b3gat2 (b3gat2,LOC107718837,LOC107694338,LOC107588666)


Basic Information

Item Value
gene id b3gat2
gene name b3gat2,LOC107718837,LOC107694338,LOC107588666
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14658756 ~ 14672999 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936868.2
TCTCAGTGCCTCGCATGACAGCGCTGTTATTTCTgaggcagcagcagcatcagagCTGGACCTGCGCACTGTTTCTCAGCTCCAGAGCTCAGAAGCGCATCTCAGAGGAGGGATGGAGGCAAAGCCGGCAATGCGTTCAGGGACTGCTTTCTGTGGATCCAATGCAATAACTGTACCTGTTGTTTGTTATTCCTGCCGTCGCTTTCAATGCTGATGAGTGGAGGAATAGGGTTTTGTCTCGCCTTTAGTCTTTTCAGAGGAGACTGGAAACGCACACAGGATGGCTCGGAAGGAGCCGCTGTAAGAACTGCGTGAGTTTGAACGCTGGTGGACGGTGAGAGAAGCGAAATAAGCACAAAAAGCTGCTTGTGTTAAAATATCCCGCCTGACTGAGATGGATTGGTGATCCCGCGTCTCCGGGAGCGTCCTAACTTTGCCATGATGAAGTCCATCTTCTACAGCCGCTTCTTCATCCTGCTGCCGTGGGTGCTGATCGTCATCATCGTGATAGACATCGACACGAAGAGGTCCTCCGTGCGCAACACGGCGCACTCGTACCTGTCCCGGCTGAGCAGCGCGCCGCGGCGGGACGCAGGGGTCCATGCGCTCAACCGCAGcgcgccgccgccgccgctcATCTACGCCATCACACCCACGTACAGCCGCGCCGTGCAGAAAGCCGAGCTCACGCGCTTGGCCAACACTTTCCGCCAGGTCCCGCACTTCCACTGGATCGTGGTGGAGGACTCTGCAAGTCGCACCGAGCTCGTGTCGCGCTTCTTGGCGCGCGGCCGCGTCCCGTACACGCACCTGCACGTGCTCACTCCGCGCCGCTTTAAACGGGCCGGCATGCCACGCGCCACCGAGCAGAGGAACGCCGCGCTGTCATGGCTCCGCGCGCACCGCACTGCCACCGACTCCGGAGTGGTGTTCTTCGCCGACGATGATAACACGTACAGCCTGGAGCTATTTGAAGAGATGCGTTTGACTAAAGGAGTATCCGTATGGCCGGTAGGACTCGTAGGGGGCCGCAGGTATGAGCGCCCCGTTGTAGAAAACGGCAAAGTGGTGGGCTGGTATACAGGCTGGAAGGCTGACCGACCTTTTGCCATCGACATGGCAGGCTTCGCCGTGAACCTCCAAGTGATCCTAGCTAACCCACAAGCTCTGTTCAAGAGGAGAGGAGCCAAGCCAGGCATGCAGGAGTCTGACTTCCTCAAACAAATAACCAAGCTGGAGGACCTGGAGCCAAAAGCTCGCAACTGCACCCAGGTCCTGGTTTGGCACACCCGCACAGAGAAGGTCAACCTGGGCAACGAACCCAAACGGCACCAGGACTCTGTTCTGATTGAGGTCTAGTGGACAGGACTGGCGTGGGAGGCCTCACAGCATATTGACCCAAGTAGCCACTATCCCTGGTACTTTCCCAATTAGTGTCAACCTCTGGACTGAGAGCCTGCTGATTCATGCTGGAATCTCTGTGTGAACTCTGATGTCTGTGTCATCTAACTCAACACTTTGGACCATCCAATTTAGTGAACTTATTTCTGACTGCATAAATTGGCTGGGCATCATTTTGTTAATGAGAATATCCCATCATACTGAGGAAGCATACTGAGTTACTAGTAAAGAACTCAACTTTTAAACCCGTATCATTCGGTACAGCTGTCTTCACTGGCTGCTAGTAGAAACTTTTACCTTAAGACTGAAGAGAAAATCTGGAGTGAAAGCACCTGATGAAATCACAATGATGATTCAATGTCTCTTTCACCCTAGAGAACGTAATATATACTTGGGAACAGTTGGAGAACACTAAGTATATGAAGCTGGAAGCATCTGAAGAAGAGCCAGCTGTTGGAGAAAGAACATTTGGCTTAAATGTACATTCAGTGGACGTACGTAACTGTAGCTATACAAGTTCATTGTATTTAAGCAGTTATTGgataaagctttctgtaaaaagaCTTTATTGCCATGAATGTGTTGCTATGAGCCTGAGAAAATGGACATAAAGAAAGATCCAGGACAATGCCAACACCCTGAACCCAGCACTACAGGAACAAACCTTCGGATTACAACTGTCTTTATTCCAAATGACCCtctttaaaagcaaaaaaa
