10653714 ~ 10655844 (-)
G44105 NA non-coding upstream 80106 10673346 ~ 10723668 (-)
G44173 NA non-coding upstream 223432 10816672 ~ 10817292 (-)
G44262 NA non-coding upstream 329069 10922309 ~ 10925258 (-)
G44271 NA non-coding upstream 360265 10953505 ~ 10956492 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 426353 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 579315 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1358992 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1734082 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1804078 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 1115374 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1417691 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1551600 12144840 ~ 12152522 (-)
nin nin other upstream 1841869 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 1931396 12524636 ~ 12534215 (-)

Expression


Co-expression Network