dmac2l (atp5s)


Basic Information

Item Value
gene id dmac2l
gene name atp5s
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12330050 ~ 12340992 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936991.2
aacagttaaagGCGTCCCTGACTACAAACTGTTTGCTCTCCTCTACTGTACAAAGCCCAAACATCATCATTCCTTTTCTGGGTTTGAAACAGCTTTAATAATCTCCAGCGGCTTCATTCAGTCACTGTGAATGTtaaCAGTAGCTATGAGACTCCTGAGTGGGACAGCGCGgtgtgttttatacacacactcccgGTGTGCACCGCCAGGGGGCAGCAGAGGGTTCTGGGGCTGGCTCAACGCCGTCTTCAACAAGGTTGATTATGAGCGGATTAAGGCAGTTGGTCCAGACCGTGCGGCTGCTGAATGGCTCCTAAGGTGTGGGGCTAAAGTTCGTTTCCGTGGTTTCGACCGCTGGCAACATGATTATAACGGGCTCCCGACCGGGCCACTGGGTCGATATCAAATCCAGGCCATCGATGCCACAGAATCCTGCATCATGTACCGGGGATTTGATTACCTGGatggtctggagcatgtAGAGGAGATAAAGCTGcgaaagtgtatatatatagaggATACGTGTCTGGAGCGCTTGAGTAAGACAGAGAAGCTGCAGAACAGCATGAGGACGATGGAGATTGTCTCCTGTGGCAACGTGACAGACAGAGGCATCATCGCTCTTCATCACCTGAGGAACTTGGAGTCCTTGTTCCTCAGTGACCTACCAGgcgtgagagagaaacagaaaacaacaaacacactgcaaaccGCACTACCCAAACTCACCATAGAACTTGACCTGGCTTAGCCAATCATAGCTTTCTTTGCAGCCTAGATTGACAAATCGGAGACCTGAGAAGCGATGCGATGTTATTTATAGAAACAGTGTGTTTAAACTTTCTCTGAGTTCTTAAGAAACTGATGTGTGTAGTATTAAAGAagcaaagtttatattaaatatgtactGCTGTTTATGTCTGTCTGAAAA
>XM_026937000.2
CTCAACGTGAACTGACCAATGGGAGATCAGAACGTGCTGACGTCAGCTGGCGTGAGTTGAAAGGTCATGAAAGTGGCGCATGGCGGAGGTGAAAAGTAAACAACACTGGAAAAGtaaCAGTAGCTATGAGACTCCTGAGTGGGACAGCGCGgtgtgttttatacacacactcccgGTGTGCACCGCCAGGGGGCAGCAGAGGGTTCTGGGGCTGGCTCAACGCCGTCTTCAACAAGGTTGATTATGAGCGGATTAAGGCAGTTGGTCCAGACCGTGCGGCTGCTGAATGGCTCCTAAGGTGTGGGGCTAAAGTTCGTTTCCGTGGTTTCGACCGCTGGCAACATGATTATAACGGGCTCCCGACCGGGCCACTGGGTCGATATCAAATCCAGGCCATCGATGCCACAGAATCCTGCATCATGTACCGGGGATTTGATTACCTGGatggtctggagcatgtAGAGGAGATAAAGCTGcgaaagtgtatatatatagaggATACGTGTCTGGAGCGCTTGAGTAAGACAGAGAAGCTGCAGAACAGCATGAGGACGATGGAGATTGTCTCCTGTGGCAACGTGACAGACAGAGGCATCATCGCTCTTCATCACCTGAGGAACTTGGAGTCCTTGTTCCTCAGTGACCTACCAGgcgtgagagagaaacagaaaacaacaaacacactgcaaaccGCACTACCCAAACTCACCATAGAACTTGACCTGGCTTAGCCAATCATAGCTTTCTTTGCAGCCTAGATTGACAAATCGGAGACCTGAGAAGCGATGCGATGTTATTTATAGAAACAGTGTGTTTAAACTTTCTCTGAGTTCTTAAGAAACTGATGTGTGTAGTATTAAAGAagcaaagtttatattaaatatgtactGCTGTTTATGTCTGTCTGAAAA
>XM_034302795.1
CTGCGTATAAATTCGGCATGATGtaaCAGTAGCTATGAGACTCCTGAGTGGGACAGCGCGgtgtgttttatacacacactcccgGTGTGCACCGCCAGGGGGCAGCAGAGGGTTCTGGGGCTGGCTCAACGCCGTCTTCAACAAGGTTGATTATGAGCGGATTAAGGCAGTTGGTCCAGACCGTGCGGCTGCTGAATGGCTCCTAAGGTGTGGGGCTAAAGTTCGTTTCCGTGGTTTCGACCGCTGGCAACATGATTATAACGGGCTCCCGACCGGGCCACTGGGTCGATATCAAATCCAGGCCATCGATGCCACAGAATCCTGCATCATGTACCGGGGATTTGATTACCTGGatggtctggagcatgtAGAGGAGATAAAGCTGcgaaagtgtatatatatagaggATACGTGTCTGGAGCGCTTGAGTAAGACAGAGAAGCTGCAGAACAGCATGAGGACGATGGAGATTGTCTCCTGTGGCAACGTGACAGACAGAGGCATCATCGCTCTTCATCACCTGAGGAACTTGGAGTCCTTGTTCCTCAGTGACCTACCAGgcgtgagagagaaacagaaaacaacaaacacactgcaaaccGCACTACCCAAACTCACCATAGAACTTGACCTGGCTTAGCCAATCATAGCTTTCTTTGCAGCCTAGATTGACAAATCGGAGACCTGAGAAGCGATGCGATGTTATTTATAGAAACAGTGTGTTTAAACTTTCTCTGAGTTCTTAAGAAACTGATGTGTGTAGTATTAAAGAagcaaagtttatattaaatatgtactGCTGTTTATGTCTGTCTGAAAA
>XM_034302796.1
GTCATGAAAGTGGCGCATGGCGGAGGTGAAAAGTAAACAACACTGGAAAAGTAGCTATGAGACTCCTGAGTGGGACAGCGCGgtgtgttttatacacacactcccgGTGTGCACCGCCAGGGGGCAGCAGAGGGTTCTGGGGCTGGCTCAACGCCGTCTTCAACAAGGTTGATTATGAGCGGATTAAGGCAGTTGGTCCAGACCGTGCGGCTGCTGAATGGCTCCTAAGGTGTGGGGCTAAAGTTCGTTTCCGTGGTTTCGACCGCTGGCAACATGATTATAACGGGCTCCCGACCGGGCCACTGGGTCGATATCAAATCCAGGCCATCGATGCCACAGAATCCTGCATCATGTACCGGGGATTTGATTACCTGGatggtctggagcatgtAGAGGAGATAAAGCTGcgaaagtgtatatatatagaggATACGTGTCTGGAGCGCTTGAGTAAGACAGAGAAGCTGCAGAACAGCATGAGGACGATGGAGATTGTCTCCTGTGGCAACGTGACAGACAGAGGCATCATCGCTCTTCATCACCTGAGGAACTTGGAGTCCTTGTTCCTCAGTGACCTACCAGgcgtgagagagaaacagaaaacaacaaacacactgcaaaccGCACTACCCAAACTCACCATAGAACTTGACCTGGCTTAGCCAATCATAGCTTTCTTTGCAGCCTAGATTGACAAATCGGAGACCTGAGAAGCGATGCGATGTTATTTATAGAAACAGTGTGTTTAAACTTTCTCTGAGTTCTTAAGAAACTGATGTGTGTAGTATTAAAGAagcaaagtttatattaaatatgtactGCTGTTTATGTCTGTCTGAAAA

