si:dkey-228d14.5 (LOC108262905)


Basic Information

Item Value
gene id si:dkey-228d14.5
gene name LOC108262905
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18898163 ~ 18903520 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937044.2
TGAAACACATGGTTGCCCTGGTGTTCCCATTCAAAACGCCCTGGGTTACTGTGTAGGAAATAAGACaggaacaaaaacacattttattttgtccagcacattttaaaacctGAGTTTGGAACATTGAGGGTAGATTTATTTCACTGCTATCATTGTGCAGTGTGATTAGTGAGGAGAGTGCTCGCTGAATGAATAAGCACTGGCCTAAGCAAACAGTGAGATAAAGTTGAGTTGGCCCAGCCCAAATATTCTCATTCCTGCTTTCTCACAGGGCCATGTATTGCAAGGAGTGGTTAAAGGAGACAGAAGGTTTTAAATCTGAAGAATGTCGCTTGGTTAGTGGATGACATGGCTAACCGGTAAAGTCTTCTCTTCTGGAAGAAACTTGCAGTACAGTTGCTGAGGTGCTGAGAATAGAAACACAATGAAGCGGACACAGCACTTGGGTGGTTAAATCTATTTGGAAGAGAATTACTGACACCCTCAGAATCAGATCTCCTAAATCATTTGGTAACTCACCTGAAGAGACATGGCATTCTGGATTATTTTACCCATCAGTCTCAGTGCTGTTTCATTCATCGGATGCTGGACGGTGTATGGACTTGCATTAAGATTCCACCATGTCTGCTCACTCAGTAACTGGGAATACAGCAACTCATGTCTGACAAATGAAACTGGAAGTTGCTGCACGGGACATAACATACCCACCATAAGTGGAAGTGGAACCAACTTTCCAGAAAATTCCCTGTTTAGTGCTACAATCAATGGGGCTTCATTTTTATTTGTGGTTTTCAGTATTTTCCATCATGCACATATCGTGAAAAAGTGCAGTGTGCACTCTCTCCTCAGTAAATGTGCCATGGTCTTTGGTTGTATCGCTGGAGTTGGAGCCTTTGTGGCTGGAAACTGCAATCCAGCAGAGCTGATGTTTCTGCATAACCTAGGTGCTGCTTTGAGCTTCGTGTGTATCTGCTTCTACACGGTGTTGCTTACATTTCTGACAAGCAGGTGCATGCTAACTGGACTCGAGCGTGCCCTCTACCCAATACGCATCGTCTTCTCCAGCATTCAGGTCATACTGACCATCCTCTATTGCATCTTCTTTTCTCAAAAGGAGTTCTACTACAGGCACATTTCTGCCATTTTCGAGTGGACACTCAGCATGAACCTGGAGCTCTTCGAACTCAGCTATGCTGTAGagttttatttcttctcttctgCAATGCTTTCGGTACTTCTCTCAAACAGGGATGAAGAGAGCACTATCATTTTGTCCTGATGGCTGACATTTTGCCTTCTCTTCCTTTAGGTTATTAAGCAACAAATCTTTATTTCTTAGTAGCTTGTGTTCAAATTGGAAAGTCTAGAGAGATTGTTAGAGATGCAAACCTGTAAACTGGCCTGTGACTCAGGCATGTAAGCATATTTTTTGCACAAATGCAACCCTCAGCCTTGGTTGGAATTTCATACCTGCAgtattctgtaaatgttaaatatacgCAGGCTGTATATGTTACAGAATTCTCCCTCGGTAGTCACTGTAGTTAGCTTATTTAATCTAATCACAAAATACCTCTAACACTGAAagattttatagaaataaattcatattatatgtatatggtGGGGATGTAAATTTTGTCACGATTGGATAAAGCACATTTAGTATGTTTTGAGAAATCTAggcatattacattacatttatacagTGTTTATATCATATGctctgtaatgtaaatgtaaataaacaactCTCATCTACACAAGACAACACTAAGTGGCTAccaaactgaattaatttaaaGACCAATAAATTGAACTGTTTTGTTTGA
>XM_034302735.1
ACCTGAAGAGACATGGCATTCTGGATTATTTTACCCATCAGTCTCAGTGCTGTTTCATTCATCGGATGCTGGACGGTGTATGGACTTGCATTAAGATTCCACCATGTCTGCTCACTCAGTAACTGTGATGTACCAGTATTACAAGGCTAACATTGCTTCAATGATTACGATGCCATTACTGAATCATCACTCAGGTCACACTGCTGGGATCTTCTATGTAGTTGTTGATACATGGAATACAGCAACTCATGTCTGACAAATGAAACTGGAAGTTGCTGCACGGGACATAACATACCCACCATAAGTGGAAGTGGAACCAACTTTCCAGAAAATTCCCTGTTTAGTGCTACAATCAATGGGGCTTCATTTTTATTTGTGGTTTTCAGTATTTTCCATCATGCACATATCGTGAAAAAGTGCAGTGTGCACTCTCTCCTCAGTAAATGTGCCATGGTCTTTGGTTGTATCGCTGGAGTTGGAGCCTTTGTGGCTGGAAACTGCAATCCAGCAGAGCTGATGTTTCTGCATAACCTAGGTGCTGCTTTGAGCTTCGTGTGTATCTGCTTCTACACGGTGTTGCTTACATTTCTGACAAGCAGGTGCATGCTAACTGGACTCGAGCGTGCCCTCTACCCAATACGCATCGTCTTCTCCAGCATTCAGGTCATACTGACCATCCTCTATTGCATCTTCTTTTCTCAAAAGGAGTTCTACTACAGGCACATTTCTGCCATTTTCGAGTGGACACTCAGCATGAACCTGGAGCTCTTCGAACTCAGCTATGCTGTAGagttttatttcttctcttctgCAATGCTTTCGGTACTTCTCTCAAACAGGGATGAAGAGAGCACTATCATTTTGTCCTGATGGCTGACATTTTGCCTTCTCTTCCTTTAGGTTATTAAGCAACAAATCTTTATTTCTTAGTAGCTTGTGTTCAAATTGGAAAGTCTAGAGAGATTGTTAGAGATGCAAACCTGTAAACTGGCCTGTGACTCAGGCATGTAAGCATATTTTTTGCACAAATGCAACCCTCAGCCTTGGTTGGAATTTCATACCTGCAgtattctgtaaatgttaaatatacgCAGGCTGTATATGTTACAGAATTCTCCCTCGGTAGTCACTGTAGTTAGCTTATTTAATCTAATCACAAAATACCTCTAACACTGAAagattttatagaaataaattcatattatatgtatatggtGGGGATGTAAATTTTGTCACGATTGGATAAAGCACATTTAGTATGTTTTGAGAAATCTAggcatattacattacatttatacagTGTTTATATCATATGctctgtaatgtaaatgtaaataaacaactCTCATCTACACAAGACAACACTAAGTGGCTAccaaactgaattaatttaaaGACCAATAAATTGAACTGTTTTGTTTGA