>XM_034302783.1
TCTCAGTGCCTCGCATGACAGCGCTGTTATTTCTgaggcagcagcagcatcagagCTGGACCTGCGCACTGTTTCTCAGCTCCAGAGCTCAGAAGCGCATCTCAGAGGAGGGATGGAGGCAAAGCCGGCAATGCGTTCAGGGACTGCTTTCTGTGGATCCAATGCAATAACTGTACCTGTTGTTTGTTATTCCTGCCGTCGCTTTCAATGCTGATGAGTGGAGGAATAGGGTTTTGTCTCGCCTTTAGTCTTTTCAGAGGAGACTGGAAACGCACACAGGATGGCTCGGAAGGAGCCGCTGTAAGAACTGCGTGAGTTTGAACGCTGGTGGACGGTGAGAGAAGCGAAATAAGCACAAAAAGTAAATTCTCTCTATGGTTTAAAGATGTATTTAAATAGATAGTGAGCGATTAGATTATGTTCGATGGGGATAGCATTAAGTTCTTGTTGATTCCGCATCCTTTAGGCTGCTTGTGTTAAAATATCCCGCCTGACTGAGATGGATTGGTGATCCCGCGTCTCCGGGAGCGTCCTAACTTTGCCATGATGAAGTCCATCTTCTACAGCCGCTTCTTCATCCTGCTGCCGTGGGTGCTGATCGTCATCATCGTGATAGACATCGACACGAAGAGGTCCTCCGTGCGCAACACGGCGCACTCGTACCTGTCCCGGCTGAGCAGCGCGCCGCGGCGGGACGCAGGGGTCCATGCGCTCAACCGCAGcgcgccgccgccgccgctcATCTACGCCATCACACCCACGTACAGCCGCGCCGTGCAGAAAGCCGAGCTCACGCGCTTGGCCAACACTTTCCGCCAGGTCCCGCACTTCCACTGGATCGTGGTGGAGGACTCTGCAAGTCGCACCGAGCTCGTGTCGCGCTTCTTGGCGCGCGGCCGCGTCCCGTACACGCACCTGCACGTGCTCACTCCGCGCCGCTTTAAACGGGCCGGCATGCCACGCGCCACCGAGCAGAGGAACGCCGCGCTGTCATGGCTCCGCGCGCACCGCACTGCCACCGACTCCGGAGTGGTGTTCTTCGCCGACGATGATAACACGTACAGCCTGGAGCTATTTGAAGAGATGCGTTTGACTAAAGGAGTATCCGTATGGCCGGTAGGACTCGTAGGGGGCCGCAGGTATGAGCGCCCCGTTGTAGAAAACGGCAAAGTGGTGGGCTGGTATACAGGCTGGAAGGCTGACCGACCTTTTGCCATCGACATGGCAGGCTTCGCCGTGAACCTCCAAGTGATCCTAGCTAACCCACAAGCTCTGTTCAAGAGGAGAGGAGCCAAGCCAGGCATGCAGGAGTCTGACTTCCTCAAACAAATAACCAAGCTGGAGGACCTGGAGCCAAAAGCTCGCAACTGCACCCAGGTCCTGGTTTGGCACACCCGCACAGAGAAGGTCAACCTGGGCAACGAACCCAAACGGCACCAGGACTCTGTTCTGATTGAGGTCTAGTGGACAGGACTGGCGTGGGAGGCCTCACAGCATATTGACCCAAGTAGCCACTATCCCTGGTACTTTCCCAATTAGTGTCAACCTCTGGACTGAGAGCCTGCTGATTCATGCTGGAATCTCTGTGTGAACTCTGATGTCTGTGTCATCTAACTCAACACTTTGGACCATCCAATTTAGTGAACTTATTTCTGACTGCATAAATTGGCTGGGCATCATTTTGTTAATGAGAATATCCCATCATACTGAGGAAGCATACTGAGTTACTAGTAAAGAACTCAACTTTTAAACCCGTATCATTCGGTACAGCTGTCTTCACTGGCTGCTAGTAGAAACTTTTACCTTAAGACTGAAGAGAAAATCTGGAGTGAAAGCACCTGATGAAATCACAATGATGATTCAATGTCTCTTTCACCCTAGAGAACGTAATATATACTTGGGAACAGTTGGAGAACACTAAGTATATGAAGCTGGAAGCATCTGAAGAAGAGCCAGCTGTTGGAGAAAGAACATTTGGCTTAAATGTACATTCAGTGGACGTACGTAACTGTAGCTATACAAGTTCATTGTATTTAAGCAGTTATTGgataaagctttctgtaaaaagaCTTTATTGCCATGAATGTGTTGCTATGAGCCTGAGAAAATGGACATAAAGAAAGATCCAGGACAATGCCAACACCCTGAACCCAGCACTACAGGAACAAACCTTCGGATTACAACTGTCTTTATTCCAAATGACCCtctttaaaagcaaaaaaa

