pdcd2 (pdcd2)


Basic Information

Item Value
gene id pdcd2
gene name pdcd2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12759697 ~ 12762641 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936770.2
GTTATAAAAAGATTTACTGTAAGAGCTGAAAGTACCTTCACAGTTCGCATTTTTACTCAGAATCTGGTAGGGACCGCCAGAGCGCGGCCACTTTTCACCACGTCTTCTGTTTCACCCGAACTTTATTACGGACACGCACAAGAAAGCACGTCGTGCTGAAGAGTTAGCTGATGCTGTAGCTGAAACTTAGCACAGATGTCTGGAAACCGTACCGACTCAGAAGGAGAAACTGGGGTTGTGCTGGGCTTTTTAGAGGAGGCAGAGCCTTGGCAGCTCGCTAGCGCTCAGTTTCCCAGTAAAGTCGGCGGGAGGCCCGCGTGGCTGAGCCAGCTGAATTTACCAACCGTCGCCGAGCTCGTGTGTGAGAAATGCCAGCTTCCGACAGTGTTTCTCTTACAGGTTTATGCTCCTATTGTCGGACAAGAGCGGAGTTTTCACAGGACACTGTACGTATTCTGCTGCAAGACACCTGAGTGCTACACTGCAAACGACAACCGGTGCTTTAAAGtgtacaGAAGCCAGTTACCAAGGAAAAATGACTTCTATTCGTATGACCCTCCCCCCGATGAAGAGCCAGCTGCCAGCGCAGATGATGAGCATGTACTAGGATCAGGAGTGAAACTGTGCAGGCTATGTGGCTGCGCCGGACACAAAGCATGTTCACGCTGCCACACAGTCACATACTGCAGCAAAGAGCATCAGGCCATAGATTGGAAACAACGGCACAAGAAAGAATGCAGTAGTGAATCTTTCTCTGCTTCTGATGCTGaaaatttgtttctgtttcctgaGTGGGAGTTGGTAACAGAACCTGAAGAACTCCCAGTAAAGGATGACAAGCCAGCTGACTCAAATTCATTGGAGCAAGCAAATACTGAATCTTCagATTTGGAGGAGAGCGAGTTAGAGTCCATGGCCCTCCATGAATCACAggacagtaaaatgtttcagaaatttAAGGAGCGCATAGCTGCAGAGCCACATCAGgTATTGCGATATTGCAGAGAAGGATCTCCACTTTGGGTGTCATCTGAACATGTGCCCAGCAAAGAAGACGTTCCAAAATGCCCATGTGGCACCAACAGAATCTTTGAATTTCAGATCATGCCACAGTTGCTTAACCACCTAAAGGTGGACAGACCAGATGCCAGCATAGACTGGGGGACGCTGGCCATCTACACATGTGCTGCCAGCTGTGACCAAGGCAAAAACTATTCAGCCGAGTTCATCTGGAAACAAGACTTCTCAGAGGATCAGGGAGTTTAACTACtaaataatatagtatatactgGTTATGGCAACAGTGTTGTCATTTTTCAGAGTGCTGAAaagctaaaaaataaatctttacaccaccaccaccaaatTAAGCATCTCAATTAAGGGGTGCTGAAGTGTCTCACTAAATTAATGAACAGGTTGGTTAATGTCATGAGcagagaaatgttttatttaatgtgggATGAGCCAACTGAAAGAACAGTATACAAGACACAGTAAACGGATAAGAAATTTATTTGCTCGTTTCAAAGCAAATCACTaactgatgcaaaaaaaaaaaaaaaaaaaaatttacatta

Function

symbol description
pdcd2 Predicted to enable metal ion binding activity. Acts upstream of or within erythrocyte differentiation; hematopoietic stem cell differentiation; and regulation of mitotic nuclear division. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including common myeloid progenitor; digestive system; gill; heart; and hematopoietic system. Orthologous to human PDCD2 (programmed cell death 2).

NR:

description
programmed cell death protein 2

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K14801 TSR4; pre-rRNA-processing protein TSR4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936770.2 True 1580 mRNA 0.45 6 12759697 12762641

Neighbor

gene id symbol gene type direction distance location
ccsapb LOC108263641 coding upstream 36456 12718905 ~ 12723241 (+)
acta1b act2,actc1a,LOC105907633,LOC108430668,LOC107678759 coding upstream 42375 12714631 ~ 12717322 (+)
abcb10 abcb10 coding upstream 46908 12702450 ~ 12712789 (+)
trnat-ugu NA coding upstream 91811 12667814 ~ 12667886 (+)
LOC117596891 NA coding upstream 144490 12613042 ~ 12615207 (+)
zgc:153169 LOC108263419,LOC108426824,LOC107725444,LOC107666437 coding downstream 6362 12769003 ~ 12774087 (+)
rab1ab rab1a,LOC103035225,LOC107601860,LOC107676578,LOC107666439,LOC105005759,LOC108263420,LOC107725478 coding downstream 11781 12774422 ~ 12782694 (+)
sertad2b sertad2 coding downstream 46442 12809083 ~ 12844674 (+)
lgalslb lgalsl,LOC107601863,LOC107666541,LOC107676594,LOC107552938 coding downstream 92360 12855001 ~ 12861968 (+)
echs1 echs1,LOC107601864,LOC107743519,LOC107676592,LOC107666378 coding downstream 101269 12863910 ~ 12868452 (+)
LOC117596851 NA non-coding upstream 20471 12733432 ~ 12739226 (+)
G45170 NA non-coding upstream 85074 12674408 ~ 12674623 (+)
G45153 LOC108263325,LOC108267695,LOC108440124,LOC108426833,LOC104952642 non-coding upstream 111291 12647895 ~ 12648406 (+)
LOC113542444 NA non-coding upstream 260678 12489514 ~ 12499019 (+)
G45040 NA non-coding upstream 443827 12315533 ~ 12315870 (+)
G45351 NA non-coding downstream 48278 12810919 ~ 12811250 (+)
G45360 NA non-coding downstream 58215 12820856 ~ 12821389 (+)
G45376 NA non-coding downstream 107362 12870003 ~ 12870223 (+)
G45453 NA non-coding downstream 197449 12960090 ~ 13031136 (+)
G45459 NA non-coding downstream 249305 13011946 ~ 13017600 (+)
LOC117596823 NA other upstream 116393 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 123291 12636320 ~ 12636406 (+)
LOC113544122 NA other upstream 993283 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 1014473 11682864 ~ 11745224 (+)
spef1 spef1 other downstream 166918 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 219765 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 269409 13032050 ~ 13034350 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 735407 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 1450728 14213369 ~ 14286542 (+)

Expression


Co-expression Network