ptk7b (LOC108263634,LOC108426849)


Basic Information

Item Value
gene id ptk7b
gene name LOC108263634,LOC108426849
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12190217 ~ 12289852 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936926.2
gagagagagagagagagagagagagagagagagagagtgagtgtgtgtgtgaaagagggaCAGGGGGAAGAGAGATGTGAGATACACCGGCTTTGCTGTAGGCTCTCACCGGACTGATCAGGTCACTAGTCCAAGCCCGACACCCGGGACACACACGTTAAGCAAGACGTCGCGCGCGCGAGTTGCTTCCTGTGCCTGCACTAACTCCCATGCTGTGTGTTCCTGGAGCTCTGAAAGGTGTATTCTGTGTCAGCCTCGTAAACCGAGATCGTCTCGATTTCTTCCTCAGTGTTTGACGCGTACCTGTTTGCTTTCTTCGGCTTGATTGGACCAGCAGCAGACATGGACATATCGGACACAtcagacacatcagacacacagcacagaagAGCAAGCCAAAGCTCCACAGGCTTTAGGAATAGCAGAAGATGGACTCTTTTCCCTATCCGGATCCACTGTTTCCTCGCCATCGCTGTCTTCTGCACGAAGGtgctgtgtgtgcagTCTTCATCACTGCACTTTTCCAAAGAGCCCCAGTCTCAGGATGCGCTGCACGGTCGCAGTGCCATGCTGCGCTGTGAGGTCAGTGAAGCGGCTGGCGTGCGATACTCGTGGCTGCAGGACGGCCAGCCAGTACAGGACTCAGAGCGACGTTTCATGGAGGACGGAAACCTCAAATTTACTGCAGTTGATCGCCATATCGACACAGGCAACTTCCAGTGTGTGGCCAGAAGCTTGACCTCTGGGGAGGTGGCCACATCCACCAACGCCTCCTTCAACATCAAGTGGCTTGACAGCGGCCCGGTGTCTCTGAAAGTACCTGCCTCGGTGGAGGAGATCGATGATGCTGAACAAATCATATTACAGTGCCAGATTGATGGACACCCAAGGCCGAACAGTAAGTGGTACAAAGATGGAGTATTACTAGCAGTTAAGGAGAGAAGCCTCACTCTGAGAAAACCTGTCCCTGTAGATTCAGGCACGTATAGCTGCTGCGCACGCAACGGAGCCGGCCAAGTCTGCAGCAACTCCAACTTCACCCTCAGCATTACAGATAAGACGATTCCTCGTGTGCTGGTGGCTCCAGAGGATCAGGTGGTGTTCAGGAATGAAGAGGCTGTGTTTCACTGTCAGTTCTCCGCCAAACCTCCACCTGTTGTAGAGTGGTTCCACGAGTCAGAGCCGGTAATCAACAAGCCACGggttGTAGTGTATAATAACGGCACTCTGCGCATCACTCAGGTGAAGCCTCGGAGTACAGGTCGCTACACTTGTGCGGTTCACTATGGAACTGATAGGCAGGTGCAGGTAGAAGCCACTCTGCACATCGCAGAGATTAATGATATGGACAGCAGGATGTTGAAGTTCTTCTCTGCTAACGACGTGGAACAGATTACGTGTTCCCCTCCACATGGTCACCCCAAGCCTGTGGTGTGGTGGGAGAAGGATGGTGCTCGAGTGCCCACCGAGGGCCGGGTGCACCAGCAGGACGGAGACCTGATCTTTAACCCCACTGCGGTTGGAGACTCAGGAACATATATGTGCATGGCACAGAATAAGGCAGGTCAGAAGCGACAGGAAGTCAGTGTCACCGTGGCTGGTCCACCGGAATGGGTCGCTAAACCCCAGGACACTGAGATGGAGGAGGGGCAGCCTGGGTACCTGCACTGCAATGtccaggccacgccccctgccCAGGTCACCTGGTACCGCAACATGCAGGAGATCAGCGAGGAGAAATCTCAGTATAAACTCTTCCCAAATGGGACTTTGAGGATAAACAATGTGGAGGTGTATGATGGACTGGTCTATAACTGTGTTTGCAAGACTGCAGGTGGTACCCTAAATGGACAGGCCAAAGTCTACGTacttgagaAGCTGAAGTTCACCCCTGCTCCCCAGTCCCCTCAGTGTCTGCAGCTGGATAAAGAGGCCAGTGTTCAGTGCTCTGCTACGGGCCGAGAGACTCCTACTATACACTGGACCAAAGCAGATGGTAGCGCTATCCCTGCTCATGTAAAGCAAATCAATGGGACTCTACAGTTTGAGAAAGTGACACGGAGTGATGCGGGGAACTACACTTGTGTAGCCAGTAACCGTCCACAGGGAGAGATCAGAGCCTATGTGTCTCTCACTGTAGGAGTGTATACAGAGTTTAAGGTGGAACCGGAGTACACTACAGTGTATCAGGGTCACACAGCGACACTGCACTGCCAGGCTACAGGAGACCCCCAGCCCTACATCCAGTGGATAGTCAAAGACAAAGCGCTGTCTGTCAGCACCAGCAGATTTCAAGAGATGCCCAATGGTTCTCTGATCATCAGCGATGTTACTACTGCTGACACAGGAAAGTACACTTGCATTGCTGGCAACAGCTGTGGCATCAGACATCGAGTTGCACAGCTCTACGTCGTAGAGAAGCCAAAGCATGATCGTGACAATGATGAGGGAAAGACACCATATAAGATGATCCAAACCATTGGTCTGTCTGTGGGGGCAGCTGTGGCCTACATCATCGCCGTGCTCGGCCTTATGTTCTACTGTAAGAAGAGACGCAATGCCAGGAGACTGCAGAAGGGACAGGACGGGGAAGAGCCGGAGATGGAGTGCcttaatgGAGGCGCTATGCAGCACAATGGCCAAACTACAGCTGAGATCCAGGAAGAGGTGTCTCTTACTAATCTAGAGACTGTGTCTACAGCTGAAAAACACCATAGCAACACAGACAAGTTCCACTTTCCCAGAGCAGACTTACAGACCATCACTACACTAGgcaaaGGGGAGTTTGGTGAGGTGTTCTTGGCCAAAGCACAGGGGATTGAGGAGGGTGAAGAACAGACTGTGGTTCTGGTGAAGAGTCTGCTGAGCAGGGACGAGCTCTCGCAGGCTGAGTTCAGGCGGCAGGTCGACATGTTCAGTAAACTGAATCACACCAACATTGTGCGCCTGCTTGGCCTCTGCAAAGACACAGAACCCCATTACATGATCCTGGAATATATAGACCTGGGTGATCTCAAACAGTTCTTGAGGATATCGAAAAGCAAAGATGAGAAACTCAAACCGCAGCCTATCAGTACCAAAACCAAAGTGTCCATCTGTGCCCAAGTGGCTGCTGGGATGGAGCACTTGTCCAACCAGCGTTTTGTCCATAAAGACCTGGCAGCCCGGAACTGCCTAATTAGTGGAGAGAGACATGTCAAGATTTCTGCACTTGGCCTGAGCAAAGACGTCTACAGCAGtGAGTATTACCAATACAGGCAGAGTTGGATCCCTTTGCGCTGGCTACCTGCAGAGTCTGTCTTTGAAAATGACTTTTCCACCAAATCTGATGTGTGGGCTTTTGGTGTGCTGATGTGGGAAGTGTTCAGCCATGGTGAGCTGCCGTACTCCTCACTGAGCCATGAGGACGTACTCGAAGGCCTTCAAGCTGGCACGCTGAAGCTTTCTGCTCCCGAGGCCTGTCCTTCTAAAGTCTACAAACTGATGAGTCGGTGCTGGGCTCCCAGTCTGAAAGAGCGGCCATCTTTCAGTGAGCTAATCCAGGCTCTGGGAGATATTCCATTGGACAGCAAGGTGTGAGGACTACATCTGCTCCTACTTCCATCTGGTGTGGTGGACCCACACCTATCCTGTTCTGCTCTGCTACAATCACAGACTCGCTCAGACTGGGTCCCACACATTTCAGGGAGCAAGTGTGTATGAGTGACTAACAGGGATGTTGATATCAGGgcaatgtgtgcgtgtgtgtgcaagtgtgtgcatGAGCGTGCAGGTGtacttgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgaggaccCCAGAGACTTCTATCTGCCTTAACCATGGCATTAAAGGACACGCTGTTGAGCATTCAATTTCAATGTCCTGTTTATGCTTTTAATTTTCAGCTCTGTCTATTTTTTACCCTGAGATCTCCTTCTTTATTTCTGGAGCCTCAGACGACCTTCAGGGGGTACGATCTTTGAACTTGATCTTTCACCTCTGCTTGCGCAGGACAATCCAACCCCAATTGGGGCAAATCCCACGATGTGGCTCCGGAAAATGCTGGACTCTGCATTCAATGCTCATCTAATGGACTTGAAGTTGTTGTGCGAATAGTTGCGtgtcagaatgtgtgtgtccttgtgtgtgcttttttttttagttttgcaatGTAGATCAGTGTGCAAGTCAAACAGAGCAAATTTGCTATGAAAGGAGATGGCCTGTTATGGCTCTAAACTGCAGAATAAATGAATACTTCTAGTATATGGTTTGTACACATGGAAGCGCAAGGAGAGTTAGAGATGTTTTATTACAATTGtacgttttatttttttaatatttgcctTTTCTTACCTTGTGGTGCTCATATGGGACAATAATATTTTGATGGAGAGAACTTGCAATACATCTTATTGCCTACAAGCCTAAAGCCATGATGAACAATGTATTCAAGATTTCTGCATAGCGATATTTATAACCACCTCACTGTATTATTGCTTGGCAAAGTCCCTGTTACGTTCATTAATACCAACACCATGCACTAATTTCACTTAAAATCTTGTTTTATATAATAGTTTATTTCAATGTAGAAGGATGTATGTGAGCCTTTATTTATGATGAAggttctgtcttttttttatatgtttttaatagaAAGGTACTCTGAGATCCTTTTATACGATTATGTACTCCACTCATTATAACGTCTCATTTTGCAGTTTGGAAAGTGTTGTAGGGCAGCTGAGAGTTTCAGTGGTCACCATCATTTAAGGGCCACAAGTGCCTAAGACATGAAGGATTATTTACAACGTAgctttcagtttattttaaacagttgCTTTGTTTTTATGAACTGTTTCATATCTAATCTTTTCATATGATGTAATGATTCTTTTCtgttggtttgttttatttctctgaatAAACACATGGTCCTTgcctttttaataattacatgcTAGGCACTCCCACTTAAAAGTGTTTTGTTAGTCTAGTTTAGCAAAGGTCAAAATAATCACAGTGTATGCTGCTCACATTAAACATTCACATTTGTAACAA