Function

symbol description
b3gat2 Predicted to enable galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity. Predicted to be involved in carbohydrate metabolic process and chondroitin sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in Barrett's esophagus and schizophrenia. Orthologous to human B3GAT2 (beta-1,3-glucuronyltransferase 2).

NR:

description
PREDICTED: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity molecular_function

KEGG:

id description
K10157 B3GAT2; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936868.2 False 2118 mRNA 0.52 5 14658756 14672999
XM_034302783.1 True 2223 mRNA 0.51 4 14658756 14672999

Neighbor

gene id symbol gene type direction distance location
asrgl1 asrgl1,LOC105911569,LOC103032358,LOC108442615,LOC107695955,LOC107585330,LOC107673965 coding upstream 46786 14595202 ~ 14611970 (+)
eef1a1a LOC108263602,LOC108441988,LOC108442579,LOC108258313,LOC107704332,LOC107602754 coding upstream 307521 14346597 ~ 14351235 (+)
slc17a5 slc17a5,LOC107673875,LOC107585335,LOC107693696,LOC107588676 coding upstream 317468 14331492 ~ 14341288 (+)
rin2 rin2,LOC105893488 coding upstream 330457 14296334 ~ 14328299 (+)
si:dkey-187a12.4 LOC108263835 coding upstream 365893 14289382 ~ 14292863 (+)
slc2a15a slc2a15a,LOC108262874,LOC103035008,LOC108442702,LOC107716293,LOC107673883,LOC107708408,LOC107696166,LOC107585370 coding downstream 184930 14857929 ~ 14871099 (+)
fgf8a fgf8a,fgf8,LOC107673879,LOC107716294,LOC107696243,LOC108442712,LOC107585369 coding downstream 225823 14898822 ~ 14904713 (+)
fbxw4 fbxw4,LOC107707737,LOC107716323 coding downstream 237900 14910899 ~ 14936204 (+)
wbp1la wbp1l coding downstream 273834 14946833 ~ 14961193 (+)
cnnm2a cnnm2,cnnm2a,LOC107585325,LOC107716327,LOC107673921,LOC107588659 coding downstream 304726 14977725 ~ 14994070 (+)
LOC113541837 NA non-coding upstream 32266 14617608 ~ 14626490 (+)
G46337 NA non-coding upstream 270445 14388029 ~ 14388311 (+)
G46217 NA non-coding upstream 370469 14286650 ~ 14288287 (+)
G46176 NA non-coding upstream 475110 14183437 ~ 14183646 (+)
G46175 NA non-coding upstream 475563 14182991 ~ 14183193 (+)
G46638 NA non-coding downstream 292907 14965906 ~ 15011989 (+)
G46713 NA non-coding downstream 341124 15014123 ~ 15015181 (+)
G46765 hps6 non-coding downstream 406814 15079813 ~ 15084310 (+)
G46833 NA non-coding downstream 746030 15419029 ~ 15419642 (+)
G46849 NA non-coding downstream 800202 15473201 ~ 15473870 (+)
cgas NA other upstream 290656 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 372214 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 1157706 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 1624406 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 1653433 12982406 ~ 13005323 (+)
borcs7 borcs7 other downstream 299569 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1120407 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 1397715 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 1451628 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 1561515 16234514 ~ 16237542 (+)

Expression


Co-expression Network