Function

NR:

description
PREDICTED: transmembrane protein 150A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937044.2 True 1832 mRNA 0.40 7 18898163 18903520
XM_034302735.1 False 1423 mRNA 0.39 8 18898163 18903003

Neighbor

gene id symbol gene type direction distance location
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding downstream 46056 18845152 ~ 18852107 (-)
alox5a alox5,alox5a,LOC107747471,LOC107582511,LOC107690200,LOC107678516,LOC107708393 coding downstream 60366 18831551 ~ 18837797 (-)
washc2c fam21c coding downstream 69841 18810075 ~ 18828322 (-)
zfand4 zfand4 coding downstream 90566 18788701 ~ 18807597 (-)
march8 march8,LOC107095557 coding downstream 111700 18716883 ~ 18786463 (-)
mat1a mat1a,LOC108263526,LOC107678534,LOC107582520,LOC107708460,LOC107733750,LOC105911600 coding upstream 108461 19011981 ~ 19018909 (-)
sfxn3 LOC108263463,LOC108441766,LOC107678536,LOC107708462,LOC107582521,LOC107570532,LOC107733760 coding upstream 133472 19036992 ~ 19044321 (-)
lzts2a lzts2 coding upstream 161513 19065033 ~ 19114569 (-)
sema4ga LOC108263187,LOC108441763 coding upstream 234975 19138495 ~ 19171153 (-)
slf2 LOC108263189 coding upstream 269720 19173240 ~ 19185983 (-)
G48947 NA non-coding downstream 7351 18890563 ~ 18890812 (-)
G48940 NA non-coding downstream 44450 18853513 ~ 18853713 (-)
G48938 NA non-coding downstream 53528 18843753 ~ 18844635 (-)
G48476 NA non-coding downstream 724981 18167020 ~ 18173182 (-)
LOC117596862 NA non-coding downstream 806550 18087504 ~ 18091613 (-)
G48954 NA non-coding upstream 24662 18928182 ~ 18929502 (-)
G48970 NA non-coding upstream 53637 18957157 ~ 18957459 (-)
G48975 NA non-coding upstream 66071 18969591 ~ 18969796 (-)
G49053 NA non-coding upstream 149007 19052527 ~ 19052751 (-)
G49108 NA non-coding upstream 286807 19190327 ~ 19190615 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other downstream 284642 18330368 ~ 18613521 (-)
col13a1 col13a1 other downstream 1236744 17578178 ~ 17661419 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other downstream 1323741 17561404 ~ 17574422 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other downstream 1422071 17471187 ~ 17476092 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other downstream 1915434 16979131 ~ 16982729 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other upstream 412967 19316487 ~ 19319733 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other upstream 711197 19614717 ~ 19667661 (-)
slc4a11 slc4a11,LOC107695019 other upstream 813080 19716600 ~ 19768134 (-)
metap1 metap1,LOC107556924 other upstream 1278533 20182053 ~ 20205593 (-)
atp10d atp10d,LOC107556926 other upstream 1321389 20224909 ~ 20256520 (-)

Expression


Co-expression Network