Function

NR:

description
PREDICTED: inactive tyrosine-protein kinase 7

GO: NA

KEGG:

id description
K05127 PTK7, CCK4; PTK7 protein tyrosine kinase 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936926.2 True 5088 mRNA 0.48 20 12190217 12289852

Neighbor

gene id symbol gene type direction distance location
srfb srf coding downstream 3604 12156217 ~ 12186613 (-)
LOC113542467 lrrc27 coding downstream 160073 12021991 ~ 12030144 (-)
LOC113540195 inpp5a coding downstream 216712 11817728 ~ 11973505 (-)
valopa LOC100305024,LOC108426856 coding downstream 403582 11772007 ~ 11786635 (-)
LOC113538140 LOC108262825,LOC108426858,LOC107689348,LOC562831,LOC107663569,LOC107750139,LOC106576778 coding downstream 540015 11595230 ~ 11650202 (-)
klc1b klc4,LOC108263390,LOC108426848,LOC102210354,LOC102306811 coding upstream 1935 12291787 ~ 12330928 (-)
cdkl1 cdkl1,LOC105890986,LOC107705442,LOC107602970 coding upstream 53383 12343235 ~ 12356768 (-)
map4k5 map4k5 coding upstream 68420 12358272 ~ 12401487 (-)
sav1 sav1,LOC106517965,LOC107602930 coding upstream 132429 12422281 ~ 12431644 (-)
pygl pygl,LOC107683467,LOC107736703,LOC107602977,LOC107553219 coding upstream 182675 12472527 ~ 12485626 (-)
G44848 NA non-coding downstream 182188 12007826 ~ 12008029 (-)
G44820 NA non-coding downstream 276188 11912210 ~ 11914029 (-)
G44818 NA non-coding downstream 350395 11839452 ~ 11839822 (-)
G44582 NA non-coding downstream 802271 11387206 ~ 11387946 (-)
G44275 NA non-coding downstream 1209922 10978646 ~ 10980295 (-)
G45236 NA non-coding upstream 475 12290327 ~ 12303541 (-)
G45249 NA non-coding upstream 78661 12368513 ~ 12369349 (-)
LOC117596889 NA non-coding upstream 337194 12627046 ~ 12627481 (-)
LOC117596888 NA non-coding upstream 337825 12627677 ~ 12628388 (-)
LOC117596890 NA non-coding upstream 338620 12628472 ~ 12629256 (-)
tmem254 tmem254 other downstream 37695 12144840 ~ 12152522 (-)
pwwp2b pwwp2b other downstream 168749 12010931 ~ 12021468 (-)
trnag-gcc_1 NA other downstream 481533 11708614 ~ 11708684 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 2028694 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 2181656 9999959 ~ 10008561 (-)
nin nin other upstream 145257 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 234784 12524636 ~ 12534215 (-)
LOC113539135 NA other upstream 341361 12631213 ~ 12633418 (-)
trnae-cuc_8 NA other upstream 349400 12639252 ~ 12639323 (-)
trnak-cuu_1 NA other upstream 349678 12639530 ~ 12639602 (-)

Expression


Co-expression Network