Function

symbol description
atp5s ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s

NR:

description
ATP synthase subunit s, mitochondrial

GO: NA

KEGG:

id description
K07554 ATPeF0S, ATP5S; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936991.2 True 931 mRNA 0.47 5 12330050 12340992
XM_026937000.2 False 911 mRNA 0.48 5 12333000 12340992
XM_034302795.1 False 820 mRNA 0.48 5 12333192 12340992
XM_034302796.1 False 842 mRNA 0.48 5 12333063 12340992

Neighbor

gene id symbol gene type direction distance location
LOC113544275 LOC108262946,LOC108426851,LOC107708194 coding upstream 187021 12134099 ~ 12143029 (+)
LOC113542347 stk32c,LOC107670801,LOC102790870 coding upstream 209537 12037501 ~ 12120513 (+)
nkx6.2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding upstream 514398 11812785 ~ 11815652 (+)
trnag-ccc NA coding upstream 738645 11591335 ~ 11591405 (+)
hs3st1l1 LOC108262815,LOC108426770,LOC107720583,LOC107565063,LOC107750130,LOC107686529,LOC107562391 coding upstream 1035070 11254621 ~ 11294980 (+)
atl1 atl1,LOC107736665,LOC107705445,LOC107682422,LOC107602974,LOC107553217 coding downstream 62957 12403949 ~ 12418948 (+)
tmx1 tmx1,txnd1,LOC105015420,LOC103371388 coding downstream 176561 12517553 ~ 12522746 (+)
frmd6 frmd6 coding downstream 232995 12573987 ~ 12594144 (+)
LOC113545271 NA coding downstream 260086 12601078 ~ 12603749 (+)
LOC113545096 NA coding downstream 266537 12607529 ~ 12609839 (+)
G45040 NA non-coding upstream 14180 12315533 ~ 12315870 (+)
G44972 NA non-coding upstream 171822 12156248 ~ 12158228 (+)
G44974 NA non-coding upstream 173928 12154384 ~ 12156122 (+)
G44970 NA non-coding upstream 185648 12144117 ~ 12144402 (+)
G44891 NA non-coding upstream 197873 12131807 ~ 12132177 (+)
LOC113542444 NA non-coding downstream 148522 12489514 ~ 12499019 (+)
G45153 LOC108263325,LOC108267695,LOC108440124,LOC108426833,LOC104952642 non-coding downstream 306903 12647895 ~ 12648406 (+)
G45170 NA non-coding downstream 333416 12674408 ~ 12674623 (+)
LOC117596851 NA non-coding downstream 392440 12733432 ~ 12739226 (+)
G45351 NA non-coding downstream 469927 12810919 ~ 12811250 (+)
LOC113544122 NA other upstream 563636 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 584826 11682864 ~ 11745224 (+)
trnag-gcc NA other upstream 623045 11706935 ~ 11707005 (+)
dntt dntt other upstream 1122188 11099593 ~ 11207862 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 1721346 10594574 ~ 10608704 (+)
trnay-gua NA other downstream 295328 12636320 ~ 12636406 (+)
LOC117596823 NA other downstream 298325 12639317 ~ 12643304 (+)
spef1 spef1 other downstream 588567 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 641414 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 691058 13032050 ~ 13034350 (+)

Expression


Co-expression Network